Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G29950 791 / 0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) AT2G19240 690 / 0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT5G57210 636 / 0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT4G13730 56 / 7e-08 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3) AT1G04830 53 / 7e-07 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) AT2G30710 50 / 6e-06 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT2G19230 0 / 1 Leucine-rich repeat transmembrane protein kinase protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G076000 [exp] 1354 / 0 AT4G29950 811 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Potri.006G069300 [exp] 63 / 6e-10 AT4G13730 385 / 1e-130 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3) Potri.018G131300 [exp] 61 / 2e-09 AT4G13730 414 / 4e-142 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3) Potri.017G057100 [exp] 59 / 6e-09 AT4G13730 602 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3) Potri.001G316700 [exp] 59 / 1e-08 AT4G13730 586 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3) Potri.007G134200 [exp] 49 / 1e-05 AT2G30710 692 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001628 [exp] 799 / 0 AT4G29950 739 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Lus10001435 [exp] 740 / 0 AT4G29950 661 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Lus10037829 [exp] 55 / 2e-07 AT1G04830 537 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Lus10027046 [exp] 54 / 5e-07 AT2G30710 526 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10017104 [exp] 52 / 2e-06 AT1G04830 580 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Lus10008148 [exp] 49 / 1e-05 AT2G30710 625 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10019370 [exp] 44 / 0.0003 AT2G30710 568 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00566 [poplar] [flax] RabGAP-TBC Rab-GTPase-TBC domain
Representative CDS sequence Show only first row Show all	>Potri.018G143100.1 pacid=42802028 polypeptide=Potri.018G143100.1.p locus=Potri.018G143100 ID=Potri.018G143100.1.v4.1 annot-version=v4.1 ATGGGGTCAGCTTCAATTGAGCAGGAAATGCCAGCAGGAGAGGGGATTCAGAGTCGTTTTGAGAATTTAAGAGGGGTTCAATGGAGGATAGATCTTGGAA TTTTGCCTTCTCCTTCATCTTCTAGTGTTGATGATGTTCGTAGAGTTACTGCTGAATCTAGAAGAAGGTATGCTGGTTTAAGAAGGCGGCTCTTAGTTGA TCCACATTTGTCAAAGGATGGAAGGAGTTCACCTGATCCTGTAATTGACAATCCACTGTCACAAAACCCAGATAGCACCTGGGGTCGCTTCTTTCGGAAT GCTGAACTGGAAAAAACACTTGACCAGGATTTGTCACGTTTATATCCAGAACATGGTAGCTATTTCCAGACACCTGGCTGCCAAGGAATGTTAAGACGAA TCTTGTTATTGTGGTGCCTTAGACATCCAGAGTATGGTTATCGACAAGGAATGCATGAACTCTTGGCGCCTTTTCTATATGTTCTTCACATTGATGCGGA GCATCTGTCTGAAGTGCGCAAGCAGTATGAAGACCATTTCACAGACAAATTTGATGGTTTAGCATTTCAGGAAAATGATCTTACATACAACTTTGATTTT AAAAAGTTTTTGGATTCCATGGAGGATGAAATTGGCTCCCATGGTAATGCTGTCAAAGTCAAGTCTCTCAATGAGCTTGATCCTGAGATACAGACAACTG TATTACTAACGGATGCTTACGGGGCTGAAGGTGAATTGGGTATTGTCATATCAGAGAAATTTATGGAACACGATGCTTACTGTATGTTTGATGCATTGAT GAGTGGGTCTCATGGTTCAGTTGCCGTTGTGGACTTCTACTCTCACTCCCCTGCACATGGTTCTCATTCTGGCTTACCCCCTGTCATTGAAGCTTCTGCT GCTTTGTACCATTTACTGTCTGTTGTTGATTCATCTTTACACAGCCACCTTGTTGAGCTGGGTGTTGAACCTCAGTATTTTGCACTTCGCTGGTTACGGG TTTTATTTGGACGAGAATTTTCACTCGAAAACCTCTTGTTAATATGGGATGAAATATTTGCAGCAGATAATAATGTCATATTAGAAAAAGGTGCTGAAGA TGATGCAGACTCTGGTTTTCGTATCTTTATATCACCTCGGGGAGCATTAATACCAGCTATGTCTGTTTCTATGATTCTTCATTTGAGGTCTTCCCTGCTT GCCACTGAGCACGCAACTACTTGTCTCCAGAGACTCTTGAATTTTCCTGAGAATATAGATCTGAGAAAACTGATAAACAAGGCAAAGTCTTTACAGTCCC TCGCACTGGATACTAATATGTCCTCTGTGTCTCCTCCATTTGATGGGATTTATAACCACAGTAAATCAATGGTGGTGAGAGGTCATACTCATGCACTTTC ATCTGGTTCTGTTTCCCCCAAAACTCCTCTAAATGCAGTGCCTGATAGTTATTGGGAGGAGAAATGGAGAGATTTGCACAAGACAGAAGAACTCAAGCAT GATCATTTAGGGAAATTGAAACCAAGCCAGAAAAAACGGTGGACAGAAAAAGTAAGATTGCCCCTATCTAGGACAGAATCTGCACCAGCTCCAGTAAAAG CAGGGAGTGGGAAGAAGGATCAGAAGTCATCTATTAAGCGTAGTTTGTTAGAAGATTTATCACATGAACTTGGGATGGATGGAGATATTGGAAAATCAGA TTGCCATGAAGTTTCAGGCAAGAAGGACCATCAAACTGCAGAAGTTGAGGGAGGGGGACCAGACAGTGTTAACAATGACTTCACTTGCTCAACTGAGGAG AGATGTCTTAGTGGAAATTCTGGGAGTGAGGAAAATTCATCTGTGTTTTCGGACCCATCTAGTTCTCTTAGTGGTGGTAATGAGCATGAAAATGACTCTG AGAAAAGTAGCGTTGCCTCGAATATGTCTGTCGATGAAAATGATGATCAACCTGAGGCTCTCCAGGAAGATCCAACCCTTCCTGTTTCCCATCCCCCTGA AGGTGTGTCTCTAAATTCTGGGACCAACAATGAGCCTGCTGGAAAACAGGTTGCAGGTCCTAAGGAGAGGAAACTTTCAGGTAAATTTCAATGGTTTTGG AAGTTTGGACGGAATACTGCTGGTGAGGAGACTTCTGAAAAGGGAAGCGGCACATTTGAGGCTACAAAACCTGTCAACGATGCCAGTAATCAGATTAATT CAATAGGATCTTCGTCTGTCAATGGATCTTGCAACTCTTATGCCAGTAGCAAAGGAGAGAGCGTGGATCAGAATGTGATGGGTACTTTGAGGAACTTTGG ACAGTCCATGCTTGAACATATTCAGATAATCGAGTCTGTTTTCCAGCAAGATAGGGGTCAGGTGGGTTCATTAGAGAATTTCTCCAAAACTGCTCTTGTT GGCAAAGGACAAGTCACAGCCATGACAGCTCTTAAAGAGCTTCGGAAAATCAGCAATCTCTTATCTGAGATGTGA
AA sequence Show only first row Show all	>Potri.018G143100.1 pacid=42802028 polypeptide=Potri.018G143100.1.p locus=Potri.018G143100 ID=Potri.018G143100.1.v4.1 annot-version=v4.1 MGSASIEQEMPAGEGIQSRFENLRGVQWRIDLGILPSPSSSSVDDVRRVTAESRRRYAGLRRRLLVDPHLSKDGRSSPDPVIDNPLSQNPDSTWGRFFRN AELEKTLDQDLSRLYPEHGSYFQTPGCQGMLRRILLLWCLRHPEYGYRQGMHELLAPFLYVLHIDAEHLSEVRKQYEDHFTDKFDGLAFQENDLTYNFDF KKFLDSMEDEIGSHGNAVKVKSLNELDPEIQTTVLLTDAYGAEGELGIVISEKFMEHDAYCMFDALMSGSHGSVAVVDFYSHSPAHGSHSGLPPVIEASA ALYHLLSVVDSSLHSHLVELGVEPQYFALRWLRVLFGREFSLENLLLIWDEIFAADNNVILEKGAEDDADSGFRIFISPRGALIPAMSVSMILHLRSSLL ATEHATTCLQRLLNFPENIDLRKLINKAKSLQSLALDTNMSSVSPPFDGIYNHSKSMVVRGHTHALSSGSVSPKTPLNAVPDSYWEEKWRDLHKTEELKH DHLGKLKPSQKKRWTEKVRLPLSRTESAPAPVKAGSGKKDQKSSIKRSLLEDLSHELGMDGDIGKSDCHEVSGKKDHQTAEVEGGGPDSVNNDFTCSTEE RCLSGNSGSEENSSVFSDPSSSLSGGNEHENDSEKSSVASNMSVDENDDQPEALQEDPTLPVSHPPEGVSLNSGTNNEPAGKQVAGPKERKLSGKFQWFW KFGRNTAGEETSEKGSGTFEATKPVNDASNQINSIGSSSVNGSCNSYASSKGESVDQNVMGTLRNFGQSMLEHIQIIESVFQQDRGQVGSLENFSKTALV GKGQVTAMTALKELRKISNLLSEM

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G29950			Ypt/Rab-GAP domain of gyp1p su...		Potri.018G143100 [exp]	0	1
AT5G24600			Protein of unknown function, D...		Potri.015G001300 [exp]	1.41	0.8298
AT5G24600			Protein of unknown function, D...		Potri.015G001500 [exp]	4.69	0.7882
AT2G37940		ERH1, AtIPCS2	enhancing RPW8-mediated HR-lik...		Potri.006G093800 [exp]	5.74	0.8150
AT3G50700	C2H2ZnF	ATIDD2	indeterminate(ID)-domain 2 (.1...		Potri.014G180600 [exp]	7.74	0.7905
AT5G04740		ACR12	ACT domain repeats 12, ACT dom...		Potri.008G020700 [exp]	13.26	0.7568
AT1G54130		AT-RSH3, RSH3, ...	RELA/SPOT homolog 3 (.1)		Potri.001G168200 [exp]	13.78	0.8219	Pt-RSH2.3
AT1G53190			RING/U-box superfamily protein...		Potri.011G097100 [exp]	14.07	0.7911
AT3G10960		ATAZG1	AZA-guanine resistant1 (.1)		Potri.013G083300 [exp]	15.29	0.7985
AT4G30210		AR2, ATR2	P450 reductase 2 (.1.2)		Potri.018G092100 [exp]	17.97	0.7635	PSC450.1
AT1G18210			Calcium-binding EF-hand family...		Potri.012G048200 [exp]	21.81	0.7791	Pt-CBL1.1

Compare expression of checked genes

Potri.018G143100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.