Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30020 1338 / 0 PA-domain containing subtilase family protein (.1) AT2G19170 1331 / 0 SLP3 subtilisin-like serine protease 3 (.1) AT4G20430 645 / 0 Subtilase family protein (.1.2) AT5G44530 638 / 0 Subtilase family protein (.1) AT1G30600 610 / 0 Subtilase family protein (.1) AT1G62340 575 / 0 ALE1 ABNORMAL LEAF-SHAPE 1, ABNORMAL LEAF-SHAPE, PA-domain containing subtilase family protein (.1) AT4G34980 319 / 7e-97 SLP2 subtilisin-like serine protease 2 (.1) AT5G67360 311 / 4e-94 ARA12 Subtilase family protein (.1) AT3G14240 309 / 3e-93 Subtilase family protein (.1) AT3G14067 300 / 1e-89 Subtilase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G076200 [exp] 1557 / 0 AT2G19170 1342 / 0.0 subtilisin-like serine protease 3 (.1) Potri.001G151100 [exp] 670 / 0 AT2G19170 615 / 0.0 subtilisin-like serine protease 3 (.1) Potri.001G440300 [exp] 657 / 0 AT4G20430 1107 / 0.0 Subtilase family protein (.1.2) Potri.011G155400 [exp] 640 / 0 AT4G20430 1143 / 0.0 Subtilase family protein (.1.2) Potri.011G010700 [exp] 372 / 5e-120 AT1G62340 631 / 0.0 ABNORMAL LEAF-SHAPE 1, ABNORMAL LEAF-SHAPE, PA-domain containing subtilase family protein (.1) Potri.006G141200 [exp] 318 / 9e-97 AT2G05920 1103 / 0.0 Subtilase family protein (.1) Potri.012G131500 [exp] 318 / 3e-96 AT5G51750 1102 / 0.0 subtilase 1.3 (.1) Potri.001G450600 [exp] 316 / 7e-96 AT1G32960 772 / 0.0 Subtilase family protein (.1) Potri.007G045100 [exp] 312 / 2e-94 AT5G67090 727 / 0.0 Subtilisin-like serine endopeptidase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006973 [exp] 1336 / 0 AT4G30020 1334 / 0.0 PA-domain containing subtilase family protein (.1) Lus10001310 [exp] 1238 / 0 AT4G30020 1258 / 0.0 PA-domain containing subtilase family protein (.1) Lus10023389 [exp] 634 / 0 AT4G20430 1173 / 0.0 Subtilase family protein (.1.2) Lus10038416 [exp] 632 / 0 AT5G44530 1169 / 0.0 Subtilase family protein (.1) Lus10000960 [exp] 622 / 0 AT4G30020 658 / 0.0 PA-domain containing subtilase family protein (.1) Lus10040146 [exp] 620 / 0 AT2G19170 655 / 0.0 subtilisin-like serine protease 3 (.1) Lus10001006 [exp] 609 / 0 AT2G19170 629 / 0.0 subtilisin-like serine protease 3 (.1) Lus10008060 [exp] 604 / 0 AT4G20430 1112 / 0.0 Subtilase family protein (.1.2) Lus10015559 [exp] 549 / 0 AT1G62340 903 / 0.0 ABNORMAL LEAF-SHAPE 1, ABNORMAL LEAF-SHAPE, PA-domain containing subtilase family protein (.1) Lus10011018 [exp] 407 / 2e-131 AT2G19170 445 / 3e-146 subtilisin-like serine protease 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00082 [poplar] [flax] Peptidase_S8 Subtilase family CL0364 [poplar] [flax] Leu-IlvD PF02225 [poplar] [flax] PA PA domain CL0570 [poplar] [flax] PPP-I PF05922 [poplar] [flax] Inhibitor_I9 Peptidase inhibitor I9 CL0159 [poplar] [flax] E-set PF06280 [poplar] [flax] fn3_5 Fn3-like domain
Representative CDS sequence Show only first row Show all	>Potri.018G143400.2 pacid=42802238 polypeptide=Potri.018G143400.2.p locus=Potri.018G143400 ID=Potri.018G143400.2.v4.1 annot-version=v4.1 ATGAGGGTGGTGGAGTTTTGGTGTACAATTCTTGTCTTATTTGCTTTGTTGATCAATGGGAAAGCAGAGGTTTATATTGTGACTATGGTGGGAGAGCCTG TCATAAGTTATACAGGAGGCATACCTGGTTTTGAAGCCACTGCCGTGGAATCTGACGAGACGCTTGACGCCACCAGTCAATTGGTCACGTCCTATGCCCA GCACCTTGAACAGAAACATGATATACTTCTTGATTCACTGTTTGACCGAGGGACCTACAAGAAACTCTACAGCTATAAACATCTTATAAATGGCTTTGCA GTTCATATTTCCCCAGATCAGGCAGAAACCCTGAGGCGTACCACTGATGTGAAATCTGTGGAGAGAGATTGGAAGGTGAGGAGACTTACAACGCACACCC CACAGTTTCTGGGGCTTCCAACTGGGGTTTGGCCAACAGGGGGTGGCTTTGATAGGGCTGGAGAAGACATTATAATAGGATTCGTAGACTCAGGAATTTT TCCACGCCATCCAAGCTTTGGATCTCACAATGCAGACCCATATGGGCCTCTTCCAAAATACAGAGGAAAATGTGAAGTTGATCCTGATACCAAGAGAGAA TTCTGTAACGGAAAGATCATTGGGGCCCAGCATTTTGCTGAAGCTGCAATTGCCGCTGGGGCATTCAATCCTTCCATTGATTTTGCTTCTCCCATGGATG GAGATGGGCATGGAAGTCACACAGCAGCTATTGCAGCTGGAAATAATGGTATTCCGGTGAGAATTCACGGCCATGAATTTGGGAAAGCAAGTGGGATGGC TCCCCGTGCTAGGATTGCTGTGTACAAGGCACTCTATAGGCTTTTTGGAGGCTTCATTGCAGATGTGGTAGCTGCTATTGATCAGGCTGTTCATGATGGA GTGGATATACTCAGCCTCTCAGTGGGTCCAAATAGTCCTCCAGCGACCACGACAACAACATTTTTGAACCCTTTTGATGCTACACTTCTTGGAGCTGTGA AAGCAGGTGTATTTGTTGTACAGGCAGCTGGAAATGGTGGTCCTTTTCCAAAAACTCTGGTTTCATATAGCCCTTGGATAACATCTGTGGCTGCTGCAAT TGATGACCGGAGATACAAGAACCATCTGTTCCTGGGAAATGGCAAAATTTTACCTGGAATCGGTTTGTCACCTTGTACACATCCAAATCAAACATATACC TTGGTTGCTGCAAATGATGTACTGCTTGATTCTTCAGTGATGAAGTACAGTCCTTCAGACTGCCAAAGACCAGAAGTGTTGAACAAGAACTTGGTGGAGG GGAACATTCTTCTTTGTGGTTATTCCTTTAATTTTGTCGTTGGTACCGCATCTATCAAGAAAGTCTCAGAAACAGCCAGGAGTCTTGGTGCAATTGGATT TGTTCTTGCTGTGGAAAATGTTTCTCCTGGAACGAAGTTTGATCCTGTCCCTGTTGGTATTCCTGGGATTCTAATCACAGATGTGACAAAATCGATGGAT CTTATAGACTATTACAACACCTCTACACCAAGAGATTGGACTGGACGAGTGAAGAGTTTCAATGGTACAGGAAGTATTGGGAATGGCTTGGAGCCTATTC TCCATAAATCAGCACCACAAGTAGCATTATTCTCTGCTCGAGGGCCCAACATAAAAGATTTCAGATTCCAAGATGCTGATCTTCTCAAACCAGATATCCT GGCTCCTGGATCTCTCATATGGGCTGCTTGGTCTCCTAATGGAACAGATGAGCCAAATTATGTTGGAGAAGGATTTGCCATGATGTCCGGAACTAGCATG GCAGCGCCACATATAGCAGGGATAGCTGCTCTTGTAAAGCAGAAGCACCCTCATTGGAGTCCTGCTGCCATCAAATCAGCCTTAATGACAACATCAACAA ATCTGGACAGAGCAGGAAGGCCCCTTCAAGCACAGCAATATTCTGAAACTGAAGCCATGAAGCTGGTCACGGCGACACCCTTTGATTATGGGAGTGGTCA TGTTAACCCAAGGGCTGCTCTGGACCCCGGACTCATATTAGATGCAGGTTATGAGGATTACTTGGGTTTCTTGTGCACAACTCCTGGCATCGATGTCCAT GAGATACGTAACTACACAAACACACCATGCAACTACAGTATGGGTCATCCATCGAATCTCAACACCCCATCAATCACTGTTTCCCATCTAGTGAAAACGC AAACAGTGACTCGCAGAGTCACAAATGTTGCGGAGGAAGAAACCTATGTGATCACAGCCAGAATGCAACCAGCCGTTGCCATCGAAGCTAATCCTCCAGC CATGACTCTGAGACCCGGTGCATCACGGAAGTTCACGGTGAGTCTCACTGTTCGATCGGTAACTGGAACATACAGTTTCGGAGAAATTTTGATGAAAGGC AGCAGGGGTCACAAAGTAAGGATCCCAGTAGTAGCAATGGGATATTGGCGATAG
AA sequence Show only first row Show all	>Potri.018G143400.2 pacid=42802238 polypeptide=Potri.018G143400.2.p locus=Potri.018G143400 ID=Potri.018G143400.2.v4.1 annot-version=v4.1 MRVVEFWCTILVLFALLINGKAEVYIVTMVGEPVISYTGGIPGFEATAVESDETLDATSQLVTSYAQHLEQKHDILLDSLFDRGTYKKLYSYKHLINGFA VHISPDQAETLRRTTDVKSVERDWKVRRLTTHTPQFLGLPTGVWPTGGGFDRAGEDIIIGFVDSGIFPRHPSFGSHNADPYGPLPKYRGKCEVDPDTKRE FCNGKIIGAQHFAEAAIAAGAFNPSIDFASPMDGDGHGSHTAAIAAGNNGIPVRIHGHEFGKASGMAPRARIAVYKALYRLFGGFIADVVAAIDQAVHDG VDILSLSVGPNSPPATTTTTFLNPFDATLLGAVKAGVFVVQAAGNGGPFPKTLVSYSPWITSVAAAIDDRRYKNHLFLGNGKILPGIGLSPCTHPNQTYT LVAANDVLLDSSVMKYSPSDCQRPEVLNKNLVEGNILLCGYSFNFVVGTASIKKVSETARSLGAIGFVLAVENVSPGTKFDPVPVGIPGILITDVTKSMD LIDYYNTSTPRDWTGRVKSFNGTGSIGNGLEPILHKSAPQVALFSARGPNIKDFRFQDADLLKPDILAPGSLIWAAWSPNGTDEPNYVGEGFAMMSGTSM AAPHIAGIAALVKQKHPHWSPAAIKSALMTTSTNLDRAGRPLQAQQYSETEAMKLVTATPFDYGSGHVNPRAALDPGLILDAGYEDYLGFLCTTPGIDVH EIRNYTNTPCNYSMGHPSNLNTPSITVSHLVKTQTVTRRVTNVAEEETYVITARMQPAVAIEANPPAMTLRPGASRKFTVSLTVRSVTGTYSFGEILMKG SRGHKVRIPVVAMGYWR

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G30020			PA-domain containing subtilase...		Potri.018G143400 [exp]	0	1
AT3G51950	C3HZnF		Zinc finger (CCCH-type) family...		Potri.009G050700 [exp]	1.00	0.8871
AT1G63850			BTB/POZ domain-containing prot...		Potri.001G100900 [exp]	3.87	0.8588
AT5G50150			Protein of Unknown Function (D...		Potri.015G080300 [exp]	4.47	0.8631
AT5G04310			Pectin lyase-like superfamily ...		Potri.010G229000 [exp]	5.00	0.8425
AT3G13510			Protein of Unknown Function (D...		Potri.001G233000 [exp]	5.09	0.8082
AT1G66150		TMK1	transmembrane kinase 1 (.1)		Potri.001G217700 [exp]	5.91	0.8374
AT4G18570			Tetratricopeptide repeat (TPR)...		Potri.004G054900 [exp]	7.34	0.8008
AT4G23820			Pectin lyase-like superfamily ...		Potri.003G139100 [exp]	7.74	0.8510
AT1G29300		UNE1	unfertilized embryo sac 1, Pla...		Potri.011G071000 [exp]	8.00	0.8023
AT1G78060			Glycosyl hydrolase family prot...		Potri.002G094000 [exp]	8.48	0.8307

Compare expression of checked genes

Potri.018G143400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.