Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25850 412 / 2e-143 ORP4B OSBP(oxysterol binding protein)-related protein 4B (.1), OSBP(oxysterol binding protein)-related protein 4B (.2) AT5G57240 411 / 3e-143 ORP4C OSBP(oxysterol binding protein)-related protein 4C (.1), OSBP(oxysterol binding protein)-related protein 4C (.2) AT4G25860 397 / 3e-137 ORP4A OSBP(oxysterol binding protein)-related protein 4A (.1) AT5G02100 81 / 1e-16 UNE18, ORP3A UNFERTILIZED EMBRYO SAC 18, OSBP\(OXYSTEROL BINDING PROTEIN\)-RELATED PROTEIN 3A, Oxysterol-binding family protein (.1) AT3G09300 81 / 1e-16 ORP3B OSBP(oxysterol binding protein)-related protein 3B (.1) AT5G59420 80 / 3e-16 ORP3C OSBP(oxysterol binding protein)-related protein 3C (.1) AT2G31030 66 / 1e-11 ORP1B OSBP(oxysterol binding protein)-related protein 1B (.1) AT1G13170 65 / 3e-11 ORP1D OSBP(oxysterol binding protein)-related protein 1D (.1), OSBP(oxysterol binding protein)-related protein 1D (.2) AT2G31020 65 / 4e-11 ORP1A OSBP(oxysterol binding protein)-related protein 1A (.1) AT4G08180 64 / 7e-11 ORP1C OSBP(oxysterol binding protein)-related protein 1C (.1), OSBP(oxysterol binding protein)-related protein 1C (.2), OSBP(oxysterol binding protein)-related protein 1C (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G076400 [exp] 689 / 0 AT5G57240 392 / 9e-136 OSBP(oxysterol binding protein)-related protein 4C (.1), OSBP(oxysterol binding protein)-related protein 4C (.2) Potri.006G086400 [exp] 81 / 2e-16 AT3G09300 764 / 0.0 OSBP(oxysterol binding protein)-related protein 3B (.1) Potri.019G015111 [exp] 68 / 5e-12 AT4G08180 889 / 0.0 OSBP(oxysterol binding protein)-related protein 1C (.1), OSBP(oxysterol binding protein)-related protein 1C (.2), OSBP(oxysterol binding protein)-related protein 1C (.3) Potri.002G088000 [exp] 67 / 8e-12 AT4G08180 1144 / 0.0 OSBP(oxysterol binding protein)-related protein 1C (.1), OSBP(oxysterol binding protein)-related protein 1C (.2), OSBP(oxysterol binding protein)-related protein 1C (.3) Potri.005G172900 [exp] 66 / 2e-11 AT4G08180 1158 / 0.0 OSBP(oxysterol binding protein)-related protein 1C (.1), OSBP(oxysterol binding protein)-related protein 1C (.2), OSBP(oxysterol binding protein)-related protein 1C (.3) Potri.001G121700 [exp] 66 / 2e-11 AT4G22540 1109 / 0.0 OSBP(oxysterol binding protein)-related protein 2A (.1), OSBP(oxysterol binding protein)-related protein 2A (.2), OSBP(oxysterol binding protein)-related protein 2A (.3), OSBP(oxysterol binding protein)-related protein 2A (.4) Potri.010G051400 [exp] 61 / 6e-10 AT1G13170 1211 / 0.0 OSBP(oxysterol binding protein)-related protein 1D (.1), OSBP(oxysterol binding protein)-related protein 1D (.2) Potri.003G111600 [exp] 59 / 3e-09 AT4G22540 1100 / 0.0 OSBP(oxysterol binding protein)-related protein 2A (.1), OSBP(oxysterol binding protein)-related protein 2A (.2), OSBP(oxysterol binding protein)-related protein 2A (.3), OSBP(oxysterol binding protein)-related protein 2A (.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021603 [exp] 461 / 2e-162 AT5G57240 368 / 4e-126 OSBP(oxysterol binding protein)-related protein 4C (.1), OSBP(oxysterol binding protein)-related protein 4C (.2) Lus10040586 [exp] 449 / 7e-158 AT5G57240 367 / 3e-125 OSBP(oxysterol binding protein)-related protein 4C (.1), OSBP(oxysterol binding protein)-related protein 4C (.2) Lus10024386 [exp] 78 / 2e-15 AT5G02100 771 / 0.0 UNFERTILIZED EMBRYO SAC 18, OSBP\(OXYSTEROL BINDING PROTEIN\)-RELATED PROTEIN 3A, Oxysterol-binding family protein (.1) Lus10010843 [exp] 76 / 9e-15 AT5G02100 771 / 0.0 UNFERTILIZED EMBRYO SAC 18, OSBP\(OXYSTEROL BINDING PROTEIN\)-RELATED PROTEIN 3A, Oxysterol-binding family protein (.1) Lus10025695 [exp] 71 / 8e-13 AT4G08180 887 / 0.0 OSBP(oxysterol binding protein)-related protein 1C (.1), OSBP(oxysterol binding protein)-related protein 1C (.2), OSBP(oxysterol binding protein)-related protein 1C (.3) Lus10035967 [exp] 70 / 9e-13 AT4G08180 803 / 0.0 OSBP(oxysterol binding protein)-related protein 1C (.1), OSBP(oxysterol binding protein)-related protein 1C (.2), OSBP(oxysterol binding protein)-related protein 1C (.3) Lus10024613 [exp] 66 / 2e-11 AT4G22540 1065 / 0.0 OSBP(oxysterol binding protein)-related protein 2A (.1), OSBP(oxysterol binding protein)-related protein 2A (.2), OSBP(oxysterol binding protein)-related protein 2A (.3), OSBP(oxysterol binding protein)-related protein 2A (.4) Lus10036949 [exp] 62 / 4e-10 AT1G13170 1241 / 0.0 OSBP(oxysterol binding protein)-related protein 1D (.1), OSBP(oxysterol binding protein)-related protein 1D (.2) Lus10006237 [exp] 62 / 5e-10 AT1G13170 1219 / 0.0 OSBP(oxysterol binding protein)-related protein 1D (.1), OSBP(oxysterol binding protein)-related protein 1D (.2) Lus10025635 [exp] 62 / 5e-10 AT4G08180 1142 / 0.0 OSBP(oxysterol binding protein)-related protein 1C (.1), OSBP(oxysterol binding protein)-related protein 1C (.2), OSBP(oxysterol binding protein)-related protein 1C (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01237 [poplar] [flax] Oxysterol_BP Oxysterol-binding protein
Representative CDS sequence Show only first row Show all	>Potri.018G143600.2 pacid=42801828 polypeptide=Potri.018G143600.2.p locus=Potri.018G143600 ID=Potri.018G143600.2.v4.1 annot-version=v4.1 ATGGTCTCTGAAGGCAATGATAATATCCAGGTTGTCCTTACTAAACCTTTATCAGTGGATGGAGATGTGGCGGCTGATTACAAGGCTCCTAATCTTGTCC AACGCATGTTAAGCCTGATTAGAAATATACGGCCAGGATCGGATCTCACCAACTTCCAGCTTCCACCTCTATTCAACATTCCAAAGTCCCAGCTCCAATG TTTTGGTGAATCAGCCTACTGCTTCAGCAAAAATCTGTTGCAGCAGTGCAACAATGCTGAGAACTCACTGGACAGATTCACCTCTGTTGTAGCATGGAGC ATATCTACTACACGTTCTCCCTCTTTTGGTGTTGCCCCTTACAACCCCATTCTTGGAGAGACTCACCATGTTTCCAGAGGAAGCCTCAATGTTCTACTTG AACAGGTGTCCCATCATCCACCAGTTTCAGCCCTCCACGCGACGGACGAGAAAGAAAATATTGAGCTGATTTGGTGCCAACAACCTGTTCCAAAATTCTA TGGCACAAGAGTAGAAGCTGAAGTGCTTGGAAAAAGGCAACTTAAACTCCTGAATCATGGAGAAACTTATATGATGAATTCACCAAAGCTCATGATCAGA TTTCTTCCACCTCGGGTTGATTGGATTGGCAAGGTAAAAATTTCTTGCCAGGAGACTGGTCTTGAAGCTGAGTTATGCTACATTACCAGTTCTTTACTAG GACGTAGAGGAGAGCATCGCGTTAAAGGAAAGATCTACCAGTCTTCATCTATGAAGACCCTTTATGAGGTTGAAGGATACTGGAGCAGTATTGTCAAAGC CAAGGACATTAATAGTGGCAAGGAGACAATTATATATGATGCAAAGGAAGTGTTCTCTGAGCTCAAGACTCCTATAGTCAAGGATCTGCAGGGAATTTGG CCAACTGAATCAACTGCAGTGTGGAGTGAGGTGAGCAAAGGCATACTGAGCAAAAACTGGACGAAGGCAAGAGAAGCAAAGAGCACAGTTGAGGATAACC AGAGAAAACTTGCTAAAGAGAGGGTATCAAAGGGAGAAACTTGGGTTCCTAATCATTTCACTGTATCTGATAGCAAAGAAGATGGTTGGGACTGCTCACC TATTCAAGAAAGAGTCCCACCAGCCCCCATTGTTGTCCCTCTTTAA
AA sequence Show only first row Show all	>Potri.018G143600.2 pacid=42801828 polypeptide=Potri.018G143600.2.p locus=Potri.018G143600 ID=Potri.018G143600.2.v4.1 annot-version=v4.1 MVSEGNDNIQVVLTKPLSVDGDVAADYKAPNLVQRMLSLIRNIRPGSDLTNFQLPPLFNIPKSQLQCFGESAYCFSKNLLQQCNNAENSLDRFTSVVAWS ISTTRSPSFGVAPYNPILGETHHVSRGSLNVLLEQVSHHPPVSALHATDEKENIELIWCQQPVPKFYGTRVEAEVLGKRQLKLLNHGETYMMNSPKLMIR FLPPRVDWIGKVKISCQETGLEAELCYITSSLLGRRGEHRVKGKIYQSSSMKTLYEVEGYWSSIVKAKDINSGKETIIYDAKEVFSELKTPIVKDLQGIW PTESTAVWSEVSKGILSKNWTKAREAKSTVEDNQRKLAKERVSKGETWVPNHFTVSDSKEDGWDCSPIQERVPPAPIVVPL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G25850		ORP4B	OSBP(oxysterol binding protein...		Potri.018G143600 [exp]	0	1
AT3G62150		ABCB21, PGP21	ATP-binding cassette B21, P-gl...		Potri.014G113000 [exp]	1.73	0.8466
AT5G63380			AMP-dependent synthetase and l...		Potri.012G095000 [exp]	8.83	0.8405
AT3G10870		ATMES17, MES17	ARABIDOPSIS THALIANA METHYL ES...		Potri.019G061700 [exp]	13.96	0.7953
AT2G42280	bHLH	bHLH130	basic helix-loop-helix (bHLH) ...		Potri.001G270000 [exp]	20.04	0.7509
					Potri.001G427210 [exp]	22.04	0.8272
AT5G14420		RGLG2	RING domain ligase2 (.1.2.3.4)		Potri.008G183600 [exp]	23.00	0.8044
AT1G61310			LRR and NB-ARC domains-contain...		Potri.001G426030 [exp]	24.49	0.8415
AT3G22890		APS1	ATP sulfurylase 1 (.1)		Potri.010G081200 [exp]	25.45	0.7494
AT5G02420			unknown protein		Potri.006G084700 [exp]	28.37	0.7714
AT4G23980	ARF	ARF9	auxin response factor 9 (.1.2)		Potri.001G088600 [exp]	30.39	0.8132

Compare expression of checked genes

Potri.018G143600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.