Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	CYP71.3
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57250 825 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G39710 219 / 1e-59 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G31850 223 / 2e-59 PGR3 proton gradient regulation 3 (.1) AT1G12300 215 / 4e-59 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62670 213 / 3e-58 RPF2 rna processing factor 2 (.1) AT5G65560 212 / 1e-56 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G12775 206 / 4e-56 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G19290 209 / 1e-55 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G06920 206 / 1e-54 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G63070 201 / 1e-54 pentatricopeptide (PPR) repeat-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G105400 [exp] 269 / 3e-75 AT5G61990 773 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.014G040200 [exp] 261 / 8e-73 AT1G19290 883 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G264800 [exp] 252 / 4e-69 AT4G31850 1428 / 0.0 proton gradient regulation 3 (.1) Potri.016G025600 [exp] 231 / 3e-64 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G105700 [exp] 228 / 5e-62 AT4G19440 758 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.001G236800 [exp] 227 / 1e-61 AT5G59900 1071 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.019G043101 [exp] 228 / 2e-61 AT5G14770 796 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G368700 [exp] 223 / 9e-60 AT5G55840 1272 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G014100 [exp] 219 / 4e-59 AT3G06920 1404 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036510 [exp] 1217 / 0 AT5G57250 718 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10008185 [exp] 266 / 2e-74 AT1G19290 864 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10003424 [exp] 251 / 7e-69 AT4G31850 1373 / 0.0 proton gradient regulation 3 (.1) Lus10026206 [exp] 246 / 5e-67 AT5G14770 717 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012139 [exp] 233 / 2e-63 AT5G59900 987 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027916 [exp] 224 / 3e-61 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010410 [exp] 226 / 5e-61 AT5G59900 998 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027914 [exp] 220 / 7e-60 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012068 [exp] 222 / 1e-59 AT5G39710 1028 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014245 [exp] 215 / 2e-59 AT1G12700 427 / 5e-141 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.018G143800.2 pacid=42800895 polypeptide=Potri.018G143800.2.p locus=Potri.018G143800 ID=Potri.018G143800.2.v4.1 annot-version=v4.1 ATGTCTTTCTCTCCTTCCTCCTCCTCCTCCTCTTCTTCTGTACAAACTCTACTCAAAAGTGGGTTCTCTCCAACTCTCAAATCCATCAACCAATTTCTCC ACTTTCTTTCAAAATCCCACAAATACGAATTGATCACTCACTTTTTCTGTCAAATTAATCGAAACAAGATCAAATGCAACCCCCAAACTCATTCAGTTTT CACCTGTGCTCTCCTCAAACTCGACAAATTTGAAGAAGCAGAGCATTTTATGAAGACCCAGATGGAGAGATCTTTAAAAGTTTCAGGATTTGGCGTTTGG GATTCTTTAATTCGAGGTTTTAGTGTCAATAAAAAGGACCCTGAGAAGGGTTTGTCGATACTAAAAGATTGCTTGAGGAATTATGGTATTTTGCCTTCTT CTTTTACTTTTTGTTCACTGATTCATAGTTTTAGTCATAAAAGAAATATGAGTGGAGCAATTGAGGTGTTAGAGTTAATGAAGGACGAGAAAGTTAGATA CCCTTTTAATAATTTTGTTTGTAGTTCAATCATTTATGGGTTTTGTAGGATAGGAAAGCCAGAACTTGCTATTGGGTTTTTTGAAAATGCTGTAAAGGTT GGAGCTTTAAGGCCCAATGTTGTGACATATACTACACTTGTGAGTGCACTTTGTATGTTAGGTAGAGTTAGTGAGGTCTGTGATTTGGTTTGTAGGATGG AGAAGAAAGGACTGGCATTTGATGTTGTCTTTTATAGCAATTGGATTTGTGGGTATTTTAGGGAAGGGATGTTAATGGAAGCGTTACGAAAGCATGGGGA AATGGTGGAAAAAGGAATAAATCTGGATATGGTAAGCTATACTGCACTCATTGATGGTTTTTCCAAGGGAGGGAATGTGGAGAAGGCGGTTGGTTTTCTA GACAAGATGATTCAAAATGGGTCAAGACCCAATTTGGTTACCTATACTTCAATTGTGATGGGGTTTTGCCAGAAAGGAAAAATGGATGAGGCGTTTGCAG CATTTAAGATGGTTGAAGATATGGGAATGGAAGTGGATGAGTTCGTTTATGCTGTTTTGATTGAAGGGTTTTGTAGGGAAGGAGACTTTGATCGTGTTTA TCAGTTGCTTCAGGACATGGAGCTTAAGAGGATTAGTCCAAGCATTGTTACTTATAATACTTTGATCAATGGGTTGTGCAAGAGTGGGAGGACATTGGAA GCAGATGAAGTCTCAAAAAGGATACAAGGAGATGTAGTTACATACAGTACATTGTTACATGGGTACACAGAGGAAGAGAACGGTGCAGGGATTTTGGAAA TTAAAAGGAGGTGGGAAGAAGCTGGAGTTTGCATGGATATTGTAATGTGTAACATACTTATCAAAGCACTTTTTATGGTTGGTGCATTTGAAGATGTGTA TGCACTGTACAAAGGAATGAAAGAAATGGATTTGGTTGCAGATTCAGTTACTTATTGTACATTGATCGATGGATATTGTAAATCCAGTAGAATTGATGAA GCACTTGAGATATTTGATGAGTTTAGGAAGACGTCAGCTTCTTCAGTTGCATGCTACAATTGTATGATTAATGGGCTGTGCAAGAATGGTATGGTGGATG TGGCCACAGAGGTATTCATTGAACTCAGTGAGAAAGGTTTGACTTTTGATGTGGGCATCTATATGACTTTAATCAAGGCAATAGCTAAAGCAGAAAGCAT GGAGGGAGTTTTGAATCTAATTTATAGAATTGAGAATCTGGGATTGGACATTTATGACACTCTATGCAATGACACAATCAGTTTTCTGTGCAAGCAGAAA TGTCCCCTGGCTGCAACTGAAGTGTGCATGGTGCTCAGGAAGAATCAGTTGATTGTTACATGTACGTCTTACTATTCAGTTTTGAAAGGGCTTATTGATG ATGGAAAAATATGGCTGAGTAAGCTCTTAATAGGAAGTTTTATGAAAGACTATGGCATTTCAGAACCTAAATTAAGTAAGATACTGCTGCATTACCTCAG TCTGAAAGACATTAACAGTGCACTTTGTTTTCTGAGTAAGATGAAGGAGAATGATTCATCTGTCACTTTTCCTGTTTGTGCTTTAAAAGTACTTATGAAA ACTGGTAGATTTTTGGCTGCCTATGAACTTGTCATGGGAGCTAAACATAATCTACCAGTTATGGATGTGGTTGATTACTCTATCATTGTTGATGGCCTTT GCAAAGGAGGGTATCCTGTCAAGGCTTTAGATCTCTGTGCTTTTGTTGAAAAGATGGGTGTAATTTTTAACATAATAACTTATAATTCAGTCATAAACGG ACTGTGCCGACAGGGTTGTCTTGTTGAAGCATTTCGGCTGTTCGATTCATTAGAGAAAATCAACTTGATTCCCTCAGAAATAACATATGCGACACTCATT GACAACTTATGTAAAGAAGGATATTTGGTGGATGCCAAGAAATTACTTGAGAGGATGCTCCTCAAGGGCTATAAAGGAAACACACGCATCTATAACTCAT TCATTCACGGTTACTGCAAGTTTGGACAACTAGAGAAAGCCTTGAAGATTCTGGATCATATGGAGATCAAATACCTTGTTCCTGATCAATTTACTGTCAG TTCTGTGATTTATGGTTTTTGTCAAAAGGGTGACATGGAAGGGGCTCTAGGATTTTATTTTGAACACAAGGGGAAAGGTATATCCCCTGATTTCTTGGGT TTTCTGCGTTTGATAAGAGGCCTTTGTGCAAAGGGGAGGATGGAAGAGGCCAGGAGCATTTTAAGAGAAATGCTTCAGTCACAATCTGTTAAGGAGCTTA TAAACAGAGTCAACACAGAGGTGGAAACAGAATCAATAGAAAGTATTCTTGTCTTTTTATGTGAGCAGGGAAGTATCAAGGAAGCAGTTACTGTACTTAA TGAAGTTAGCTCTGTGTTTTTTCCTGTTGAAAAGTGGTTTAGCCCTTTTCATGAATCTCAAGAACTGCTGCCACTTTCAGAGTTGAATGGTTTTAGTAGT GTTTCTTCCAGCACTGTATCTTCTTGTGAAAGAAATGATTTGGATTTGGCATCTGTGAATAAAGTAGATAACATGGTGGAGAACCCTGGTGATTTGAAGA GGTTTTCTCAATGTAATTTCTTTGACTCTTATTACTCTCTTATCGCACCACTCTGCTTGAAAGGGGAGCTACGGGAGGCTAATATATTAGCAAAGGAGAT GCTTGCTAGTTTGGATGGAGATTGTTAA
AA sequence Show only first row Show all	>Potri.018G143800.2 pacid=42800895 polypeptide=Potri.018G143800.2.p locus=Potri.018G143800 ID=Potri.018G143800.2.v4.1 annot-version=v4.1 MSFSPSSSSSSSSVQTLLKSGFSPTLKSINQFLHFLSKSHKYELITHFFCQINRNKIKCNPQTHSVFTCALLKLDKFEEAEHFMKTQMERSLKVSGFGVW DSLIRGFSVNKKDPEKGLSILKDCLRNYGILPSSFTFCSLIHSFSHKRNMSGAIEVLELMKDEKVRYPFNNFVCSSIIYGFCRIGKPELAIGFFENAVKV GALRPNVVTYTTLVSALCMLGRVSEVCDLVCRMEKKGLAFDVVFYSNWICGYFREGMLMEALRKHGEMVEKGINLDMVSYTALIDGFSKGGNVEKAVGFL DKMIQNGSRPNLVTYTSIVMGFCQKGKMDEAFAAFKMVEDMGMEVDEFVYAVLIEGFCREGDFDRVYQLLQDMELKRISPSIVTYNTLINGLCKSGRTLE ADEVSKRIQGDVVTYSTLLHGYTEEENGAGILEIKRRWEEAGVCMDIVMCNILIKALFMVGAFEDVYALYKGMKEMDLVADSVTYCTLIDGYCKSSRIDE ALEIFDEFRKTSASSVACYNCMINGLCKNGMVDVATEVFIELSEKGLTFDVGIYMTLIKAIAKAESMEGVLNLIYRIENLGLDIYDTLCNDTISFLCKQK CPLAATEVCMVLRKNQLIVTCTSYYSVLKGLIDDGKIWLSKLLIGSFMKDYGISEPKLSKILLHYLSLKDINSALCFLSKMKENDSSVTFPVCALKVLMK TGRFLAAYELVMGAKHNLPVMDVVDYSIIVDGLCKGGYPVKALDLCAFVEKMGVIFNIITYNSVINGLCRQGCLVEAFRLFDSLEKINLIPSEITYATLI DNLCKEGYLVDAKKLLERMLLKGYKGNTRIYNSFIHGYCKFGQLEKALKILDHMEIKYLVPDQFTVSSVIYGFCQKGDMEGALGFYFEHKGKGISPDFLG FLRLIRGLCAKGRMEEARSILREMLQSQSVKELINRVNTEVETESIESILVFLCEQGSIKEAVTVLNEVSSVFFPVEKWFSPFHESQELLPLSELNGFSS VSSSTVSSCERNDLDLASVNKVDNMVENPGDLKRFSQCNFFDSYYSLIAPLCLKGELREANILAKEMLASLDGDC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G57250			Pentatricopeptide repeat (PPR)...		Potri.018G143800 [exp]	0	1	CYP71.3
AT5G57160		ATLIG4	DNA ligase IV (.1)		Potri.018G141900 [exp]	1.73	0.8175	LIG4.1
AT5G44180	HD		Homeodomain-like transcription...		Potri.007G135500 [exp]	2.23	0.8295
AT1G70620			cyclin-related (.1.2.3)		Potri.008G186900 [exp]	4.47	0.8181
AT3G48670		RDM12, IDN2	RNA-DIRECTED DNA METHYLATION 1...		Potri.010G202700 [exp]	5.29	0.7440
AT3G57910			D111/G-patch domain-containing...		Potri.016G048600 [exp]	5.74	0.7808
AT5G42870		ATPAH2	phosphatidic acid phosphohydro...		Potri.014G031000 [exp]	6.32	0.7812
AT3G04910		ATWNK1, ZIK4, W...	with no lysine (K) kinase 1 (....		Potri.013G036300 [exp]	6.48	0.7565
					Potri.003G196200 [exp]	6.48	0.7750
AT5G07920		ATDGK1, DGK1	DIACYLGLYCEROL KINASE 1, diacy...		Potri.012G066300 [exp]	7.54	0.7596	ATDGK1.1
AT5G10370			helicase domain-containing pro...		Potri.005G071500 [exp]	10.48	0.7561

Compare expression of checked genes

Potri.018G143800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.