Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G19160 564 / 0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT4G30060 560 / 0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT4G31350 510 / 0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT5G57270 505 / 6e-180 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2.3) AT4G25870 504 / 1e-179 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G73810 237 / 3e-74 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT5G25970 235 / 7e-74 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G10280 228 / 1e-70 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT5G11730 226 / 2e-70 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT5G16170 225 / 9e-70 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G076600 [exp] 727 / 0 AT2G19160 560 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.001G195900 [exp] 236 / 3e-74 AT3G21310 504 / 8e-180 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.004G097700 [exp] 233 / 4e-73 AT5G16170 452 / 6e-159 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.010G121900 [exp] 233 / 6e-73 AT5G11730 409 / 1e-141 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.006G233400 [exp] 231 / 2e-72 AT5G11730 557 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.004G228100 [exp] 228 / 3e-71 AT1G10280 512 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.003G001700 [exp] 228 / 4e-71 AT1G10280 543 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.018G059100 [exp] 225 / 4e-70 AT5G11730 548 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.015G045500 [exp] 221 / 3e-68 AT5G16170 394 / 2e-135 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025464 [exp] 652 / 0 AT2G19160 550 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10006952 [exp] 573 / 0 AT2G19160 503 / 9e-179 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10026959 [exp] 508 / 0 AT4G31350 490 / 8e-174 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Lus10020159 [exp] 439 / 4e-152 AT4G31350 423 / 4e-146 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Lus10005504 [exp] 231 / 3e-72 AT5G11730 499 / 1e-177 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10005505 [exp] 231 / 3e-72 AT5G11730 499 / 1e-177 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10040972 [exp] 230 / 1e-71 AT1G10280 529 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10007457 [exp] 231 / 2e-70 AT5G11730 489 / 1e-170 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10013427 [exp] 227 / 2e-70 AT1G10280 528 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10009738 [exp] 226 / 3e-70 AT3G21310 511 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [poplar] [flax] GT-A PF02485 [poplar] [flax] Branch Core-2/I-Branching enzyme
Representative CDS sequence Show only first row Show all	>Potri.018G143900.5 pacid=42801161 polypeptide=Potri.018G143900.5.p locus=Potri.018G143900 ID=Potri.018G143900.5.v4.1 annot-version=v4.1 ATGAAGACATCTCAAGTGTGGCGTCTAGGCATGGGTGATATGCAGATTTTGCCTGTAGCTCGCCACCGCCCTCCTTCGAAGAGGCCAACATGGATTATTG TTTTGGTTTCAATGGTCAGCCTGTTTCTAGTTTGTGCTTATATCTATCCACCGCAAAGCAGGAATGCTTGTTATGTATTTTCTTCAAGAGGATGCCAGGT TCTAACAGATTGGCTTCCACCTGCTCCTACAAGGGAACTTACAGATGAAGAAATTGCTTCTCGTGTTGTGATTAGGGAAATTTTGAGTGCATCTCTTACT CCAACAAAGAACGCTAAAATTGCTTTTATGTTTTTGACTCCTGGCCCCTTACCTTTCGAGAAACTCTGGGACAAATTTTTCTCTGGTCACGAGGATAGAT TCTCTGTTTATGTGCATGCATCCAAGGAAAAACCAGTTCATGTGAGCCGTTACTTTGTTAATCAAGATATACGCAGTGACCAGGTGATATGGGGAAAAAT TTCGATGATTGATGCAGAGAGACGCCTATTGGCAAATGCTCTTAGAGACCCTGATAACCAACACTTTGTGTTACTTTCTGATAGTTGTGTGCCATTGTAC AAGTTTGACTACATCTACAACTATCTTATGTTTACAAATATAAGCTATGTTGATCGCTTTTACGATCCTGGCCCACATGGGAATGGCAGGTATTCAGAGC ACATGTTACCTGAAGTTGAGATGAAAGACTTTAGTAAGGGTGCACAGTGGTTCTCAATGAAGCGACAACATGCTGTGATGGTTTTGGCTGACAGCCTTTA CTATTCAAAATTCCGTGATTACTGCAAGCCTGGCTTGGAAGGGAAAAATTGCATTGCTGATGAACATTATTTGCCAACCTACTTCCATATGGTTGATCCA GGTGGAATAGCAAACTGGTCAGTAACACATGTTGACTGGTCTGAGAGAAAGTGGCATCCAAAATTGTATAGGTCTCAGGATGTTACTTATGACCTTCTGA GGAATATTACGTCAATCGATTTGAGTATTCATGTGACAAGTGATGAAAAGAAGGAAGTGCAGGTGCAGCCTTGCCTATGGAATGGTATCACACGACCATG TTACTTGTTTGCGAGGAAATTCCACAAAGAAACTATTGATGATTTGTTGCAGCTTTTCTCGAACTACACAGCACTTTGA
AA sequence Show only first row Show all	>Potri.018G143900.5 pacid=42801161 polypeptide=Potri.018G143900.5.p locus=Potri.018G143900 ID=Potri.018G143900.5.v4.1 annot-version=v4.1 MKTSQVWRLGMGDMQILPVARHRPPSKRPTWIIVLVSMVSLFLVCAYIYPPQSRNACYVFSSRGCQVLTDWLPPAPTRELTDEEIASRVVIREILSASLT PTKNAKIAFMFLTPGPLPFEKLWDKFFSGHEDRFSVYVHASKEKPVHVSRYFVNQDIRSDQVIWGKISMIDAERRLLANALRDPDNQHFVLLSDSCVPLY KFDYIYNYLMFTNISYVDRFYDPGPHGNGRYSEHMLPEVEMKDFSKGAQWFSMKRQHAVMVLADSLYYSKFRDYCKPGLEGKNCIADEHYLPTYFHMVDP GGIANWSVTHVDWSERKWHPKLYRSQDVTYDLLRNITSIDLSIHVTSDEKKEVQVQPCLWNGITRPCYLFARKFHKETIDDLLQLFSNYTAL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G19160			Core-2/I-branching beta-1,6-N-...		Potri.018G143900 [exp]	0	1
AT5G06120			ARM repeat superfamily protein...		Potri.001G036100 [exp]	3.00	0.7565
AT2G41310		ARR8, ATRR3	RESPONSE REGULATOR 8, response...		Potri.001G027000 [exp]	12.16	0.6824
AT2G43290		MSS3	multicopy suppressors of snf4 ...		Potri.007G128600 [exp]	21.90	0.6682
AT1G13980		VAN7, EMB30, GN	VASCULAR NETWORK 7, GNOM, EMBR...		Potri.017G078800 [exp]	46.47	0.6365	GN.2
AT3G06340			DNAJ heat shock N-terminal dom...		Potri.008G196201 [exp]	53.47	0.6066
AT1G71410			ARM repeat superfamily protein...		Potri.013G098700 [exp]	53.66	0.6390
AT3G11920			glutaredoxin-related (.1)		Potri.008G144800 [exp]	54.00	0.5783
AT1G12990			beta-1,4-N-acetylglucosaminylt...		Potri.010G046900 [exp]	56.86	0.5932
AT1G79830		GC5	golgin candidate 5 (.1.2.3.4)		Potri.001G185050 [exp]	71.97	0.6377
AT5G13500			unknown protein		Potri.001G275600 [exp]	74.83	0.5949

Compare expression of checked genes

Potri.018G143900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.