Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07390 301 / 2e-90 AtRLP1 receptor like protein 1 (.1.2.3) AT1G74170 291 / 5e-86 AtRLP13 receptor like protein 13 (.1) AT5G49290 276 / 3e-81 ATRLP56 receptor like protein 56 (.1) AT1G74190 274 / 3e-80 AtRLP15 receptor like protein 15 (.1) AT2G25470 273 / 8e-80 AtRLP21 receptor like protein 21 (.1) AT1G58190 269 / 5e-78 AtRLP9 receptor like protein 9 (.1.2) AT1G54470 268 / 6e-78 RPP27 resistance to Peronospora parasitica 27, RNI-like superfamily protein (.1.2) AT1G74180 263 / 3e-76 AtRLP14 receptor like protein 14 (.1) AT3G53240 253 / 8e-73 AtRLP45 receptor like protein 45 (.1) AT4G04220 225 / 2e-63 AtRLP46 receptor like protein 46 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G064600 [exp] 1134 / 0 AT1G74180 347 / 5e-105 receptor like protein 14 (.1) Potri.003G041400 [exp] 1073 / 0 AT1G74190 334 / 1e-99 receptor like protein 15 (.1) Potri.001G065327 [exp] 1063 / 0 AT1G07390 352 / 3e-105 receptor like protein 1 (.1.2.3) Potri.018G148000 [exp] 1059 / 0 AT1G74190 354 / 1e-106 receptor like protein 15 (.1) Potri.018G145512 [exp] 1055 / 0 AT2G25470 338 / 5e-101 receptor like protein 21 (.1) Potri.001G063300 [exp] 1055 / 0 AT1G07390 330 / 1e-96 receptor like protein 1 (.1.2.3) Potri.018G144700 [exp] 1042 / 0 AT1G07390 362 / 5e-109 receptor like protein 1 (.1.2.3) Potri.001G063909 [exp] 1037 / 0 AT1G74190 333 / 3e-99 receptor like protein 15 (.1) Potri.001G064900 [exp] 1035 / 0 AT1G07390 290 / 7e-83 receptor like protein 1 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030068 [exp] 458 / 3e-150 AT5G49290 397 / 3e-124 receptor like protein 56 (.1) Lus10042381 [exp] 385 / 4e-121 AT1G74190 289 / 1e-82 receptor like protein 15 (.1) Lus10027856 [exp] 360 / 2e-112 AT1G74190 272 / 1e-77 receptor like protein 15 (.1) Lus10003389 [exp] 244 / 5e-69 AT1G45616 432 / 7e-135 receptor like protein 6 (.1) Lus10016402 [exp] 233 / 5e-67 AT1G47890 313 / 4e-94 receptor like protein 7 (.1) Lus10019693 [exp] 231 / 8e-67 AT2G33050 295 / 1e-91 receptor like protein 26 (.1) Lus10016384 [exp] 233 / 4e-65 AT2G34930 464 / 5e-148 disease resistance family protein / LRR family protein (.1) Lus10042239 [exp] 224 / 5e-62 AT1G45616 395 / 1e-121 receptor like protein 6 (.1) Lus10006948 [exp] 219 / 3e-61 AT2G34930 637 / 0.0 disease resistance family protein / LRR family protein (.1) Lus10026415 [exp] 221 / 5e-61 AT1G47890 424 / 3e-131 receptor like protein 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.018G144600.4 pacid=42802065 polypeptide=Potri.018G144600.4.p locus=Potri.018G144600 ID=Potri.018G144600.4.v4.1 annot-version=v4.1 ATGACACTTTTTCTACACCATAATGATTTTAGAGGAAGAAAATTAGGTGACGAGTTGCAAAATTTAAACTCATTGAAAAGTTTGTATCTGGACCAGTGTT CTCTAGATGAACACTCCCTTCAAAACCTTGGAGCACTGCCTTTTCTAAAAAATCTGTCATTTTCTGCTCTCAGCAGCACTATACCTTCTGGAGGCTTCCT TCATCTCAGGAACTTGAAATTCTTAAATTTAAGTTACAATACTCTCAATAATAACAGCATCTTACAAACCATCGGTTTATGTGACTTAAATAATATCCAA GAGCTACATATGTATGACAATAATCTCAGTGGTTTCTTGCCTCCGTGTCTGGCGAATTTGACTTCCCTTCAACATCTAGATCTCTCTTCCAATCACTTGA AGATCCCTGTATCATTGAGCCCATTATACAACCTTTCAAAACTCAAGTATTTTGATGGATCGGGTAATGAAATATTCACAGAAGAAGATGATCATAATCT AAGCCCAAAGTTCCAGTTAGAGTCCCTCTATTTGAACAATCGTGGACAAGGTGCGAGAGCATTTCCCAAGTTCCTTTACCACCAAGTGAACCTACAATAT ATGGATCTTACAAACATCCATATAAAGGGAGAATTTCCAAATTGGTTGATTGAGAACAACACATACCTACAAGAACTTCATTTAGAAAATTGTTCTCTTT CGGGTCCATTCTTGTTGCCAAAGAATTCTCATGTGAATTTGTCATTCCTAAGTATATCCATGAATCACTTCCAAGGTCAAATCCCTTCAGAAATCGGAGC TCATTTGCCAAGGTTAGAAGTTTTATTGATGTCTGATGATGGTTTCAATGGAAGCATTCCTTTCTCGTTGGGTAACATTAGCTCGCTGCAAGCGTTCGAC CTGTCAAACAACAGTTTGCAAGGGCAAATCCCTGGATGGATAGGGAATATGTCTTCTCTTGAATTCTTGGACTTATCAGGGAACAATTTCTCTGGTCGTT TACCACTTAGATTCGACACTTCTTCAAATTTGAGATATCTTTATTTGTCTAGAAATAAGTTGCAAGGACCGATCGCAATGATATTTTATAACTCAGTTGA GATATTCGCGTTAGATCTTTCCCATAATAATTTAACTGGTACAATTCCAGAATGGATTGGCAGGCTATCTAACTTGAGATTTTTACTCTTGAGTTATAAT AATCTTGAAGGTGAAATCCCAATTCAATTATCCAAGTTGGACCAATTAACCTTGATTGATCTTTCTCACAATCACCTTTCTGGTAACATCCTCTCTTGGA TGATATCTACTCATCCTTTCCCACGACAATATTATTCCTATGATTATGTGTCCTCATCACGACAATCTTTGGAGTTTACAACGAAGAATGTATCCCTTTA TTATATAGGCAGCATTATCCGGTATTTCACAGGAATTGATTTCTCATGCAACAATTTCACAGGAGAGATTCCTCTTGACATTGGAAACCTCACCAAGATC AAGGCATTGAACCTTTTGCACAACAGTTTGACTGGACCAATTCCACCAACATTTTCAAACTTAAAGGAGATAGAGAGCCTGGATCTTTCCTACAACAAAC TGGATGGAGAAATCCCACCTCGACTTACTGAACTATTTTCTCTTGAAGTTTTTAGTGTGGCTCACAATAATTTGTCTGGTAAGACTCCTACGAAAGTTGC ACAATTTGCCACGTTTGATGAGAAGTGCTACAAGGACAACCCTTTTCTTTGTGGAGAACCGCTACTCAAAATATGTGGTGCGACTATGCCACCATCACCA TCACCAACTTTTACTAACAATGAAGATAATGGTGGCTTCATGGATATGGAGGTTTTCTATGTGACCTTTTGGGTTGAATATATCATGGTGCTGATAGTAA TAGGTGCAGTTCTATATATAAATCCATATTGGCGACGAGCTTGGTTTTATTTTATTGAGGTGAGCATCAACAATTGCTATTATTTTCTAGTGGACAATCT TCCCATTTTATACAAGTTTGGGTTTTCATAG
AA sequence Show only first row Show all	>Potri.018G144600.4 pacid=42802065 polypeptide=Potri.018G144600.4.p locus=Potri.018G144600 ID=Potri.018G144600.4.v4.1 annot-version=v4.1 MTLFLHHNDFRGRKLGDELQNLNSLKSLYLDQCSLDEHSLQNLGALPFLKNLSFSALSSTIPSGGFLHLRNLKFLNLSYNTLNNNSILQTIGLCDLNNIQ ELHMYDNNLSGFLPPCLANLTSLQHLDLSSNHLKIPVSLSPLYNLSKLKYFDGSGNEIFTEEDDHNLSPKFQLESLYLNNRGQGARAFPKFLYHQVNLQY MDLTNIHIKGEFPNWLIENNTYLQELHLENCSLSGPFLLPKNSHVNLSFLSISMNHFQGQIPSEIGAHLPRLEVLLMSDDGFNGSIPFSLGNISSLQAFD LSNNSLQGQIPGWIGNMSSLEFLDLSGNNFSGRLPLRFDTSSNLRYLYLSRNKLQGPIAMIFYNSVEIFALDLSHNNLTGTIPEWIGRLSNLRFLLLSYN NLEGEIPIQLSKLDQLTLIDLSHNHLSGNILSWMISTHPFPRQYYSYDYVSSSRQSLEFTTKNVSLYYIGSIIRYFTGIDFSCNNFTGEIPLDIGNLTKI KALNLLHNSLTGPIPPTFSNLKEIESLDLSYNKLDGEIPPRLTELFSLEVFSVAHNNLSGKTPTKVAQFATFDEKCYKDNPFLCGEPLLKICGATMPPSP SPTFTNNEDNGGFMDMEVFYVTFWVEYIMVLIVIGAVLYINPYWRRAWFYFIEVSINNCYYFLVDNLPILYKFGFS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G07390		AtRLP1	receptor like protein 1 (.1.2....		Potri.018G144600 [exp]	0	1
AT1G07390		AtRLP1	receptor like protein 1 (.1.2....		Potri.001G065327 [exp]	1.73	0.9800
AT1G07390		AtRLP1	receptor like protein 1 (.1.2....		Potri.018G117927 [exp]	2.44	0.9773
AT2G25470		AtRLP21	receptor like protein 21 (.1)		Potri.018G145512 [exp]	3.16	0.9786
AT1G45616		AtRLP6	receptor like protein 6 (.1)		Potri.016G126900 [exp]	6.00	0.9713
AT4G03230			S-locus lectin protein kinase ...		Potri.019G120000 [exp]	6.32	0.9643
AT1G74190		AtRLP15	receptor like protein 15 (.1)		Potri.018G148000 [exp]	8.36	0.9683
AT1G68040			S-adenosyl-L-methionine-depend...		Potri.019G016112 [exp]	8.94	0.9655
AT1G11330			S-locus lectin protein kinase ...		Potri.011G039400 [exp]	9.16	0.9603
AT1G58190		AtRLP9	receptor like protein 9 (.1.2)		Potri.001G063900 [exp]	9.94	0.9638
AT2G31880		SOBIR1, EVR	SUPPRESSOR OF BIR1 1, EVERSHED...		Potri.012G090500 [exp]	11.22	0.9694

Compare expression of checked genes

Potri.018G144600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.