Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07390 335 / 7e-100 AtRLP1 receptor like protein 1 (.1.2.3) AT1G74190 325 / 7e-96 AtRLP15 receptor like protein 15 (.1) AT2G25470 323 / 1e-95 AtRLP21 receptor like protein 21 (.1) AT1G58190 321 / 6e-94 AtRLP9 receptor like protein 9 (.1.2) AT3G53240 301 / 6e-88 AtRLP45 receptor like protein 45 (.1) AT1G74170 302 / 1e-87 AtRLP13 receptor like protein 13 (.1) AT5G49290 284 / 1e-81 ATRLP56 receptor like protein 56 (.1) AT1G74180 285 / 2e-81 AtRLP14 receptor like protein 14 (.1) AT1G54470 279 / 1e-79 RPP27 resistance to Peronospora parasitica 27, RNI-like superfamily protein (.1.2) AT4G04220 258 / 6e-73 AtRLP46 receptor like protein 46 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G065327 [exp] 1650 / 0 AT1G07390 352 / 3e-105 receptor like protein 1 (.1.2.3) Potri.018G145516 [exp] 1605 / 0 AT1G74190 346 / 1e-103 receptor like protein 15 (.1) Potri.018G144300 [exp] 1593 / 0 AT2G25470 348 / 8e-105 receptor like protein 21 (.1) Potri.018G148000 [exp] 1580 / 0 AT1G74190 354 / 1e-106 receptor like protein 15 (.1) Potri.018G145512 [exp] 1572 / 0 AT2G25470 338 / 5e-101 receptor like protein 21 (.1) Potri.001G063909 [exp] 1516 / 0 AT1G74190 333 / 3e-99 receptor like protein 15 (.1) Potri.001G063300 [exp] 1499 / 0 AT1G07390 330 / 1e-96 receptor like protein 1 (.1.2.3) Potri.001G064900 [exp] 1483 / 0 AT1G07390 290 / 7e-83 receptor like protein 1 (.1.2.3) Potri.003G041400 [exp] 1480 / 0 AT1G74190 334 / 1e-99 receptor like protein 15 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042381 [exp] 479 / 6e-153 AT1G74190 289 / 1e-82 receptor like protein 15 (.1) Lus10030068 [exp] 468 / 5e-150 AT5G49290 397 / 3e-124 receptor like protein 56 (.1) Lus10027856 [exp] 446 / 7e-141 AT1G74190 272 / 1e-77 receptor like protein 15 (.1) Lus10039529 [exp] 294 / 1e-84 AT2G34930 427 / 1e-134 disease resistance family protein / LRR family protein (.1) Lus10039531 [exp] 294 / 2e-84 AT2G34930 485 / 2e-156 disease resistance family protein / LRR family protein (.1) Lus10016384 [exp] 279 / 7e-79 AT2G34930 464 / 5e-148 disease resistance family protein / LRR family protein (.1) Lus10016341 [exp] 267 / 4e-75 AT2G34930 482 / 3e-155 disease resistance family protein / LRR family protein (.1) Lus10016339 [exp] 266 / 1e-74 AT2G34930 495 / 2e-160 disease resistance family protein / LRR family protein (.1) Lus10003389 [exp] 265 / 3e-74 AT1G45616 432 / 7e-135 receptor like protein 6 (.1) Lus10002755 [exp] 265 / 4e-74 AT2G34930 467 / 2e-149 disease resistance family protein / LRR family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.018G144700.2 pacid=42801189 polypeptide=Potri.018G144720.1.p locus=Potri.018G144700 ID=Potri.018G144700.2.v4.1 annot-version=v4.1 ATGAGGGGATGTGTCCGTTGCCATCATGCAGTGTTTTTTGCACGGCATGGGTCCGTGAAGTCCTCTATAAAAGCCTTAACCTCCTCGTTGTCCACTATAA CAATTGATATTAAGATGGGGCTGTTCCTTCAGGTGTTGACGGTGTTAGTGATAACGGTTTCGCTGCAAGGATGGCTGCCTCGTGGTTGCTTGGAGGAAGA GAGGATCGCTCTGTTGCACCTCAAAGATTCTCTTAACTATCCCAACGGCACCTCCCTTCCCTCCTGGAGAATAGCCCACGCCAACTGCTGTGATTGGGAA AGTGTTAACTGCCACAGCAGTACAGGTCGAGTCACCTTACTCGATCTTGACAGCGTAAGGAATGAGGAGCTGGGAGATTGGTACTTAAATGCCTCCTTCT TTCTTCCTTTCCAACAACTCAACGTTCTCTACTTGTGGAATAATCGGATAGCTGGTTGGGTTGAGAAGAAAGGTGGTTCTGAGTTACAGAAATTGAGCAA TTTGGAGATCCTTGACTTGGAATCTAATAGCTTCAATAACAGTATTCTATCATTTGTGGAGGGGCTTCCGTCTCTCAAATCACTGTATTTAGATTATAAT AGACTGGAGGGGTCAATAGATTTGAAAGAATCTTTGACCAGCTTGGAGACCTTGAGTCTGGGCGGCAACAATATTAGCAACTTGGTAGCCTCAAGAGGTC CAAGCAACTTGAGGGCTCTATCCCTATATAATATCACAACCTATGGAAGTAGCTTCCAGTTACTGCAATCATTAGGAGCATTCCCAAACCTCACGACACT TTATTTGAACTATAATGATTTTAGAGGAAGAATATTAGGTGACGGGTTGCAAAATTTGAGCTCCTTGAAAGAGTTGTATCTGGATGGTTGTTCTCTAGAT GAACACGCTCTTCAAAGCCTTGGAGCATTGCATTCTCTAAAAAATCTGTCATTGCAAGAACTTAATGGCACTGTACTTTCTGGAGGCTTCCTTGATCTCA AGAACTTGGAATACTTGGATTTGAGTTCCAATACTCTCAATAATAGCATCTTCCAAACCATCGAAACGGTGACCTCTCTTAAAACTTTAAGGTTGCGGAG CTGCAAACTAGATGGCCGAATACATACAGCCCAAGGCTTCCTTAATCTCAAGAACTTGGAATTCTTGGATTTGAGCTCCAATACTCTTAACAATAACATC TTTCAAACCATGGGCCTATGCGACTTACATCATCTCCAAGTGCTATATATCAACAACAATAATCTTAGTGGTATCTTGCCTCCGTGTCTGGCAAATTTGA CTTCTCTTCAACAACTATATCTCTCTTACAATCACTTCATGATCCCTATGTCATTGAGCCCATTATACAACCTTTCAAAACTCAAGGTTTTTTATGGTAC AAGTAATGAAATATTCGCAGGAGAAGATGATTATAATCTAAGCCCAAAGTTCCAGTTAGAGTCCCTCTATTTGAGCGGTATTGGACAAGGTGGTGCATTT CCCAAATTCCTTTACCACCAGTTCAGCCTGCAATCTTTGGATCTTACAAACATCCAAATAAAGGGAGAGTTTCCAAATTGGTTGATTGAGAACAACACAT ACCTACAAGAACTTTATTTAGAAAACTGTTCTCTTTCGGGTCCATTCTTGTTGCCAAAGAATTCTCATGTGAATTTGTCATTCCTAAGTATATCCATGAA TCACTTCCAAGGCCAAATCCCTTCAGAAATCGGAGCTCGTTTGCCAGGGTTAGAAGTTTTATTTATGTCTGACAATAGTTTCAATGGAAGCATTCCTTTC TCTTTGGGTAACATTAGCTCGCTGCAAGTGTTAGACCTGTCCAACAACAGTTTGCAAGGGCAAATTCCTGGATGGATAGGGAATATGCCTTCTCTTGAAT TCTTGGACTTATCAGGGAACAATTTTTCTGGTCGTTTACCACCTAGATTCGGCACTTCTTCAAATTTGAGATATGTTTATTTGTCTAGAAATAAGTTGCA AGGGCCGATCGCAATGACATTTTATAACTCCTCTGAGATATTCGCATTAGATCTTTCCCATAATAATTTAACTGGTAGAATTCCAAAATGGATTGACAGG CTATCTAACTTGAGATTTCTACTCTTGAGTTATAACAATCTTGAAGGTGAAATCCCAATTCAATTATCCAGGTTGGACCAATTAATTCTGATTGATCTTT CTCATAACCACCTTTCTGGTAACATCCTCTCTTGGATGATATCTACTCATAATTTCCCAGTAGAAAGCACTTACTTTGATTTTCTAGCCATATCACATCA ATCCTTCGAGTTTACAACGAAGAATGTATCCCTTTCTTATAGAGGCGACATTATCTGGTACTTTAAAGGAATTGATTTCTCATGCAATAATTTCACAGGA GAGATTCCTCCTGAAATTGGAAACCTCAGTATGATCAAGGTATTGAACCTTTCGCACAACAGTTTGACCGGACCAATTCCACCAACATTTTGGAACTTAA AGGAAATAGAGAGCTTGGATCTTTCCTACAACAAACTAGATGGAGAAATCCCACCTCGACTTACTGAACTATTTTCTCTAGAAGTTTTTAGTGTGGCTCA CAATAATTTGTCCGGTAAGACTCCTGCGAGAGTTGCACAGTTTGCCACGTTTGAGGAAAGCTGCTACAAGGACAACCTTTTTCTTTATGGAGAACCGCTA CCCAAAATATGTGATGCGGCTATGCCACCATCACCAATGTCAACTTCAACGAACAATGAAGATAATGGTGGCTTCATGGATATGGAGGTTTTCTATGTGA CCTTTTGGGTTGCATACATCATGATGTTATTGGTAATAGGTGCAGTTCTATACATAAATCCATATTGGCGACGAGCTTGGTTTCACTTTATTGAGGTAAG CATCAACAATTGCTATTATTTTCTAATGAACAATCTTCCCATTTTATCCAAGTTTGGGTTTTCATAG
AA sequence Show only first row Show all	>Potri.018G144700.2 pacid=42801189 polypeptide=Potri.018G144720.1.p locus=Potri.018G144700 ID=Potri.018G144700.2.v4.1 annot-version=v4.1 MRGCVRCHHAVFFARHGSVKSSIKALTSSLSTITIDIKMGLFLQVLTVLVITVSLQGWLPRGCLEEERIALLHLKDSLNYPNGTSLPSWRIAHANCCDWE SVNCHSSTGRVTLLDLDSVRNEELGDWYLNASFFLPFQQLNVLYLWNNRIAGWVEKKGGSELQKLSNLEILDLESNSFNNSILSFVEGLPSLKSLYLDYN RLEGSIDLKESLTSLETLSLGGNNISNLVASRGPSNLRALSLYNITTYGSSFQLLQSLGAFPNLTTLYLNYNDFRGRILGDGLQNLSSLKELYLDGCSLD EHALQSLGALHSLKNLSLQELNGTVLSGGFLDLKNLEYLDLSSNTLNNSIFQTIETVTSLKTLRLRSCKLDGRIHTAQGFLNLKNLEFLDLSSNTLNNNI FQTMGLCDLHHLQVLYINNNNLSGILPPCLANLTSLQQLYLSYNHFMIPMSLSPLYNLSKLKVFYGTSNEIFAGEDDYNLSPKFQLESLYLSGIGQGGAF PKFLYHQFSLQSLDLTNIQIKGEFPNWLIENNTYLQELYLENCSLSGPFLLPKNSHVNLSFLSISMNHFQGQIPSEIGARLPGLEVLFMSDNSFNGSIPF SLGNISSLQVLDLSNNSLQGQIPGWIGNMPSLEFLDLSGNNFSGRLPPRFGTSSNLRYVYLSRNKLQGPIAMTFYNSSEIFALDLSHNNLTGRIPKWIDR LSNLRFLLLSYNNLEGEIPIQLSRLDQLILIDLSHNHLSGNILSWMISTHNFPVESTYFDFLAISHQSFEFTTKNVSLSYRGDIIWYFKGIDFSCNNFTG EIPPEIGNLSMIKVLNLSHNSLTGPIPPTFWNLKEIESLDLSYNKLDGEIPPRLTELFSLEVFSVAHNNLSGKTPARVAQFATFEESCYKDNLFLYGEPL PKICDAAMPPSPMSTSTNNEDNGGFMDMEVFYVTFWVAYIMMLLVIGAVLYINPYWRRAWFHFIEVSINNCYYFLMNNLPILSKFGFS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G07390		AtRLP1	receptor like protein 1 (.1.2....		Potri.018G144700 [exp]	0	1
AT5G38210			Protein kinase family protein ...		Potri.004G097100 [exp]	2.00	0.9662
AT1G25390			Protein kinase superfamily pro...		Potri.010G121400 [exp]	6.92	0.9382
AT4G21700			Protein of unknown function (D...		Potri.003G087400 [exp]	8.66	0.9080
AT5G38260			Protein kinase superfamily pro...		Potri.004G097000 [exp]	9.21	0.9479
AT1G07390		AtRLP1	receptor like protein 1 (.1.2....		Potri.001G065327 [exp]	10.58	0.9394
AT1G18980			RmlC-like cupins superfamily p...		Potri.015G068200 [exp]	11.83	0.9206
AT1G25390			Protein kinase superfamily pro...		Potri.010G121100 [exp]	12.48	0.9430
AT1G71400		AtRLP12	receptor like protein 12 (.1)		Potri.012G012535 [exp]	13.67	0.9289
AT3G05660		AtRLP33	receptor like protein 33 (.1)		Potri.012G014625 [exp]	16.49	0.9191
AT1G07390		AtRLP1	receptor like protein 1 (.1.2....		Potri.018G144600 [exp]	20.73	0.9335

Compare expression of checked genes

Potri.018G144700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.