Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G19080 322 / 3e-110 metaxin-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G077100 [exp] 475 / 1e-170 AT2G19080 332 / 7e-114 metaxin-related (.1) Potri.018G147625 [exp] 331 / 2e-114 AT2G19080 196 / 2e-61 metaxin-related (.1) Potri.001G065336 [exp] 226 / 1e-75 AT2G19080 149 / 3e-45 metaxin-related (.1) Potri.018G145080 [exp] 171 / 4e-53 AT2G19080 102 / 2e-26 metaxin-related (.1) Potri.001G064609 [exp] 163 / 7e-51 AT2G19080 101 / 4e-27 metaxin-related (.1) Potri.001G065000 [exp] 99 / 2e-25 AT2G19080 48 / 2e-07 metaxin-related (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015535 [exp] 340 / 3e-117 AT2G19080 308 / 2e-104 metaxin-related (.1) Lus10020010 [exp] 338 / 6e-112 AT2G19080 308 / 1e-99 metaxin-related (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.018G145508.1 pacid=42800826 polypeptide=Potri.018G145508.1.p locus=Potri.018G145508 ID=Potri.018G145508.1.v4.1 annot-version=v4.1 ATGCAAGAATCTCAAGAAAGAGCAGAGTATACTCTTGTTGCAAGGAAACCCAGTTTTGGTCTCCCAACTGGTTGTCCAATCTGCTTGCCTCTTTTCATCT ACCTCAAATTTTCTAACTTTCCATTCCATTTGGTTTTCAACAACACTTTCCCTGATTCAGATCAAATTCCATATAGTGAATCAGGCACTTATGTGGCCTA CAATGACGAGAATGGTGGGGTAATCAAAAGTTTAAAGGAAGATGGTATTGTTGATTTGGACACTGACTTCAGCTCGCTCCCAGAATGGATATCAATGAAA GCGATGGTTAGCACCTGGCTTGCAGATGCAATCATGTATGAACTCTGGGTGGGGTCTGATGGAACCTCTGCCCGAACAATTTATCACTCTGGCCTCCCTT GGTTGATAGGAAAGGCTCTATTAATGAAACAAGTGCACGTTGTTAAGCAGCGACTTGGGATAACTAAAGAAAATGCTGAACGAAGGGAAGCAGAGATCTA CAAGAGAGCGAAAATTGCATATGGAGCTTTGTCAACCACATTAGGGGATCACACATTTCTTTTTGAAAGGCCATCTAGTTTGGACGCATATTTCCTTGGG CATGTCCTTTTCACTCTTCAAGCATTTCCTGAATCATCGATGCTGCAAAGTGCACTCTTGGAGCATGGTAATCTCATACGATATGCTGAAAAACTTAAGA CAGATTTCATGGAGGCTGGATCGTCTTCTTCTGTCCCGCAATTCCTTTCAGATGCTTCATCAACTTCAACAAGACGTCCTTCAAATTCAGGCTCAAAACC TAAGAAGCAACCCAAGAGGGAAAGGACAGAAGAGGAGAAAACTTTCAGAAGAAGGGCAAGATACTTCTAG
AA sequence Show only first row Show all	>Potri.018G145508.1 pacid=42800826 polypeptide=Potri.018G145508.1.p locus=Potri.018G145508 ID=Potri.018G145508.1.v4.1 annot-version=v4.1 MQESQERAEYTLVARKPSFGLPTGCPICLPLFIYLKFSNFPFHLVFNNTFPDSDQIPYSESGTYVAYNDENGGVIKSLKEDGIVDLDTDFSSLPEWISMK AMVSTWLADAIMYELWVGSDGTSARTIYHSGLPWLIGKALLMKQVHVVKQRLGITKENAERREAEIYKRAKIAYGALSTTLGDHTFLFERPSSLDAYFLG HVLFTLQAFPESSMLQSALLEHGNLIRYAEKLKTDFMEAGSSSSVPQFLSDASSTSTRRPSNSGSKPKKQPKRERTEEEKTFRRRARYF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G19080			metaxin-related (.1)		Potri.018G145508 [exp]	0	1
AT2G02040		NTR1, ATPTR2-B	NITRATE TRANSPORTER 1, ARABIDO...		Potri.011G120000 [exp]	9.48	0.7490	NTR1.4
AT5G43820			Pentatricopeptide repeat (PPR)...		Potri.005G247200 [exp]	48.23	0.7518
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Potri.005G009450 [exp]	53.06	0.6814
AT3G55080			SET domain-containing protein ...		Potri.008G047400 [exp]	61.02	0.7057
AT5G27550			P-loop containing nucleoside t...		Potri.005G031850 [exp]	69.19	0.7164
AT5G17680			disease resistance protein (TI...		Potri.013G098550 [exp]	69.38	0.6962
AT3G25930			Adenine nucleotide alpha hydro...		Potri.010G123300 [exp]	71.45	0.6868
AT2G27450		CPA, ATNLP1, NL...	nitrilase-like protein 1 (.1.2...		Potri.009G162600 [exp]	75.52	0.6941
AT5G38460			ALG6, ALG8 glycosyltransferase...		Potri.017G114100 [exp]	78.46	0.7008
AT5G05800			unknown protein		Potri.005G153700 [exp]	81.74	0.7135

Compare expression of checked genes

Potri.018G145508 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.