Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34400 462 / 5e-158 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT4G14820 328 / 7e-105 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G04780 304 / 2e-96 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G22410 303 / 6e-96 SLO1 SLOW GROWTH 1 (.1) AT1G08070 303 / 5e-95 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G02980 297 / 3e-94 OTP85 ORGANELLE TRANSCRIPT PROCESSING 85, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G15930 299 / 5e-94 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G29760 299 / 1e-93 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G13600 298 / 2e-93 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G21065 295 / 2e-93 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G145514 [exp] 859 / 0 AT2G34400 472 / 4e-162 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.012G108000 [exp] 813 / 0 AT2G34400 640 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.013G103600 [exp] 344 / 5e-112 AT1G08070 477 / 7e-160 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G031600 [exp] 342 / 7e-110 AT3G15930 784 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G128900 [exp] 337 / 9e-109 AT3G08820 812 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G105700 [exp] 335 / 6e-108 AT3G08820 810 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G019500 [exp] 330 / 3e-106 AT2G22410 791 / 0.0 SLOW GROWTH 1 (.1) Potri.003G041501 [exp] 315 / 2e-105 AT2G34400 251 / 1e-79 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.012G135600 [exp] 322 / 5e-104 AT4G38010 672 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010320 [exp] 594 / 0 AT2G34400 658 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10002288 [exp] 315 / 6e-101 AT1G31430 689 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10004052 [exp] 314 / 2e-100 AT1G31430 684 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10029436 [exp] 315 / 6e-100 AT3G08820 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10017446 [exp] 316 / 2e-99 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10009269 [exp] 308 / 1e-97 AT2G13600 874 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10015898 [exp] 305 / 1e-95 AT2G13600 899 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10033026 [exp] 303 / 3e-95 AT1G08070 921 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013319 [exp] 297 / 3e-94 AT4G21065 744 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10018223 [exp] 300 / 9e-94 AT2G29760 931 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.018G145510.1 pacid=42801535 polypeptide=Potri.018G145510.1.p locus=Potri.018G145510 ID=Potri.018G145510.1.v4.1 annot-version=v4.1 ATGGCATTCTCCCATTACTTAACATATTCTGCATATCCCTCTGCAGAACCAATAGCAAATTCAGTAAGAGAGCTGTTTGCAACTGACATTCCTGCACAAA GGAATGTTTGGGGTTTGGTTAATGGAAAGATTGGTCATTGTCTGGTGTTTAAGGCTGGTTTGGATGGTGATGAGCATGTAAATCATTCTTTGACTACAAT GGACGCAAGGTGTGGTGAAATGGGGTTTGCACGGAAGGTGTTTGATGAAATGGGTGACAGAGACTTGGTGTCGTGGAATTCGATGATTTCAGGGTATTCT AAGATGGGTTTTGCTAAAGAGGCAATTGGGTTGTTTATGGAAATGAGGGAAGAGGGGTTTGAGCCAGATGAGATGACGTTGGTGAATGTTCTTGGGGCGT GTGGGGATTTGGGTTTGGGGAGATGGATGGAGGTAAATTCGTATGTGGGGTCTGCCTTGATTGACATGTATGGTAAGTGTGGGGATTTGATATCTGCGAG GATGGTCTTTGATTCAATGCCAAACAAGGATGTTGTCACTTGGAATGCCATTATCACATGTGGAATTAATGGAGCTTCCAATGAAGCAATTGTACTATTC AATGGAATGAGAGAGACAGGTCCTAATCCAGATAAAGTCACAATGATTGAAGTATTGTCTGCATGTTCCACAATAGGGGCCCTTGATTTGGGGAAATGGG TTGAGACACATGCATCAGAAAGAGGTTTACAGCACGATGTTTATGTTGCGAGTGAATTAATTGATATGTATGCAAAATGTGGGAGCTTGGATGATGCACT CAGGGTTTTTGAGAGTATGCCTCATGAAAATGAGGTCTCATGGAATGCCATGATTTCTGCTCTTGCTTTTCATGGGCAGGCCTTGGAAGCATTATCATTA TTCAGACGCATGTCAAAGGATAATGGCACTGTTCACCCTAATGACATCACTTTCATAGGAGTACTTTCTGCATGTGTGCATGCCGGATTGGTTGATGAGG GCCGTCAATTGTTTGAATCAATGAAATTGTCATTTGAATTGGTCCCAAAAGTCAAGCATTATTCTTGCATGGTTGATCTTTGTGCGCGTGCAGGACGTCT GAGCGAAGCTTGGGACTTGATCAAGAAGATGCCTGGAAAACGAGATGAAATTGTGTTAGGGTCATTGCTTGGTGCCTGTCAGAGGCGTAGAAATGCAGAT GTTGGTGAAAGGATATATGCAAATATGAGAAGGTGGGATGATTCTGCAAAGATGCGGCAATGTGGTGTCTCTAAAACCCCTGGCTGTAGGTGGATTGATG TTGGAGCTCGTGCTCATGAATTTCATGCTGGTGACAGCTTACATCATCATTCGGAGAACATATACCAATTGCTGAATGAGGAGATGAAGAGAGAAGGTCA CATTCCAAATATCGGTTGCATATAG
AA sequence Show only first row Show all	>Potri.018G145510.1 pacid=42801535 polypeptide=Potri.018G145510.1.p locus=Potri.018G145510 ID=Potri.018G145510.1.v4.1 annot-version=v4.1 MAFSHYLTYSAYPSAEPIANSVRELFATDIPAQRNVWGLVNGKIGHCLVFKAGLDGDEHVNHSLTTMDARCGEMGFARKVFDEMGDRDLVSWNSMISGYS KMGFAKEAIGLFMEMREEGFEPDEMTLVNVLGACGDLGLGRWMEVNSYVGSALIDMYGKCGDLISARMVFDSMPNKDVVTWNAIITCGINGASNEAIVLF NGMRETGPNPDKVTMIEVLSACSTIGALDLGKWVETHASERGLQHDVYVASELIDMYAKCGSLDDALRVFESMPHENEVSWNAMISALAFHGQALEALSL FRRMSKDNGTVHPNDITFIGVLSACVHAGLVDEGRQLFESMKLSFELVPKVKHYSCMVDLCARAGRLSEAWDLIKKMPGKRDEIVLGSLLGACQRRRNAD VGERIYANMRRWDDSAKMRQCGVSKTPGCRWIDVGARAHEFHAGDSLHHHSENIYQLLNEEMKREGHIPNIGCI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G34400			Pentatricopeptide repeat (PPR-...		Potri.018G145510 [exp]	0	1
AT1G20050		HYD1	HYDRA1, C-8,7 sterol isomerase...		Potri.001G070301 [exp]	4.58	0.8043
AT2G20495			unknown protein		Potri.005G225900 [exp]	6.63	0.7555
AT3G04460		PEX12, ATPEX12,...	ABERRANT PEROXISOME MORPHOLOGY...		Potri.013G047800 [exp]	9.00	0.7647
AT1G19350	BZR	BZR2, BES1	BRASSINAZOLE-RESISTANT 2, BRI1...		Potri.016G125700 [exp]	10.48	0.7839
AT5G15880			unknown protein		Potri.004G105400 [exp]	11.48	0.7948
AT4G26340			F-box/RNI-like/FBD-like domain...		Potri.011G024200 [exp]	16.79	0.7792
AT1G12400			Nucleotide excision repair, TF...		Potri.009G138800 [exp]	19.49	0.7345
					Potri.010G031250 [exp]	21.72	0.7664
AT3G60460	MYB	DUO1	DUO POLLEN 1, myb-like HTH tra...		Potri.002G140900 [exp]	38.78	0.7298
AT5G45660			unknown protein		Potri.011G076600 [exp]	64.53	0.7270

Compare expression of checked genes

Potri.018G145510 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.