Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34400 472 / 4e-162 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT4G14820 330 / 1e-105 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G15930 311 / 1e-98 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G02980 305 / 4e-97 OTP85 ORGANELLE TRANSCRIPT PROCESSING 85, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G29760 308 / 5e-97 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G50270 304 / 6e-97 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G04780 303 / 2e-96 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G22410 303 / 2e-95 SLO1 SLOW GROWTH 1 (.1) AT3G08820 302 / 2e-95 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G08070 302 / 1e-94 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G145510 [exp] 859 / 0 AT2G34400 462 / 3e-158 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.012G108000 [exp] 836 / 0 AT2G34400 640 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.003G041501 [exp] 332 / 2e-112 AT2G34400 251 / 1e-79 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.013G103600 [exp] 343 / 1e-111 AT1G08070 477 / 7e-160 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G128900 [exp] 344 / 2e-111 AT3G08820 812 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G031600 [exp] 343 / 3e-110 AT3G15930 784 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G105700 [exp] 338 / 3e-109 AT3G08820 810 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G191000 [exp] 337 / 3e-107 AT1G11290 1178 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G086200 [exp] 331 / 4e-106 AT4G14820 840 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010320 [exp] 602 / 0 AT2G34400 658 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10029436 [exp] 321 / 2e-102 AT3G08820 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10004052 [exp] 318 / 7e-102 AT1G31430 684 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10017446 [exp] 322 / 2e-101 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10002288 [exp] 314 / 2e-100 AT1G31430 689 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10009269 [exp] 306 / 3e-97 AT2G13600 874 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10040680 [exp] 306 / 2e-96 AT2G29760 926 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015898 [exp] 306 / 6e-96 AT2G13600 899 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10033026 [exp] 305 / 6e-96 AT1G08070 921 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018223 [exp] 304 / 2e-95 AT2G29760 931 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.018G145514.1 pacid=42800759 polypeptide=Potri.018G145514.1.p locus=Potri.018G145514 ID=Potri.018G145514.1.v4.1 annot-version=v4.1 ATGGCAAAGCTTGTGGAAGAAGCTCGAAACAGCAAGTCTAAAACTCGAAGATTCATAGACAAATTCGCTCAGTACTATACTCCAGGGAATGTTTGGGGTT TGGTTCATGGAAAGATTGGTCATTGTCTGGTGTTTAAGGCTGGTTTGGATGGTGATGAGCATGTGAATCATTCTTTGACTACAATGGACGCAAGTTGTGG TGAAATGGGGTTTGCACGGAAGGTGTTTGATGAAATGGGTGACAGAGACTTGGTGTCGTGGAATTCGATGATTTCTGGGTATTCTAAGATGGGTTTTGCT AAAGAGGCAATTGGGTTGTTTATGGAAATGAGGGAGGAGGGGTTTGAGCCAGATGAGATGACGTTGGTGAATGTTCTTGGGGCGTGTGGGGATTTGGGTT TGGGGAGATGGGTGGAGGGGCTTGTTTTGGAGAAGAAGATGGAGGTAAATTCGTATGTGGGGTCTGCCTTGATTGTCATGTATGGTAAGTGTGGGGATTT GATATTTGTGAGGAGGGTCTTTGATTCAATGCCAAACAAGGATGTTGTCACTTGGAATGCCATTATCACATGTAGAATTAATGGAGCTTCCAATGAAGCA ATTGTACTATTCAACGGAATGAGAGAGGCAGGTCCTAATCCAGATAAAGTCACAATGATTGAAGTATTGTCTGCATGTTCCACAATAGGGGCCCTTGATT TGGGGAAATGGGTTGAGACACATGCATCAGAAAGAGGTTTCCAGCACGATGTCTACGTTGCGAGTGAATTAATTGATATGCATGCAAAATGTGGGAGCTT GGATAATGCACTCAGGGTTTTTGAGAGTATGCCTCATAAAAATGAGGTCTCATGGAATGCCATGATTTCTGCTCTTGCTTTCCATGGGCAGGCCCTGGAA GCATTATCATTATTCAGACGCATGTCAAAGGATAATGGCACTGTTCAGCCTAATGACATCACTTTCATAGGAGTACTTTCTGCATGTGTGCATGCCGGAT TGGTTGATGAAGGCCGCCAATTGTTTGAATCAATGAAATTGTCATTTGGATTGGTCCCAAAAGTCAAGCATTATTCTTGCATGGTTGATCTTTGTGCGCG AGCAGGACTTCTGAACGAAGCTTGGGACTTAATCAAGAAGATGCCTGGAAAACAATATGAAATTGTGTTGGGGTCATTGCTTGGTGCCTGTCAGAGGCGT AGAAATGCAGATGTTGGTGAAAAGATATATGCAAATATGAGAAGGTGGGATGATTCTGCAAAGATGAGGCAGTGTGGTGTCTCTAAAACCCCTGGCTGTA GCTGGATTGACGTTGGAGCTCGTGCTCATGAATTTCATGCTGGTGGCAGCTTACATCATCATTCGGAGAACATATACCAATTGCTGAATGAGGAGATGAA GAGAGAAGGTTACATTCCAAATATCGGTTGCATATAG
AA sequence Show only first row Show all	>Potri.018G145514.1 pacid=42800759 polypeptide=Potri.018G145514.1.p locus=Potri.018G145514 ID=Potri.018G145514.1.v4.1 annot-version=v4.1 MAKLVEEARNSKSKTRRFIDKFAQYYTPGNVWGLVHGKIGHCLVFKAGLDGDEHVNHSLTTMDASCGEMGFARKVFDEMGDRDLVSWNSMISGYSKMGFA KEAIGLFMEMREEGFEPDEMTLVNVLGACGDLGLGRWVEGLVLEKKMEVNSYVGSALIVMYGKCGDLIFVRRVFDSMPNKDVVTWNAIITCRINGASNEA IVLFNGMREAGPNPDKVTMIEVLSACSTIGALDLGKWVETHASERGFQHDVYVASELIDMHAKCGSLDNALRVFESMPHKNEVSWNAMISALAFHGQALE ALSLFRRMSKDNGTVQPNDITFIGVLSACVHAGLVDEGRQLFESMKLSFGLVPKVKHYSCMVDLCARAGLLNEAWDLIKKMPGKQYEIVLGSLLGACQRR RNADVGEKIYANMRRWDDSAKMRQCGVSKTPGCSWIDVGARAHEFHAGGSLHHHSENIYQLLNEEMKREGYIPNIGCI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G34400			Pentatricopeptide repeat (PPR-...		Potri.018G145514 [exp]	0	1
AT1G08130		ATLIG1	DNA ligase 1 (.1)		Potri.009G005900 [exp]	14.42	0.7558
AT1G69400			Transducin/WD40 repeat-like su...		Potri.010G162700 [exp]	20.78	0.7482
AT2G35035		URED	urease accessory protein D (.1...		Potri.001G159600 [exp]	53.88	0.7522
AT1G77620			P-loop containing nucleoside t...		Potri.005G177000 [exp]	78.84	0.7400
AT3G61540			alpha/beta-Hydrolases superfam...		Potri.002G164700 [exp]	86.60	0.7494
AT2G27170		SMC3, TTN7	TITAN7, STRUCTURAL MAINTENANCE...		Potri.009G154550 [exp]	100.95	0.7340
AT2G37370			unknown protein		Potri.016G080900 [exp]	134.52	0.6896
AT2G34780		EMB1611, MEE22	EMBRYO DEFECTIVE 1611, materna...		Potri.007G004001 [exp]	140.58	0.7266
AT5G51230	C2H2ZnF	AtEMF2, CYR1, V...	CYTOKININ RESISTANT 1, EMBRYON...		Potri.001G080200 [exp]	164.46	0.7209	VEF901,Pt-VRN2.5
AT5G18610			Protein kinase superfamily pro...		Potri.008G046500 [exp]	226.89	0.6923	Pt-PNPK2.2

Compare expression of checked genes

Potri.018G145514 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.