Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G54470 67 / 2e-13 RPP27 resistance to Peronospora parasitica 27, RNI-like superfamily protein (.1.2) AT1G74180 64 / 1e-12 AtRLP14 receptor like protein 14 (.1) AT5G49290 64 / 2e-12 ATRLP56 receptor like protein 56 (.1) AT1G58190 62 / 1e-11 AtRLP9 receptor like protein 9 (.1.2) AT2G25470 56 / 8e-10 AtRLP21 receptor like protein 21 (.1) AT1G74190 54 / 4e-09 AtRLP15 receptor like protein 15 (.1) AT3G53240 52 / 3e-08 AtRLP45 receptor like protein 45 (.1) AT3G11080 45 / 9e-06 AtRLP35 receptor like protein 35 (.1) AT5G53890 44 / 2e-05 AtPSKR2 phytosylfokine-alpha receptor 2 (.1) AT5G23400 44 / 2e-05 Leucine-rich repeat (LRR) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G063500 [exp] 256 / 4e-89 AT1G58190 71 / 8e-15 receptor like protein 9 (.1.2) Potri.001G065318 [exp] 200 / 3e-65 AT1G74190 81 / 1e-16 receptor like protein 15 (.1) Potri.001G063909 [exp] 203 / 2e-61 AT1G74190 333 / 3e-99 receptor like protein 15 (.1) Potri.003G041600 [exp] 197 / 4e-59 AT1G74170 333 / 2e-98 receptor like protein 13 (.1) Potri.018G145512 [exp] 196 / 6e-59 AT2G25470 338 / 5e-101 receptor like protein 21 (.1) Potri.001G065327 [exp] 194 / 3e-58 AT1G07390 352 / 3e-105 receptor like protein 1 (.1.2.3) Potri.001G064900 [exp] 194 / 5e-58 AT1G07390 290 / 7e-83 receptor like protein 1 (.1.2.3) Potri.018G148000 [exp] 194 / 5e-58 AT1G74190 354 / 1e-106 receptor like protein 15 (.1) Potri.018G144300 [exp] 193 / 8e-58 AT2G25470 348 / 8e-105 receptor like protein 21 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030068 [exp] 72 / 2e-15 AT5G49290 397 / 3e-124 receptor like protein 56 (.1) Lus10027856 [exp] 71 / 1e-14 AT1G74190 272 / 1e-77 receptor like protein 15 (.1) Lus10042381 [exp] 60 / 4e-11 AT1G74190 289 / 1e-82 receptor like protein 15 (.1) Lus10016338 [exp] 52 / 2e-08 AT2G34930 387 / 3e-121 disease resistance family protein / LRR family protein (.1) Lus10016339 [exp] 51 / 6e-08 AT2G34930 495 / 2e-160 disease resistance family protein / LRR family protein (.1) Lus10016337 [exp] 50 / 1e-07 AT2G34930 471 / 6e-151 disease resistance family protein / LRR family protein (.1) Lus10002757 [exp] 47 / 3e-07 AT2G34930 103 / 1e-26 disease resistance family protein / LRR family protein (.1) Lus10001035 [exp] 49 / 4e-07 AT2G34930 488 / 9e-157 disease resistance family protein / LRR family protein (.1) Lus10016340 [exp] 48 / 9e-07 AT2G34930 492 / 8e-159 disease resistance family protein / LRR family protein (.1) Lus10002753 [exp] 48 / 9e-07 AT2G34930 389 / 2e-120 disease resistance family protein / LRR family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.018G145520.1 pacid=42801684 polypeptide=Potri.018G145520.1.p locus=Potri.018G145520 ID=Potri.018G145520.1.v4.1 annot-version=v4.1 ATGGGGCTGTTCCTTCAGATGTTGATGGTTTTAGTGATGATGGCTTCCTTGCAAGGATGGCTGCCTCTTTGTTGCTTGGGGGAAGAGAGAATCGCTCTCT TGCAGCTCAAAGATGCTCTTCACTATCCCAATGGCACATCCCTACCCTCCTGGATAAAAGGCCACGCTCACTGTTGTGATTGGGAAAGTATTATCTGCAG CAGCAGTACAGGTCGAGTCACCGCACTCGTTCTTGACAGCACAAGGAATCAGGAACTGGGAGATTGGTACTTAAATGCCTCATTGTTTCTTCCTTTCCAA GAACTCGACGCTCTTTACTTGTCAGATAATCTTATAGCTGGTTGGGTTAAGAACAAAGATAGTTATGAACTACTGAGATTGAGCAATTTGGAGCACCTTG ACTTGAGATATAATTGCTTCGATAACAGTTGTCGCACGTATGCGGCATCACGGTGA
AA sequence Show only first row Show all	>Potri.018G145520.1 pacid=42801684 polypeptide=Potri.018G145520.1.p locus=Potri.018G145520 ID=Potri.018G145520.1.v4.1 annot-version=v4.1 MGLFLQMLMVLVMMASLQGWLPLCCLGEERIALLQLKDALHYPNGTSLPSWIKGHAHCCDWESIICSSSTGRVTALVLDSTRNQELGDWYLNASLFLPFQ ELDALYLSDNLIAGWVKNKDSYELLRLSNLEHLDLRYNCFDNSCRTYAASR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G54470		RPP27	resistance to Peronospora para...		Potri.018G145520 [exp]	0	1
AT2G01260			Protein of unknown function (D...		Potri.019G119100 [exp]	6.32	0.7492
AT3G56630		CYP94D2	"cytochrome P450, family 94, s...		Potri.001G277301 [exp]	6.48	0.7111
AT1G22380		ATUGT85A3	UDP-glucosyl transferase 85A3 ...		Potri.001G312650 [exp]	27.85	0.7013
					Potri.016G022050 [exp]	29.17	0.6101
AT1G32700			PLATZ transcription factor fam...		Potri.005G130300 [exp]	59.49	0.6426
					Potri.018G060100 [exp]	60.96	0.6425
AT5G64260		EXL2, MSJ1.10	EXORDIUM like 2 (.1)		Potri.014G126000 [exp]	92.17	0.6287
AT5G34930			arogenate dehydrogenase (.1)		Potri.008G074500 [exp]	100.14	0.6136

Compare expression of checked genes

Potri.018G145520 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.