Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G25470 338 / 6e-102 AtRLP21 receptor like protein 21 (.1) AT5G49290 335 / 4e-101 ATRLP56 receptor like protein 56 (.1) AT1G58190 335 / 9e-100 AtRLP9 receptor like protein 9 (.1.2) AT1G74180 333 / 2e-99 AtRLP14 receptor like protein 14 (.1) AT3G53240 330 / 3e-99 AtRLP45 receptor like protein 45 (.1) AT1G74190 327 / 3e-97 AtRLP15 receptor like protein 15 (.1) AT1G74170 317 / 2e-93 AtRLP13 receptor like protein 13 (.1) AT1G07390 298 / 2e-86 AtRLP1 receptor like protein 1 (.1.2.3) AT1G54470 261 / 1e-73 RPP27 resistance to Peronospora parasitica 27, RNI-like superfamily protein (.1.2) AT2G34930 228 / 1e-62 disease resistance family protein / LRR family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G063700 [exp] 1639 / 0 AT2G25470 357 / 9e-109 receptor like protein 21 (.1) Potri.003G041400 [exp] 1073 / 0 AT1G74190 334 / 1e-99 receptor like protein 15 (.1) Potri.001G065300 [exp] 1071 / 0 AT1G58190 390 / 4e-120 receptor like protein 9 (.1.2) Potri.018G148000 [exp] 1066 / 0 AT1G74190 354 / 1e-106 receptor like protein 15 (.1) Potri.018G145512 [exp] 1060 / 0 AT2G25470 338 / 5e-101 receptor like protein 21 (.1) Potri.018G124400 [exp] 1057 / 0 AT1G07390 342 / 1e-101 receptor like protein 1 (.1.2.3) Potri.003G041600 [exp] 1052 / 0 AT1G74170 333 / 2e-98 receptor like protein 13 (.1) Potri.001G065327 [exp] 1041 / 0 AT1G07390 352 / 3e-105 receptor like protein 1 (.1.2.3) Potri.001G063909 [exp] 1040 / 0 AT1G74190 333 / 3e-99 receptor like protein 15 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030068 [exp] 460 / 4e-148 AT5G49290 397 / 3e-124 receptor like protein 56 (.1) Lus10042381 [exp] 391 / 7e-121 AT1G74190 289 / 1e-82 receptor like protein 15 (.1) Lus10027856 [exp] 345 / 4e-104 AT1G74190 272 / 1e-77 receptor like protein 15 (.1) Lus10006948 [exp] 252 / 2e-71 AT2G34930 637 / 0.0 disease resistance family protein / LRR family protein (.1) Lus10039529 [exp] 241 / 1e-66 AT2G34930 427 / 1e-134 disease resistance family protein / LRR family protein (.1) Lus10016384 [exp] 240 / 5e-66 AT2G34930 464 / 5e-148 disease resistance family protein / LRR family protein (.1) Lus10016340 [exp] 235 / 2e-64 AT2G34930 492 / 8e-159 disease resistance family protein / LRR family protein (.1) Lus10027688 [exp] 234 / 4e-64 AT4G20140 707 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10024737 [exp] 228 / 3e-62 AT2G34930 920 / 0.0 disease resistance family protein / LRR family protein (.1) Lus10039531 [exp] 228 / 4e-62 AT2G34930 485 / 2e-156 disease resistance family protein / LRR family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.018G145522.1 pacid=42801028 polypeptide=Potri.018G145522.1.p locus=Potri.018G145522 ID=Potri.018G145522.1.v4.1 annot-version=v4.1 ATGGGGCTGTTCCTTCATATGTCGATGGTTTTAGCAATTATGATGGTTTCCTTGGAAGGATGGCTGCCTCTTGGTTGCTTGGAGGAAGAGAGAATCGCTC TGTTGCACCTCAAAGATGCTTTTAACTATCCCAATGGCACCTCCCTTCCCTCCTGGATAAAAGATGATGCCCACTGTTGTGACTGGGAACATATTGAGTG CAGCAGCAGTACTGGTCGAGTCATCGAACTCGTTCTTGACAGCACAAGGAATGAGGAAGTGGGAGATTGGTACTTTAATGCCTCCTTGTTTCGTCCTTTT CAACAACTTGAGTGGCTCTCCTTGTCATATAATCGCATAGCTGGTTGGGTTGAGATCAAAGAATCGTTGAGCAGCGTGCAGTACTTGCTATTGGACGGCA ATAATATTAACAAATTGGTAGCCTCAGGTCCAAACAACTTGAGATATCTATCCTTAAAAAATATCACAACCAATGGGAGTAGCTTCCAGTTACTATCATC ATTAGGAGCATTCCCAAACCTTACGACAGTTTATCTGAACGACAATGATTTTAAAGGAACAATATTAGAGTTGCAAAATTTGAGCTCCTTGGAAAAATTG TATCTAAACGGTTGTTTTCTAGATGAAAACTCTATTCAAATCCTTGGAGCTCTATCTTCTCTAAAATACCTATCGTTGTATGAAGTCAGTGGCATTGTAC CTTCTCAAGGCTTTCTTAATATTCTAAAAAACTTGGAGCACTTGTATTCGAGTAACTCTACTCTCGATAATAGCATCTTACAAAGTATTGGAACGATAAC CTCTCTTAAAATTTTAGAGTTGGTGAAGTGCAGACTAAATGGTCAATTACCAATCGGTCTATGTAACTTAAATAATCTCCAAGAGCTAGATATGAGGGAC AATGATATCAGTGGTTTCTTGATTCCATGTCTGGCAAATTTGACTTCCCTTCAACGACTAGATCTCTCTTCCAATCACTTAAAGATCCCTATGTCATTGA GCCCATTATACAACCTTTCAAAACTCAAGTCTTTTCATGGTTTGGATAATGAAATATACGCAGAAGAAGATGATCATAATTTGAGCCCAAAGTTCCAGTT ACAATCCCTCTATTTGAGCAATCATGGACAAGGTGCAAGAGCATTTCCCAGGTTCCTTTACCATCAGTTGAACCTACAATCTTTGGATCTTACAAACATC CAAATGAAAGGGGACTTTCCAAATTGGCTGATAGAGAACAACACATACCTAGAAAATCTTTATTTAGAAAATTGTTCTTTTTCTGGTCCATTCTTGTTGC CAAAGAATTCTCATATGAATTTGTCAATTTTAAGTATATCCATGAATTATTTACAAGGCCAAATCCCTTTAGAAATCGGAGCTCATTTGCCAAGGTTAAC AGTTTTATTAATGTCTCATAATGGTTTTAATGGAAGCATTCCATCCTCGTTGAGTAACATGAGTTTGTTGAGAGACTTAGACTTGTCCAACAATGTTTTG ACTGGTAGAATACCCGAGCATCTAACCACAAGTTTATGTTTGTTCAACTTTCTCATACTTTCAAACAACAGTTTGCAAGGGGTGATTCCTGATAGCATAT CTAATTGTAGCTCTTTGCAACTTTTGGATGTTAGCAACAACCATCTCTCTCCCAGAATCCCTGGATGGATATGGAGCATGTCTATTCTTGATTTTTTGGA CCTATCAAGGAACAATTTCTCTGGTCCTTTACCACCTACCATAAGTACTTCTTCAACATTGCGGTATGTGTATTTGTCTAGAAATAAGTTGCAAGGATTG ATTACAAAGGCATTCTATAACTTTTCTACGTTGTTGACATTAGATCTTTCCCATAATAATTTAATTGGTACAATTCCAGAATGGATTGGAAGCCTATCTA AGTTGAGATATCTTCTCTTGAGTTATAACAAACTCGAAGGTGAAATTCCAATTCAATTATGCAAGTTGGATGGGTTAACCCTAATTGATCTATCTCATAA CCATCTTTCTGGAAATATCCTCTCTTGCATGACATCCCTAGCTCCATTCTCAGCACTAACCGATGCCACTATTATTGAGACCTCACAACAATATTTGGAG TTTACAACAAAGAATGTATCTCTCATTTATAGAGGAAGCATTGTCAAATTATTTTCTGGAATTGATTTCTCATGCAACAATTTTACCGGGAAGATTCCTC CTGAAATTGAAAACTTGAGCAAGATCAAGGCATTGAACCTTTCACACAATAGTTTGATTGGACCAATTCCACCAACATTCTCGAGGTTAAAGGAAATAGA GAGCTTGGATCTTTCCCACAACAAATTGGATGGAGAAATCCCTCCTCAACTTACTGAACTATTTTCTCTAGAAATTTTCAGTGTGGCACACAATAATCTG TCCGGCAAGACTCCTGCAAGAGTTGCACAGTTTGCCACATTTGAGGAGAGCTGCTACAAGGATAACCCTTTTCTTTGTGGAGAACCACTACCCAAAATAT GTGGTGCGTCTATGCTACCATCACCAACTTCAATGAACAATGAAGATAATGGTGGCTTCATAGATATGGAGGTTTTCTATGTGAGCTTTGGGATTGCATA CATCATGGTGCTGGTGGTGATAGTTGCAGTTCTGTACATAAATCCATATTGGCGACGAGCTTGGTTTCGTTTCACTTTACTAAGAAAAACATCCTAA
AA sequence Show only first row Show all	>Potri.018G145522.1 pacid=42801028 polypeptide=Potri.018G145522.1.p locus=Potri.018G145522 ID=Potri.018G145522.1.v4.1 annot-version=v4.1 MGLFLHMSMVLAIMMVSLEGWLPLGCLEEERIALLHLKDAFNYPNGTSLPSWIKDDAHCCDWEHIECSSSTGRVIELVLDSTRNEEVGDWYFNASLFRPF QQLEWLSLSYNRIAGWVEIKESLSSVQYLLLDGNNINKLVASGPNNLRYLSLKNITTNGSSFQLLSSLGAFPNLTTVYLNDNDFKGTILELQNLSSLEKL YLNGCFLDENSIQILGALSSLKYLSLYEVSGIVPSQGFLNILKNLEHLYSSNSTLDNSILQSIGTITSLKILELVKCRLNGQLPIGLCNLNNLQELDMRD NDISGFLIPCLANLTSLQRLDLSSNHLKIPMSLSPLYNLSKLKSFHGLDNEIYAEEDDHNLSPKFQLQSLYLSNHGQGARAFPRFLYHQLNLQSLDLTNI QMKGDFPNWLIENNTYLENLYLENCSFSGPFLLPKNSHMNLSILSISMNYLQGQIPLEIGAHLPRLTVLLMSHNGFNGSIPSSLSNMSLLRDLDLSNNVL TGRIPEHLTTSLCLFNFLILSNNSLQGVIPDSISNCSSLQLLDVSNNHLSPRIPGWIWSMSILDFLDLSRNNFSGPLPPTISTSSTLRYVYLSRNKLQGL ITKAFYNFSTLLTLDLSHNNLIGTIPEWIGSLSKLRYLLLSYNKLEGEIPIQLCKLDGLTLIDLSHNHLSGNILSCMTSLAPFSALTDATIIETSQQYLE FTTKNVSLIYRGSIVKLFSGIDFSCNNFTGKIPPEIENLSKIKALNLSHNSLIGPIPPTFSRLKEIESLDLSHNKLDGEIPPQLTELFSLEIFSVAHNNL SGKTPARVAQFATFEESCYKDNPFLCGEPLPKICGASMLPSPTSMNNEDNGGFIDMEVFYVSFGIAYIMVLVVIVAVLYINPYWRRAWFRFTLLRKTS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G25470		AtRLP21	receptor like protein 21 (.1)		Potri.018G145522 [exp]	0	1
AT2G25470		AtRLP21	receptor like protein 21 (.1)		Potri.001G063700 [exp]	2.00	0.9547
AT5G36110		CYP716A1	"cytochrome P450, family 716, ...		Potri.001G440200 [exp]	3.46	0.9395
AT4G31980			unknown protein		Potri.003G206801 [exp]	4.58	0.9401
AT5G51790	bHLH	bHLH120	basic helix-loop-helix (bHLH) ...		Potri.015G134400 [exp]	5.19	0.9133
AT4G08850			Leucine-rich repeat receptor-l...		Potri.015G123400 [exp]	7.48	0.8998
					Potri.012G120952 [exp]	12.64	0.9069
AT2G37900			Major facilitator superfamily ...		Potri.017G145500 [exp]	13.41	0.8939
AT4G08850			Leucine-rich repeat receptor-l...		Potri.015G122900 [exp]	13.56	0.8605
					Potri.012G120768 [exp]	13.96	0.9005
AT2G17710			unknown protein		Potri.005G107900 [exp]	13.96	0.9344

Compare expression of checked genes

Potri.018G145522 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.