Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23520 86 / 2e-20 smr (Small MutS Related) domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T013000 [exp] 259 / 1e-86 AT5G23520 361 / 8e-122 smr (Small MutS Related) domain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004296 [exp] 102 / 2e-26 AT5G23520 267 / 8e-86 smr (Small MutS Related) domain-containing protein (.1) Lus10019219 [exp] 99 / 2e-25 AT5G23520 303 / 8e-100 smr (Small MutS Related) domain-containing protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.018G145524.1 pacid=42801863 polypeptide=Potri.018G145524.1.p locus=Potri.018G145524 ID=Potri.018G145524.1.v4.1 annot-version=v4.1 ATGGTCAGTGTGGATAATGATGCTGAAAAGGCTTGTGTTTTGTTGAATGGGATGGTTTCTAATGCTGACTTTGACGAGGATGAGGGAGCAAAATTTAACT CTGGTTTTAATAAAAGTCTTGCTGATGATATTGCTGATTTGAGCTCGACTCTTGAGGATGCTCTAAAAGATAATGATCATAACAATGATAATAACAGCAT AGAATTGAGGGAGGATGTAGGTGTTTCCTCTTCAGTTGATGCTGCTGCGAACATGAAACTGATCTTGGGGCACTTGAAGTCTATACCTGTTGAGCCTGAA TGGGAAGAGGATGATGTTTACTTGAGTCATCGAAAGAATGCTTTGAGAATGATGAGGTTAGCATCTCAACATTCCAGGGCTGCACTAATGCCTTTTTAA
AA sequence Show only first row Show all	>Potri.018G145524.1 pacid=42801863 polypeptide=Potri.018G145524.1.p locus=Potri.018G145524 ID=Potri.018G145524.1.v4.1 annot-version=v4.1 MVSVDNDAEKACVLLNGMVSNADFDEDEGAKFNSGFNKSLADDIADLSSTLEDALKDNDHNNDNNSIELREDVGVSSSVDAAANMKLILGHLKSIPVEPE WEEDDVYLSHRKNALRMMRLASQHSRAALMPF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G23520			smr (Small MutS Related) domai...		Potri.018G145524 [exp]	0	1
AT4G15080			DHHC-type zinc finger family p...		Potri.016G018400 [exp]	2.23	0.8413
AT1G29750		RKF1	receptor-like kinase in flower...		Potri.004G063200 [exp]	4.58	0.8239
AT2G47390			Prolyl oligopeptidase family p...		Potri.002G196000 [exp]	12.56	0.8281
AT2G28930		APK1B	protein kinase 1B (.1.2.3)		Potri.009G031300 [exp]	13.60	0.8213	APK1.1
AT4G13730			Ypt/Rab-GAP domain of gyp1p su...		Potri.006G069300 [exp]	14.42	0.8031
AT1G25472		CPuORF54	conserved peptide upstream ope...		Potri.010G125700 [exp]	17.74	0.8001
AT5G14220		HEMG2, MEE61, P...	MATERNAL EFFECT EMBRYO ARREST ...		Potri.001G333500 [exp]	18.70	0.8006
AT5G49760			Leucine-rich repeat protein ki...		Potri.004G232400 [exp]	19.44	0.8160
AT5G13020		AtEML3, ACK1	EMSY-like 3, Emsy N Terminus (...		Potri.001G229000 [exp]	19.74	0.8184
AT3G04940		ATCYSD1	cysteine synthase D1 (.1)		Potri.005G048132 [exp]	21.26	0.8218

Compare expression of checked genes

Potri.018G145524 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.