Plant FIBer expression Database

Potri.018G145526 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.T013100
[exp]
254 / 1e-85 ND /
Flax homologues

No hit found
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0133 AT14A-like PF05633 BPS1 Protein BYPASS1-related
Representative CDS sequence
>Potri.018G145526.1 pacid=42801929 polypeptide=Potri.018G145526.1.p locus=Potri.018G145526 ID=Potri.018G145526.1.v4.1 annot-version=v4.1
ATGGGAGAATTAGGTGAGATCTTGAAAGGTTCCAAGGATGTGGCATCAATGGTGTTTCAAATTCTTGGACTAGCTCTGTCATCTAAATCATCAAAGCATA
GCTTAATAACATCTCAGTATAAGCCAATAATCACTTCTTCATGGTCACGTTCTTTAAGAGAGCTGCAAAATCAAGTGGAGAGGGAAAACGATCACCAAGA
AGGTGAAAAACGTAGCCCAGCCATGCTCTCAGAATTGCAACAGACAATGGCATTGGTAGGGGAACTGAGGAGGAAGAATCATATTGGAGCTACAAGGCAA
AGAGAGGCTGTTGAGGAGTTGGATAGAAGTTGTGGGAAATTAGAGGATGAGATTAGAATTTTAGAGAAAAGAGTGAGGGACTTGTATAGGCAGTTGGTTT
CAATTAGGACGGCTTTATTGGGAATTTTGTCCCAACCCTAA
AA sequence
>Potri.018G145526.1 pacid=42801929 polypeptide=Potri.018G145526.1.p locus=Potri.018G145526 ID=Potri.018G145526.1.v4.1 annot-version=v4.1
MGELGEILKGSKDVASMVFQILGLALSSKSSKHSLITSQYKPIITSSWSRSLRELQNQVERENDHQEGEKRSPAMLSELQQTMALVGELRRKNHIGATRQ
REAVEELDRSCGKLEDEIRILEKRVRDLYRQLVSIRTALLGILSQP

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.018G145526
[exp]
0 1
Potri.001G073166
[exp]
3.87 0.9799
AT5G45670 GDSL-like Lipase/Acylhydrolase... Potri.011G076500
[exp]
5.00 0.9713
AT1G21695 hydroxyproline-rich glycoprote... Potri.002G080200
[exp]
7.93 0.9378
AT2G41810 Protein of unknown function, D... Potri.006G050400
[exp]
7.93 0.9420
AT5G45580 GARP Homeodomain-like superfamily p... Potri.003G100100
[exp]
7.93 0.7129
AT1G21695 hydroxyproline-rich glycoprote... Potri.005G181200
[exp]
9.38 0.9396
AT4G22165 F-box family protein with a do... Potri.004G137700
[exp]
9.53 0.9245
AT5G05340 Peroxidase superfamily protein... Potri.014G143200
[exp]
10.00 0.9324 Pt-PRX1.11
AT1G57775 Protein of unknown function (D... Potri.004G110800
[exp]
10.09 0.9206
AT2G01210 Leucine-rich repeat protein ki... Potri.004G095700
[exp]
10.24 0.8348

Potri.018G145526 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.