Plant FIBer expression Database

Potri.018G145538 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G27220 57 / 6e-09 NB-ARC domain-containing disease resistance protein (.1)
AT1G12210 45 / 4e-05 RFL1 RPS5-like 1 (.1)
AT1G12220 44 / 6e-05 RPS5 RESISTANT TO P. SYRINGAE 5, Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2)
AT4G26090 42 / 0.0002 RPS2 RESISTANT TO P. SYRINGAE 2, NB-ARC domain-containing disease resistance protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.T023966
[exp]
528 / 0 AT4G27220 307 / 2e-89 NB-ARC domain-containing disease resistance protein (.1)
Potri.018G135600
[exp]
404 / 2e-133 AT4G27220 338 / 7e-100 NB-ARC domain-containing disease resistance protein (.1)
Potri.018G136301
[exp]
396 / 2e-130 AT4G27220 329 / 8e-97 NB-ARC domain-containing disease resistance protein (.1)
Potri.018G136500
[exp]
385 / 8e-127 AT4G27220 358 / 8e-108 NB-ARC domain-containing disease resistance protein (.1)
Potri.T045200
[exp]
303 / 3e-96 AT4G27220 348 / 1e-104 NB-ARC domain-containing disease resistance protein (.1)
Potri.T012000
[exp]
281 / 1e-86 AT4G27220 314 / 1e-89 NB-ARC domain-containing disease resistance protein (.1)
Potri.018G145562
[exp]
259 / 3e-82 AT4G27220 224 / 1e-62 NB-ARC domain-containing disease resistance protein (.1)
Potri.018G136700
[exp]
261 / 5e-80 AT4G27190 323 / 4e-94 NB-ARC domain-containing disease resistance protein (.1)
Potri.T045000
[exp]
257 / 9e-79 AT4G27220 322 / 1e-94 NB-ARC domain-containing disease resistance protein (.1)
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.018G145538.1 pacid=42801818 polypeptide=Potri.018G145538.1.p locus=Potri.018G145538 ID=Potri.018G145538.1.v4.1 annot-version=v4.1
ATGTTTCCAAAGGACATTCAACAACTGACTATTGATAATAATGATGATGCAACAAGTTTATGCGATGTTTCCTCTCAAATAAAGTATGCAACTGATCTGG
AGGATATCAAGATTTTTAGTTGCTATAGCATGGAGAGCTTGGTTTCATCTTCTTGGTTCCGCTCTGCTCCACTACCATCTCCATCTTACAACGGTATATT
TTCTGGTCTTAAACGGTTTAATTGTTCTGGTTGTAAGAGCATGAAGAAGTTGTTCCCTCTTGTCTTGCTGCCAAGCCTCGTAAACCTCGAAAATATTAGA
GTTTCTGACTGTGAGAAGATGGAGGAGATAATAGGTGGAACAAGACCAGATGAAGAGGGGGTTATGGGTGAAGAAACCAGCAGCAGCAATATCGAATTCA
AACTCCCAAAGTTAACGATGTTGGCATTGGAGGGATTACCAGAACTGAAAAGGATTTGTAGTGCAAAACTGATTTGCGATTCTATCGGAGCAATTGACGT
AAGAAATTGCGAGAAAATGGAGGAGATAATAGGTGGAACAAGATCAGATGAAGAAGGGGTTATGGGTGAAGAAAGCAGCACCGATCTCAAACTCCCCAAG
TTAATATTTCTGCAATTGATTAGATTACCAGAACTGAAAAGCATTTACAGTGCAAAATTGATTTGCGATTCTCTCCAATTAATTCAAGTAAGGAATTGTG
AGAAGCTGAAGAGGATGGGAATTTGTCTTTCGTTGCTTGAAAATGGCGAGCATCCTAATGCTAAGGATGTCCTTCGTCCCTTTTTAAAGTTGGTTAAAGG
ATGA
AA sequence
>Potri.018G145538.1 pacid=42801818 polypeptide=Potri.018G145538.1.p locus=Potri.018G145538 ID=Potri.018G145538.1.v4.1 annot-version=v4.1
MFPKDIQQLTIDNNDDATSLCDVSSQIKYATDLEDIKIFSCYSMESLVSSSWFRSAPLPSPSYNGIFSGLKRFNCSGCKSMKKLFPLVLLPSLVNLENIR
VSDCEKMEEIIGGTRPDEEGVMGEETSSSNIEFKLPKLTMLALEGLPELKRICSAKLICDSIGAIDVRNCEKMEEIIGGTRSDEEGVMGEESSTDLKLPK
LIFLQLIRLPELKSIYSAKLICDSLQLIQVRNCEKLKRMGICLSLLENGEHPNAKDVLRPFLKLVKG

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G27220 NB-ARC domain-containing disea... Potri.018G145538
[exp]
0 1
AT4G27220 NB-ARC domain-containing disea... Potri.018G136301
[exp]
5.47 0.7992
AT4G27220 NB-ARC domain-containing disea... Potri.019G014340
[exp]
7.34 0.7841
AT1G20980 SBP ATSPL14, SPL1R2... squamosa promoter binding prot... Potri.005G258700
[exp]
8.71 0.7770
AT5G17680 disease resistance protein (TI... Potri.019G068200
[exp]
12.64 0.7558
AT2G26650 AKT1, ATAKT1 K+ transporter 1, K+ transport... Potri.018G071400
[exp]
13.11 0.7015 AKT1.2
AT4G27220 NB-ARC domain-containing disea... Potri.018G145582
[exp]
13.74 0.7590
AT5G64220 CAMTA Calmodulin-binding transcripti... Potri.010G153100
[exp]
15.87 0.7446
AT5G17680 disease resistance protein (TI... Potri.017G104901
[exp]
15.96 0.7427
AT4G12010 Disease resistance protein (TI... Potri.017G103101
[exp]
18.33 0.7226
AT4G27220 NB-ARC domain-containing disea... Potri.019G014334
[exp]
19.49 0.7745

Potri.018G145538 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.