Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27220 271 / 4e-81 NB-ARC domain-containing disease resistance protein (.1) AT4G10780 243 / 7e-71 LRR and NB-ARC domains-containing disease resistance protein (.1) AT1G12210 242 / 9e-71 RFL1 RPS5-like 1 (.1) AT4G27190 239 / 5e-69 NB-ARC domain-containing disease resistance protein (.1) AT5G63020 230 / 2e-66 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G12290 230 / 2e-66 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT1G12220 228 / 1e-65 RPS5 RESISTANT TO P. SYRINGAE 5, Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT1G12280 226 / 6e-65 LRR and NB-ARC domains-containing disease resistance protein (.1) AT1G63360 226 / 8e-65 Disease resistance protein (CC-NBS-LRR class) family (.1) AT5G43730 223 / 1e-63 Disease resistance protein (CC-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T023966 [exp] 979 / 0 AT4G27220 307 / 2e-89 NB-ARC domain-containing disease resistance protein (.1) Potri.T045300 [exp] 820 / 0 AT4G27220 279 / 1e-79 NB-ARC domain-containing disease resistance protein (.1) Potri.T013566 [exp] 779 / 0 AT4G27220 231 / 2e-63 NB-ARC domain-containing disease resistance protein (.1) Potri.018G136301 [exp] 711 / 0 AT4G27220 329 / 8e-97 NB-ARC domain-containing disease resistance protein (.1) Potri.018G145564 [exp] 711 / 0 AT4G27220 236 / 1e-68 NB-ARC domain-containing disease resistance protein (.1) Potri.T044800 [exp] 707 / 0 AT4G27220 310 / 3e-91 NB-ARC domain-containing disease resistance protein (.1) Potri.T045200 [exp] 707 / 0 AT4G27220 348 / 1e-104 NB-ARC domain-containing disease resistance protein (.1) Potri.018G145566 [exp] 692 / 0 AT4G27220 348 / 7e-105 NB-ARC domain-containing disease resistance protein (.1) Potri.019G014312 [exp] 688 / 0 AT4G27220 300 / 3e-86 NB-ARC domain-containing disease resistance protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018937 [exp] 121 / 1e-28 AT3G07040 587 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10024173 [exp] 119 / 5e-28 AT3G14460 681 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10028639 [exp] 118 / 1e-27 AT3G07040 579 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10022351 [exp] 116 / 5e-27 AT3G14470 369 / 1e-108 NB-ARC domain-containing disease resistance protein (.1) Lus10039509 [exp] 115 / 8e-27 AT3G14460 613 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10005218 [exp] 108 / 2e-24 AT3G14470 379 / 2e-113 NB-ARC domain-containing disease resistance protein (.1) Lus10039540 [exp] 105 / 2e-23 AT3G14470 727 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10020016 [exp] 103 / 5e-23 AT3G07040 563 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10026132 [exp] 102 / 2e-22 AT3G14460 594 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10014712 [exp] 101 / 4e-22 AT3G07040 492 / 3e-159 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF07693 [poplar] [flax] KAP_NTPase KAP family P-loop domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.018G145540.1 pacid=42801065 polypeptide=Potri.018G145540.1.p locus=Potri.018G145540 ID=Potri.018G145540.1.v4.1 annot-version=v4.1 ATGGATGATGAAGTCTCGACAATTGGCATTTACGGAATGGGGGGAGTCGGTAAAACGACAATGATGAAACATATCCATAATAAGCTTCTAGAAAGACTAG GCATTTCTTATTGTGTTTACTGGGTGACCGTGTCTCGAGATTTCAGCATTGAAAGATTGCAAAATCTTATTGCTAAATGTCTTGGATTTGATCTTTCAAG TGAAGATGATGATCTGCGTAGAGCTGTCAAATTGTCGAAAGAACTAAGGAAGAAACAAAAATGGATTCTAATTTTAGATGATTTGTGGAACACTTTTGAG CTACACGAAGTGGGAATTCCTGACCCGGTGAAAGGATGCAAGCTGATTATGACAACTCGATCTGAAAGGGTTTGTCAACGGATGGATAGCCAAAACAAAA TCAAAGTGAAGCCACTTTCGGAGAGTGAAGCTTGGGATTTGTTCAACGAAAAACTTGGACATGGCATAACATTTTGCCAAGATGTGGAACGAATTGCAGT AGATATTGCAAGGGAATGTGCTGGTTTGCCATTGGGCATTATTGCAATCGCAGGAAGCTTGAGGAGGGTGGATGACCTACATGAGTGGAGGAATACATTG AAGAAATTGAAAAAATCAAAATGTAGGGACATGGAAGATAAGGTATTCCGGTTGTTGAGGTTTAGTTATGACCAGTTACATGATTTAGCACTACAACAGT GTCTCTTAAACTGTGCATTATTTCCTGAAGATCATGAGATTGTAAGGAAGGAGTTGATAGATTATTTGATCGATGAGGGGGTAATTGAAAGAGTGGAGAG CAGGCAAGAAGCAGTTGACGAGGGCCACACTATGCTTAATAGACTTGAAAGTGTCTGCCTATTGGAAGGTGCTAAAAACATGTATGGTGATAGATGTGTC AAGATGCATGACTTGATTAGGGATATGGCCATCCAAATACTGCAAGAGAACTCTCAAGGCATGGTTAAAGCAGGTGCACGGTTAAGAGAAGTGCCGGGTG CAGAGGAGTGGACAGAGAATCTTACTAGAGTTTCACTGATGCATAACCAGATTGAAGAAATTCCTTCCACGCATTCACCGAGGTGTCCCAGCCTTTCAAC TCTATTGTTATGCGACAATTCACAGTTGCAATTTATTGCAGATTCATTTTTTGAGCAGTTGCATGGGCTCAAGGTTCTTGATCTGTCTCGTACAGGTATT ACAAAACTACCTGATTCTGTCTCTGAATTGGTGAGTCTCACTGCATTACTGCTCATTGATTGTAAGATGTTAAGGCATTTACCGTCATTAGAAAAGCTCA GGGCACTGAAGAGGTTAGATCTCTCTGGTACTCGGGCACTTGAAAAGATTCCTCAAGGCATGGAATGTCTATGCAACCTGAGGTATCTTAGAATGAATGG ATGTGGTGAAAAGGAGTTTCCTAGTGGGTTGTTACCTAAGCTCTCTCACCTGCAAGTCTTTGTATTGGAGGAGTGGATTCCTCCTGCTACCAAAGATAAT AGAAGAGGACAACCTGCTCCGGTAACAGTTAAAGGAAAGGAAGTAGGAAAGTTTGGTATGCCATTTTGA
AA sequence Show only first row Show all	>Potri.018G145540.1 pacid=42801065 polypeptide=Potri.018G145540.1.p locus=Potri.018G145540 ID=Potri.018G145540.1.v4.1 annot-version=v4.1 MDDEVSTIGIYGMGGVGKTTMMKHIHNKLLERLGISYCVYWVTVSRDFSIERLQNLIAKCLGFDLSSEDDDLRRAVKLSKELRKKQKWILILDDLWNTFE LHEVGIPDPVKGCKLIMTTRSERVCQRMDSQNKIKVKPLSESEAWDLFNEKLGHGITFCQDVERIAVDIARECAGLPLGIIAIAGSLRRVDDLHEWRNTL KKLKKSKCRDMEDKVFRLLRFSYDQLHDLALQQCLLNCALFPEDHEIVRKELIDYLIDEGVIERVESRQEAVDEGHTMLNRLESVCLLEGAKNMYGDRCV KMHDLIRDMAIQILQENSQGMVKAGARLREVPGAEEWTENLTRVSLMHNQIEEIPSTHSPRCPSLSTLLLCDNSQLQFIADSFFEQLHGLKVLDLSRTGI TKLPDSVSELVSLTALLLIDCKMLRHLPSLEKLRALKRLDLSGTRALEKIPQGMECLCNLRYLRMNGCGEKEFPSGLLPKLSHLQVFVLEEWIPPATKDN RRGQPAPVTVKGKEVGKFGMPF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G27220			NB-ARC domain-containing disea...		Potri.018G145540 [exp]	0	1
AT2G35610		XEG113	xyloglucanase 113 (.1)		Potri.004G235800 [exp]	5.47	0.8591
AT4G35160			O-methyltransferase family pro...		Potri.013G122000 [exp]	7.74	0.8579
AT1G20510		OPCL1	OPC-8:0 CoA ligase1 (.1.2)		Potri.005G248500 [exp]	8.66	0.8474	Ptr4CL14
AT3G14470			NB-ARC domain-containing disea...		Potri.014G003200 [exp]	10.19	0.8372
AT4G27220			NB-ARC domain-containing disea...		Potri.018G136500 [exp]	12.24	0.8279
AT4G27220			NB-ARC domain-containing disea...		Potri.011G124000 [exp]	15.42	0.8419
AT2G22300	CAMTA	SR1, CAMTA3	CALMODULIN-BINDING TRANSCRIPTI...		Potri.005G075100 [exp]	16.06	0.8471
AT5G07980			dentin sialophosphoprotein-rel...		Potri.012G061400 [exp]	17.23	0.8300
AT1G04120		ATABCC5, ABCC5,...	MULTIDRUG RESISTANCE PROTEIN 5...		Potri.002G255800 [exp]	17.54	0.7915
AT1G20670			DNA-binding bromodomain-contai...		Potri.004G206200 [exp]	19.28	0.7992

Compare expression of checked genes

Potri.018G145540 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.