Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27190 210 / 2e-58 NB-ARC domain-containing disease resistance protein (.1) AT4G27220 204 / 1e-56 NB-ARC domain-containing disease resistance protein (.1) AT5G43730 200 / 2e-55 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G15890 192 / 2e-52 Disease resistance protein (CC-NBS-LRR class) family (.1) AT5G63020 189 / 2e-51 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G12220 188 / 3e-51 RPS5 RESISTANT TO P. SYRINGAE 5, Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT5G43740 187 / 5e-51 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT4G10780 187 / 1e-50 LRR and NB-ARC domains-containing disease resistance protein (.1) AT1G12290 184 / 7e-50 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT1G12210 182 / 4e-49 RFL1 RPS5-like 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T044500 [exp] 1090 / 0 AT4G27190 209 / 2e-58 NB-ARC domain-containing disease resistance protein (.1) Potri.018G145556 [exp] 1000 / 0 AT4G27190 192 / 2e-52 NB-ARC domain-containing disease resistance protein (.1) Potri.018G145532 [exp] 809 / 0 AT4G27190 266 / 2e-73 NB-ARC domain-containing disease resistance protein (.1) Potri.018G145528 [exp] 626 / 0 AT5G43730 188 / 3e-53 Disease resistance protein (CC-NBS-LRR class) family (.1) Potri.019G020500 [exp] 586 / 0 AT4G27220 326 / 2e-95 NB-ARC domain-containing disease resistance protein (.1) Potri.019G020102 [exp] 538 / 2e-179 AT4G27220 297 / 6e-85 NB-ARC domain-containing disease resistance protein (.1) Potri.T023966 [exp] 506 / 4e-169 AT4G27220 307 / 2e-89 NB-ARC domain-containing disease resistance protein (.1) Potri.019G014380 [exp] 506 / 5e-168 AT4G27220 302 / 5e-87 NB-ARC domain-containing disease resistance protein (.1) Potri.019G002800 [exp] 481 / 4e-159 AT4G27220 317 / 9e-93 NB-ARC domain-containing disease resistance protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039509 [exp] 136 / 2e-33 AT3G14460 613 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10039540 [exp] 128 / 6e-31 AT3G14470 727 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10024173 [exp] 124 / 2e-29 AT3G14460 681 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10002736 [exp] 118 / 1e-28 AT3G14470 317 / 1e-98 NB-ARC domain-containing disease resistance protein (.1) Lus10016316 [exp] 115 / 1e-26 AT3G14470 494 / 6e-156 NB-ARC domain-containing disease resistance protein (.1) Lus10026132 [exp] 114 / 3e-26 AT3G14460 594 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10022351 [exp] 114 / 4e-26 AT3G14470 369 / 1e-108 NB-ARC domain-containing disease resistance protein (.1) Lus10018937 [exp] 112 / 1e-25 AT3G07040 587 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10041243 [exp] 108 / 1e-24 AT3G07040 526 / 1e-172 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10042117 [exp] 108 / 2e-24 AT3G14470 354 / 2e-105 NB-ARC domain-containing disease resistance protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF01637 [poplar] [flax] ATPase_2 ATPase domain predominantly from Archaea
Representative CDS sequence Show only first row Show all	>Potri.018G145548.1 pacid=42801915 polypeptide=Potri.018G145548.1.p locus=Potri.018G145548 ID=Potri.018G145548.1.v4.1 annot-version=v4.1 ATGACTAGACCGAATGATCCATTTTGGGATCATGTTGAGAAGCTGGATGATGGTCGTTTCAACTGTAAATTTTGTGGCTATAAATTTGCTGCTGCTGCTT CCGTTACGATGATCAAATGGCATTTGTCAGGAGTCCAAGGGCGTGGTGTTACAATTTGTAGACAAGTGCAGAATCTGAAGAGAGGTAGCTCTCTTGAGAG GCCATCAATTAATCAAGCCGACGAGCCTCGAGGAGATTCATCCCCGCCAAAGGATCTATTGTGTCTTGGCCTTGGAAGTTATCATGATCAACTCTGTTCT CCATCTGCAAAAAACGATGTCATTATGGATGATGTGCAGAACATATTTAGAGAGAAAACAGAACCAGTAGCTAGTATGTTGGAGCAAAGCTATGCAATAC TTAATAAATTGGCAGGTGATGATGGAAGGATACAAGTGGGAGTTCAGGCCATCGAACAAGGTGCAGAGGAAGAGTTAATTTGTTCGCATCCAGAAGCAGG AAGTGGCATGGAAAACACCTGTGAAGGATTTATTCAGCATGTTGACAGAAATGTCTCCCCAGAACGAGCTAGATTAATGGAGAACAGTAGTGGAAGATTA GTGCAGTCCAGCACAAGTGCCAGCTCTACAAAGCTAGTGGGTCGAGCATTTGAACAGAATATAAAGGTGATACGGTCTTGGTTAATGGATGATGAAATCT CAACCATTGGCATTTATGGAATGGGAGGAGTTGGTAAAACGACATTGCTGCAACATATCCGCAATGAGCTTCTAGAAAGACAAGATATTTCTCGTAGTGT TTACTGGGTGAATGTGCCTCAAGGTTTCAAGATTGAAGAATTGCAAGATCTTATTGCTAAATATCTTCATTTAGATCTTTCAAGCAAAGATGATGATCTG TCTAGAGCTGTCAAACTGGCAAAAGAACTAGCAAAGAAACAAAAATGGATTCTCATTTTAGATGATTTGTGGAACTCTTTTGAGCCACAAGAAGTGGGGA TTCCTATCCCATTGGAAGGATCCAAGCTCATTATGACAACTCGATCAGAAATGGTTTGTCGTCAGATGAATAGCCGAAACAATATAAGAGTGGATGCTCT TTCTGATGAAGAATCTTGGACCTTGTTCACGGAGAGGCTTGGACAAGACATACCACTTTCTCCAGAAGTGGAACGAATTGTTGTAGATGTTGCAAGGGAA TGTGCTGGTTTGCCTTTGGGAATTGTTACATTAGCAGCAAGTTTGAAGGGAATCGATGACCTACATGAGTGGAGGACTACATTGAAGAGATTGAAAGAAT CAAATTTTTGGGACATGGAAGATCAAATATTCCAGATATTAAGATTGAGTTATGATTGTTTAGATGATTCAGCACAACAATGTTTTGTATATTGTGCATT ATTTGATGAACGTCATAAGATTGAAAGGGAGGTGTTGATAGATTATTTCATCGAGGAGGGGATAATTAAAGAAATGAGTAGGCAAGCAGCACTTGACAAG GGCCACTCAATTCTTGATAGACTAGAAAATATCTGCTTATTGGAAAGAATTGATGGTGGTAGTGCTGTCAAGATGCATGACTTGCTTAGGGACATGGCCA TCCAAATACTGGATGAGTACTCTCTAGTCATGGGTTAA
AA sequence Show only first row Show all	>Potri.018G145548.1 pacid=42801915 polypeptide=Potri.018G145548.1.p locus=Potri.018G145548 ID=Potri.018G145548.1.v4.1 annot-version=v4.1 MTRPNDPFWDHVEKLDDGRFNCKFCGYKFAAAASVTMIKWHLSGVQGRGVTICRQVQNLKRGSSLERPSINQADEPRGDSSPPKDLLCLGLGSYHDQLCS PSAKNDVIMDDVQNIFREKTEPVASMLEQSYAILNKLAGDDGRIQVGVQAIEQGAEEELICSHPEAGSGMENTCEGFIQHVDRNVSPERARLMENSSGRL VQSSTSASSTKLVGRAFEQNIKVIRSWLMDDEISTIGIYGMGGVGKTTLLQHIRNELLERQDISRSVYWVNVPQGFKIEELQDLIAKYLHLDLSSKDDDL SRAVKLAKELAKKQKWILILDDLWNSFEPQEVGIPIPLEGSKLIMTTRSEMVCRQMNSRNNIRVDALSDEESWTLFTERLGQDIPLSPEVERIVVDVARE CAGLPLGIVTLAASLKGIDDLHEWRTTLKRLKESNFWDMEDQIFQILRLSYDCLDDSAQQCFVYCALFDERHKIEREVLIDYFIEEGIIKEMSRQAALDK GHSILDRLENICLLERIDGGSAVKMHDLLRDMAIQILDEYSLVMG

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G27190			NB-ARC domain-containing disea...		Potri.018G145548 [exp]	0	1
AT5G58560		FOLK	farnesol kinase, Phosphatidate...		Potri.009G074700 [exp]	1.73	0.8068
AT4G24520		AR1, ATR1	ARABIDOPSIS CYTOCHROME REDUCTA...		Potri.005G153800 [exp]	3.46	0.7164
AT5G58560		FOLK	farnesol kinase, Phosphatidate...		Potri.009G074800 [exp]	4.69	0.7549
AT3G07990		SCPL27	serine carboxypeptidase-like 2...		Potri.010G220100 [exp]	10.39	0.7443
AT2G23690			unknown protein		Potri.005G130200 [exp]	12.40	0.6949
AT5G16290		VAT1	VALINE-TOLERANT 1 (.1.2)		Potri.010G178200 [exp]	13.49	0.6835
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Potri.006G110000 [exp]	16.52	0.6874
AT2G40860			protein kinase family protein ...		Potri.016G030800 [exp]	29.84	0.6636
AT5G48960			HAD-superfamily hydrolase, sub...		Potri.010G002900 [exp]	30.74	0.7096
AT5G17850			Sodium/calcium exchanger famil...		Potri.019G040301 [exp]	40.98	0.6114

Compare expression of checked genes

Potri.018G145548 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.