Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G15020 54 / 8e-09 hAT transposon superfamily (.1.2) AT1G79740 52 / 4e-08 hAT transposon superfamily (.1) AT3G22220 49 / 7e-07 hAT transposon superfamily (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G145558 [exp] 182 / 1e-53 AT4G27220 188 / 1e-49 NB-ARC domain-containing disease resistance protein (.1) Potri.T044600 [exp] 181 / 2e-53 AT4G27220 192 / 7e-51 NB-ARC domain-containing disease resistance protein (.1) Potri.T012000 [exp] 158 / 6e-45 AT4G27220 314 / 1e-89 NB-ARC domain-containing disease resistance protein (.1) Potri.018G137900 [exp] 116 / 2e-30 AT4G27220 354 / 4e-106 NB-ARC domain-containing disease resistance protein (.1) Potri.T046051 [exp] 113 / 3e-30 AT4G27220 63 / 1e-10 NB-ARC domain-containing disease resistance protein (.1) Potri.019G009198 [exp] 114 / 1e-29 AT4G27220 295 / 2e-83 NB-ARC domain-containing disease resistance protein (.1) Potri.019G002800 [exp] 110 / 2e-28 AT4G27220 317 / 9e-93 NB-ARC domain-containing disease resistance protein (.1) Potri.019G020500 [exp] 107 / 2e-27 AT4G27220 326 / 2e-95 NB-ARC domain-containing disease resistance protein (.1) Potri.019G011169 [exp] 107 / 3e-27 AT4G27220 301 / 5e-86 NB-ARC domain-containing disease resistance protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000517 [exp] 41 / 0.0001 AT4G15020 122 / 8e-33 hAT transposon superfamily (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.018G145554.1 pacid=42800883 polypeptide=Potri.018G145554.1.p locus=Potri.018G145554 ID=Potri.018G145554.1.v4.1 annot-version=v4.1 ATGAATCCAGAGCCACTGATCAAAATGCTTCGACAGAATGATCCAGTTTCGCATCATGTTGACAGATCTTTTGGGGAATATGTTGAAAAGATGGATGATG GTCGCATGAGGTGTAAGTTTTGTAGGCATTTATTTGGCAACGGTACTTCCATTTCGAGGATCAAATTGCATTTAGCAGGAGTGACAGGCCGTGGTGTTAA AATTTGTGGACAAGTGCCTCAAGATGTCCAAGACGCAGCCCTTCCAGCAATTGATGGCCGTCCAGGAAGAAAACGTAAAACTGTAGCAGGCTCAAGAAAT AACGAGGTCCAAAGAAGAAATTGGATAAAAATAATATCAGGATGGACTTTGCTGATGACAAACTTAATTCTAGAGTTTGCATCTGCAGTTTTTGACCAGC TGGGTTATGCACCAATTGGCATGGTGTTGGCATTTGTAGCTTTGCTTCTTGCTACTGCTGAACTCATTTACATGGCACGAAAGGAAATAATGGACCTGTT GCCCTGTTTCCATCGCCCATCGACCAGTACTTCCGCACCTTGA
AA sequence Show only first row Show all	>Potri.018G145554.1 pacid=42800883 polypeptide=Potri.018G145554.1.p locus=Potri.018G145554 ID=Potri.018G145554.1.v4.1 annot-version=v4.1 MNPEPLIKMLRQNDPVSHHVDRSFGEYVEKMDDGRMRCKFCRHLFGNGTSISRIKLHLAGVTGRGVKICGQVPQDVQDAALPAIDGRPGRKRKTVAGSRN NEVQRRNWIKIISGWTLLMTNLILEFASAVFDQLGYAPIGMVLAFVALLLATAELIYMARKEIMDLLPCFHRPSTSTSAP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G15020			hAT transposon superfamily (.1...		Potri.018G145554 [exp]	0	1
AT5G06740			Concanavalin A-like lectin pro...		Potri.001G455500 [exp]	1.00	0.8656
AT4G27220			NB-ARC domain-containing disea...		Potri.019G014370 [exp]	1.41	0.8379
AT1G76690		OPR2, ATOPR2	ARABIDOPSIS 12-OXOPHYTODIENOAT...		Potri.013G103000 [exp]	5.83	0.7759
AT1G65840		ATPAO4	polyamine oxidase 4 (.1)		Potri.017G144001 [exp]	6.92	0.8098
AT3G12740		ALIS1	ALA-interacting subunit 1 (.1)		Potri.010G173900 [exp]	7.48	0.7795
AT2G20120		COV1	CONTINUOUS VASCULAR RING, Prot...		Potri.018G082100 [exp]	8.36	0.7555	Pt-COV1.3
					Potri.005G084100 [exp]	13.49	0.7227
AT2G16900			Arabidopsis phospholipase-like...		Potri.004G176100 [exp]	15.29	0.8166
AT5G46060			Protein of unknown function, D...		Potri.011G059400 [exp]	17.49	0.7738
AT1G16390		3-Oct, ATOCT3	organic cation/carnitine trans...		Potri.016G039000 [exp]	21.23	0.7515

Compare expression of checked genes

Potri.018G145554 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.