Plant FIBer expression Database

Potri.018G145560 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G08450 801 / 0 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.T044700
[exp]
1444 / 0 AT5G08450 796 / 0.0 unknown protein
Potri.004G135800
[exp]
1293 / 0 AT5G08450 860 / 0.0 unknown protein
Potri.T044400
[exp]
1079 / 0 AT5G08450 523 / 7e-176 unknown protein
Potri.018G145542
[exp]
550 / 0 AT5G08450 142 / 3e-37 unknown protein
Potri.018G145546
[exp]
495 / 6e-172 AT5G08450 386 / 8e-129 unknown protein
Potri.018G136502
[exp]
85 / 5e-20 AT5G08450 44 / 6e-07 unknown protein
Potri.018G145552
[exp]
77 / 3e-17 AT5G08450 75 / 8e-18 unknown protein
Potri.018G145550
[exp]
0 / 1 AT4G15093 82 / 3e-20 catalytic LigB subunit of aromatic ring-opening dioxygenase family (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10004299
[exp]
951 / 0 AT5G08450 852 / 0.0 unknown protein
Lus10019217
[exp]
942 / 0 AT5G08450 858 / 0.0 unknown protein
Lus10004298
[exp]
97 / 2e-23 AT5G08450 130 / 5e-36 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0513 LCCL-domain PF08642 Rxt3 Histone deacetylation protein Rxt3
Representative CDS sequence
>Potri.018G145560.1 pacid=42800964 polypeptide=Potri.018G145560.1.p locus=Potri.018G145560 ID=Potri.018G145560.1.v4.1 annot-version=v4.1
ATGAGTGGTGCTCCTGTTAAAAGATCGCATGAAGAGGGTAGTCATTCTTCTTCTTTGAAATTCCCTCCTCATGAAGATACAGGTTCGTATCCTAAGCTGA
CATCAGGGGTTTCAAATGAGTTCCATCTACCATATGAGATGGGTCCAGATGCTAGGGTGGCTAAGATTCCCAGAACTGAGTCTCGAGACGTAGATAGAAG
ATCACCTTTGCATTCGATGTATCGAATCCCACCATCTTCAAATGAATCACACATGGATTCTCATTTGAATGTTGCTCCTGAAAGAAGGCCTGAATCAAGG
GATTCCAAGGACTGCAGAGACTACCGGATTGAAAACCGTGAGCCAAGGACTGATGCAAGAGAGATGTATGGCGAGGCAAAGAGGGATTCACAAAGTGTTA
AAAATGAAAAGGATGTGAGGTTTGATAGTAGAGGGGATGACAATAAAGAAGTAAAGCATGACAGAGAAGCTCGTATTGAGCCGAAGAATGACATGAAGAT
AGAAAAGGATGGTTTTGGTCCTGCAAGTAGTCAGGTGAATTGGAAGGAACCAAAAGAATACCATAGGGGAAAGAGATGTTTGGAATCTGCAGGTGTACAT
GTGGATCCTTGGCATATATCACGTGGAAATTCCCAAGGCCCTGTTGAGATTGAAAAGGAAGTCGTCAGTATCGAGGAGAGGGATCATGCCAAAGTTCATG
AGGCAGTTGGAGAAAATAAAGTTGAATTGAAAGGTGACGATAGATTTAAAGACAAGGATAGGAAGAGGAAAGATTTGAAGCTCCGGGAATGGGGAGACAG
AGATAAGGAAAGAAGTGATCGAAGGGGAAGTATGCAAGTAGGCAACAGTATTGCTGAGGGAAAAGAGTTGGTGAAGGAAGAGAGAGAAGGAGAGAGGTGG
GAGTGGGAGAGGAAGGATCTGTCAAAAGACAGGGAAAGGTTAAAAGAGAGGGAGAAGGACCACATGAAAATAGAATCAGGAACTGGAGCTGAAAAGGAGG
GTTTGCACAATGAAAAGGAGTCTTTGGATGGATCTGTTAGAATTTCAGAACAGGAAAATCCAGCTTTGGAGCCAAAGAAACAGAAAGATTTTGATAACTG
GAAAAATGTCGATAAAGAAGCTAAAGATAAAAAGAAAGAAAGAGAAGCCGGCATAGAAGGAGATAGACCTGAGAAGGGTAGCACGATGTGTGGGAAAGAA
TCTGATGATGGATGTGCAGATGGTGAAATTGCAACTGAAAGGGAAAGAGGAGTTTTTAACTATGGAGTCCAGCAGCGCAAGAGGATGCTTCGGCCTAGGG
GCAGCCCGCAAGTGGCAAATTGTGAACCCTGTTTTAGGTCCCATACTCAGGACTCTGAGGGATGTCAAGGCAAATCTGAGGTATCCTCTGTCATTTATAA
AGTTAGTGAATGCATGCAAGAGCTGATAAAGTTATGGAAGGAGTATGAAGCATCTCAATCTGATAAAAATAGTGAAAGCAGCCATAAGGGCCCCACTCTT
GAAATTCGAATACCAGCAGAACATATTACTGCTACAAATCGCCAAGTAAGAGGTGGACAATTATGGGGGACAGATATATACACAAATGACTCTGATCTTG
TTGCTGTTCTCATGCATACAGGCTACTTCCGTCCCACTGCTTCTCCTCCTCCACCTGCCATCCAAGACTTATGTGCTACTATCAGAGTGTTGCCTCCACA
AGATAGCTACATTTCTATGCTGAGAAATAATGTTCGTTCACGTGCCTGGGGAGCTGGAATTGGTTGTAGCTACCGTGTTGAGCGTTGCTGCATCATGAAG
AAAGGAGGTGGAACCATTGATCTTGAGCCCTGTCTTACACATACATCAGCAGTGGAACCTACTCTTGCTCCTGTAGCTGTTGAACGGACAATGACTACCC
GTGCTGCAGCTTCGAATGCATTGCGGCAACAGAGATTTGTACGTGAAGTTACAATACAGTACAACCTTTGCAATGAGCCCTGGATAAAATACAGCATTAG
TATTATTGCTGACAAGGGTCTGAAAAAGCCTCTCTATACTTCTGCACGTTTGAAAAAGGGAGAAGTTCTATATTTAGAAACACATTCATGCAGGTACGAG
CTCTGTTTTACAGGAGAGAAAATGGTGAAAGTGATGCAGGCTTCTCAGGTGCATGAAGAGACAAATAAGATCCATAATCACCACCCACATTCCTCAAACG
GTGAGAAGCACGACTTTGATAATGTTCTTATTGATGTATTCCGGTGGTCTCGCTGTAAGAAACCACTACCGCAGAAGGTCATGCAGTCAGTTGGGATCCC
ATTGCCCCTGGAACATGTTGAGGTATTGGAGGAGAATCTTGACTGGGAGGATGTGCAATGGTCACAAACTGGTGTTTGGATAGATGGAAAAGAATTCACA
CTTGCTAGGGTGCGCTTTTTATCTCCAAGTTAG
AA sequence
>Potri.018G145560.1 pacid=42800964 polypeptide=Potri.018G145560.1.p locus=Potri.018G145560 ID=Potri.018G145560.1.v4.1 annot-version=v4.1
MSGAPVKRSHEEGSHSSSLKFPPHEDTGSYPKLTSGVSNEFHLPYEMGPDARVAKIPRTESRDVDRRSPLHSMYRIPPSSNESHMDSHLNVAPERRPESR
DSKDCRDYRIENREPRTDAREMYGEAKRDSQSVKNEKDVRFDSRGDDNKEVKHDREARIEPKNDMKIEKDGFGPASSQVNWKEPKEYHRGKRCLESAGVH
VDPWHISRGNSQGPVEIEKEVVSIEERDHAKVHEAVGENKVELKGDDRFKDKDRKRKDLKLREWGDRDKERSDRRGSMQVGNSIAEGKELVKEEREGERW
EWERKDLSKDRERLKEREKDHMKIESGTGAEKEGLHNEKESLDGSVRISEQENPALEPKKQKDFDNWKNVDKEAKDKKKEREAGIEGDRPEKGSTMCGKE
SDDGCADGEIATERERGVFNYGVQQRKRMLRPRGSPQVANCEPCFRSHTQDSEGCQGKSEVSSVIYKVSECMQELIKLWKEYEASQSDKNSESSHKGPTL
EIRIPAEHITATNRQVRGGQLWGTDIYTNDSDLVAVLMHTGYFRPTASPPPPAIQDLCATIRVLPPQDSYISMLRNNVRSRAWGAGIGCSYRVERCCIMK
KGGGTIDLEPCLTHTSAVEPTLAPVAVERTMTTRAAASNALRQQRFVREVTIQYNLCNEPWIKYSISIIADKGLKKPLYTSARLKKGEVLYLETHSCRYE
LCFTGEKMVKVMQASQVHEETNKIHNHHPHSSNGEKHDFDNVLIDVFRWSRCKKPLPQKVMQSVGIPLPLEHVEVLEENLDWEDVQWSQTGVWIDGKEFT
LARVRFLSPS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G08450 unknown protein Potri.018G145560
[exp]
0 1
AT4G10600 RING/FYVE/PHD zinc finger supe... Potri.001G448900
[exp]
2.44 0.8596
AT5G55660 DEK domain-containing chromati... Potri.001G367400
[exp]
4.58 0.8708
AT1G68720 ATTADA, TADA ARABIDOPSIS THALIANA TRNA ADEN... Potri.008G111100
[exp]
5.47 0.8337
AT5G08450 unknown protein Potri.004G135800
[exp]
6.48 0.8518
AT3G49601 unknown protein Potri.006G233000
[exp]
7.48 0.8476
AT3G16620 ATTOC120 ARABIDOPSIS THALIANA TRANSLOCO... Potri.009G131200
[exp]
10.00 0.8365
AT5G09880 Splicing factor, CC1-like (.1) Potri.005G148100
[exp]
11.22 0.8134
AT3G24490 Trihelix Alcohol dehydrogenase transcri... Potri.018G075500
[exp]
11.61 0.8082
AT4G13110 BSD domain-containing protein ... Potri.008G199100
[exp]
17.32 0.7581
AT1G80930 MIF4G domain-containing protei... Potri.016G121100
[exp]
18.33 0.8101

Potri.018G145560 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.