Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10780 141 / 1e-35 LRR and NB-ARC domains-containing disease resistance protein (.1) AT1G61180 136 / 4e-34 LRR and NB-ARC domains-containing disease resistance protein (.1.2) AT4G27190 135 / 9e-34 NB-ARC domain-containing disease resistance protein (.1) AT1G52660 130 / 1e-33 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G61190 134 / 3e-33 LRR and NB-ARC domains-containing disease resistance protein (.1) AT1G61310 134 / 3e-33 LRR and NB-ARC domains-containing disease resistance protein (.1) AT5G43740 134 / 4e-33 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT5G63020 133 / 4e-33 Disease resistance protein (CC-NBS-LRR class) family (.1) AT4G27220 132 / 1e-32 NB-ARC domain-containing disease resistance protein (.1) AT5G47250 131 / 2e-32 LRR and NB-ARC domains-containing disease resistance protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T045000 [exp] 860 / 0 AT4G27220 322 / 1e-94 NB-ARC domain-containing disease resistance protein (.1) Potri.018G145582 [exp] 552 / 0 AT4G27220 277 / 2e-80 NB-ARC domain-containing disease resistance protein (.1) Potri.018G136700 [exp] 551 / 0 AT4G27190 323 / 4e-94 NB-ARC domain-containing disease resistance protein (.1) Potri.018G145572 [exp] 546 / 0 AT4G27220 279 / 4e-80 NB-ARC domain-containing disease resistance protein (.1) Potri.018G135600 [exp] 537 / 0 AT4G27220 338 / 7e-100 NB-ARC domain-containing disease resistance protein (.1) Potri.018G145578 [exp] 487 / 2e-163 AT4G27220 311 / 3e-91 NB-ARC domain-containing disease resistance protein (.1) Potri.018G137900 [exp] 407 / 1e-131 AT4G27220 354 / 4e-106 NB-ARC domain-containing disease resistance protein (.1) Potri.019G013140 [exp] 392 / 5e-126 AT4G27220 294 / 1e-84 NB-ARC domain-containing disease resistance protein (.1) Potri.019G009198 [exp] 387 / 5e-121 AT4G27220 295 / 2e-83 NB-ARC domain-containing disease resistance protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018937 [exp] 99 / 1e-21 AT3G07040 587 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10028639 [exp] 98 / 2e-21 AT3G07040 579 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10020016 [exp] 96 / 1e-20 AT3G07040 563 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10002736 [exp] 94 / 3e-20 AT3G14470 317 / 1e-98 NB-ARC domain-containing disease resistance protein (.1) Lus10039540 [exp] 94 / 7e-20 AT3G14470 727 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10039509 [exp] 94 / 7e-20 AT3G14460 613 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10002945 [exp] 92 / 3e-19 AT3G07040 580 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10014922 [exp] 91 / 6e-19 AT3G07040 523 / 1e-171 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10024173 [exp] 87 / 1e-17 AT3G14460 681 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10016316 [exp] 87 / 1e-17 AT3G14470 494 / 6e-156 NB-ARC domain-containing disease resistance protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF05729 [poplar] [flax] NACHT NACHT domain
Representative CDS sequence Show only first row Show all	>Potri.018G145568.1 pacid=42801746 polypeptide=Potri.018G145568.1.p locus=Potri.018G145568 ID=Potri.018G145568.1.v4.1 annot-version=v4.1 ATGGTTCTGCCAAAGGGTCCATTTTGGGAGTATGTTAAGGAGACTGGTGAAAGTAGGCAGTGTACGTTTTGTGGGCATCCATTCTCCAATCAAACTCCGA TTACCAGGTTCAAGCTTCATTGGTCAGGAGTTCAAAGGCGTGGAACTACAATTTGTGACAAAGTGCCAGAACCTGTTCGAGACGCAGCTTTCACTGCTGT TGATGGTCCTCCAGAAAAGAAACTTACAACCACAGCTACGTCAAGCAATGATGGGGCACACAATACAATTTCAACTTCTTTGCTAGAACAAAACATTCAA GTTGGAAATGTAGTGACCGATGTAGAAACGGAACCAGAATTGTATTTTCCCTCACCTGGAGAACAAGAATTCGTGCAGACGAACATGGGAAATTTTCAGC TTGATAGGGTTTCTAGTTTTCCTGGAGACCTGATCCCTGGTGAACAAGTGGAGCAAGAGCGTGGAAGAAATGCTCAGGACAACTTACCTTTGTCCGTGGA GGATTATAGGATTGAGAGCACGATCGAGGAATTGAACCAGCTTGTTGTGAGAGGTGGCTCTCCTGAGAGGCTTACAGTTAATGAAGATGAGCCTAGAGAA GATTTGTCCCAACCAACTGATCCACTGTGTTTTGGCCTTGAAAGGCATTATGATCAACCATCTTCTTCCTCAGTCAACAATGATGTCATGATGATTGATG TGGAGAATATGATTGGAGAACATTTGCAGCCTGTTGTGAGACATAGCTCTCGTGAAGGTCTTCAACCTATTGGCGATGAGAGCGGACGAGATGTGTTTCT AACTGAAGAACTAATAGGTGGAGAGTTTGAAAATAATAAGAATGCTATCTGGTCGTGGATAATGAATGATATTGAAGCCTCAACAAGTATTGGCATTTAC GGGATGGGGGGTGTGGGCAAAACAACATTGCTCACACATATCTACAATCAGCTTCTACAAGAACCTGGCACTTTTCCCCATGTTCACTGGATCACGGTAT CGCAGGATTTTAGTGTTTCTAAATTGCAGAATCTTATTGCAGAAGACATTCATTTAGATCTTTCAAATGAAGATAACGAGAGGAAAAGGGCTGCAAAACT GTCAAAAGCATTAATTGAGAAACAACGGTGGGTTCTCATCTTAGATGATTTGTGGGACTGTTTTGATTATAATAAGGTGGGAATTCCTATCAGAGTGAAG GGATGCAAGCTAATTCTTACAACTCGATCATTTGGAGTTTGTCAGCGGATGTTCTGCCAGAAGACAATCAAAGTGGAGCCTCTTTCAATGGAAGAAGCTT GGGCTCTGTTCATGAAGGTGCTTGGATGTATTCCTCCAGAAGTGGAAGAAATTGCAAGATCTATTGCAAGTGAATGTGCTGGTTTGCCTCTTGGAATTAT AACAATGGCCGGAACCATGAGGGGAGTGGATGACAGATGTGAGTGGAGGAATGCTTAG
AA sequence Show only first row Show all	>Potri.018G145568.1 pacid=42801746 polypeptide=Potri.018G145568.1.p locus=Potri.018G145568 ID=Potri.018G145568.1.v4.1 annot-version=v4.1 MVLPKGPFWEYVKETGESRQCTFCGHPFSNQTPITRFKLHWSGVQRRGTTICDKVPEPVRDAAFTAVDGPPEKKLTTTATSSNDGAHNTISTSLLEQNIQ VGNVVTDVETEPELYFPSPGEQEFVQTNMGNFQLDRVSSFPGDLIPGEQVEQERGRNAQDNLPLSVEDYRIESTIEELNQLVVRGGSPERLTVNEDEPRE DLSQPTDPLCFGLERHYDQPSSSSVNNDVMMIDVENMIGEHLQPVVRHSSREGLQPIGDESGRDVFLTEELIGGEFENNKNAIWSWIMNDIEASTSIGIY GMGGVGKTTLLTHIYNQLLQEPGTFPHVHWITVSQDFSVSKLQNLIAEDIHLDLSNEDNERKRAAKLSKALIEKQRWVLILDDLWDCFDYNKVGIPIRVK GCKLILTTRSFGVCQRMFCQKTIKVEPLSMEEAWALFMKVLGCIPPEVEEIARSIASECAGLPLGIITMAGTMRGVDDRCEWRNA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G10780			LRR and NB-ARC domains-contain...		Potri.018G145568 [exp]	0	1
AT1G78060			Glycosyl hydrolase family prot...		Potri.005G168400 [exp]	1.73	0.8797
AT1G25420			Regulator of Vps4 activity in ...		Potri.010G124100 [exp]	2.23	0.8726
AT1G70520		ASG6, CRK2	ALTERED SEED GERMINATION 6, cy...		Potri.001G276600 [exp]	2.44	0.8776
AT3G14470			NB-ARC domain-containing disea...		Potri.012G123400 [exp]	3.74	0.8626
AT4G27220			NB-ARC domain-containing disea...		Potri.018G136500 [exp]	3.87	0.8756
AT4G27220			NB-ARC domain-containing disea...		Potri.018G135600 [exp]	4.00	0.8753
AT4G27220			NB-ARC domain-containing disea...		Potri.019G014312 [exp]	7.34	0.8499
AT3G14470			NB-ARC domain-containing disea...		Potri.004G170700 [exp]	9.48	0.8453
AT1G79740			hAT transposon superfamily (.1...		Potri.018G135702 [exp]	9.94	0.8451
AT3G59140		ATMRP14, ABCC10	ATP-binding cassette C10, mult...		Potri.016G122901 [exp]	10.00	0.8268

Compare expression of checked genes

Potri.018G145568 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.