Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G44480 81 / 2e-16 COG1, RPP10, RPP1 recognition of peronospora parasitica 1, Disease resistance protein (TIR-NBS-LRR class) family (.1) AT1G69550 76 / 9e-15 disease resistance protein (TIR-NBS-LRR class) (.1) AT3G44630 72 / 1e-13 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2), Disease resistance protein (TIR-NBS-LRR class) family (.3) AT3G25510 71 / 3e-13 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G44510 69 / 1e-12 TAO1 target of AVRB operation1 (.1) AT4G19050 68 / 3e-12 NB-ARC domain-containing disease resistance protein (.1) AT4G14370 68 / 4e-12 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G16860 67 / 6e-12 RPP5, RPP4 recognition of peronospora parasitica 4, Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G17680 65 / 4e-11 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT4G08450 65 / 4e-11 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G135800 [exp] 604 / 0 AT3G14470 403 / 3e-122 NB-ARC domain-containing disease resistance protein (.1) Potri.018G135700 [exp] 563 / 0 AT3G14470 380 / 2e-114 NB-ARC domain-containing disease resistance protein (.1) Potri.014G012000 [exp] 473 / 5e-158 AT3G14470 367 / 7e-109 NB-ARC domain-containing disease resistance protein (.1) Potri.014G003832 [exp] 456 / 1e-150 AT3G14470 370 / 1e-109 NB-ARC domain-containing disease resistance protein (.1) Potri.014G007600 [exp] 453 / 1e-150 AT3G14470 381 / 3e-114 NB-ARC domain-containing disease resistance protein (.1) Potri.014G005600 [exp] 449 / 1e-148 AT3G14470 362 / 3e-107 NB-ARC domain-containing disease resistance protein (.1) Potri.014G003600 [exp] 447 / 1e-146 AT3G14470 388 / 2e-115 NB-ARC domain-containing disease resistance protein (.1) Potri.004G169800 [exp] 440 / 2e-145 AT3G14470 393 / 1e-118 NB-ARC domain-containing disease resistance protein (.1) Potri.004G170400 [exp] 438 / 2e-144 AT3G14470 401 / 3e-121 NB-ARC domain-containing disease resistance protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001038 [exp] 89 / 5e-20 AT1G69550 112 / 2e-27 disease resistance protein (TIR-NBS-LRR class) (.1) Lus10016316 [exp] 89 / 7e-19 AT3G14470 494 / 6e-156 NB-ARC domain-containing disease resistance protein (.1) Lus10039509 [exp] 87 / 3e-18 AT3G14460 613 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10029628 [exp] 86 / 7e-18 AT1G27180 462 / 1e-138 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10006793 [exp] 84 / 2e-17 AT3G14460 127 / 4e-30 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10002737 [exp] 83 / 3e-17 AT3G14460 167 / 7e-44 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10001375 [exp] 76 / 1e-14 AT5G36930 464 / 3e-141 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10014207 [exp] 76 / 2e-14 AT5G36930 446 / 5e-135 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10004257 [exp] 72 / 3e-13 AT5G36930 446 / 7e-136 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10005373 [exp] 71 / 3e-13 AT5G36930 404 / 8e-121 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.018G145580.1 pacid=42801939 polypeptide=Potri.018G145580.1.p locus=Potri.018G145580 ID=Potri.018G145580.1.v4.1 annot-version=v4.1 ATGGCACCGCAGAGAAATGGTTGGCTCGGTGCCAAAGTCTCTGCGGATAAAGATGAAAGCTGCTACCAAGAACTTCGATGCGGAAAACAAAGTCGGCGAG GGTGGTTTCAGTTCTGTTTACAAGGATGTGAGGAACTGAGATATTTGTCTGGTGAATTTCATGGCTTCACGTCTCTTCAGTTGTTGAGCATAGAGGGTTG TCCAAAGCTGACATCAATTCCAAGCGTACAACACTGCACAACTCTGGTGAAATTGGATATAGATGGCTGCCTTGAGTTGATCTCAATTCCTGGTGATTTT CAAGAATTGAAATATTCTTTGAAGATATTGTCGATGTATAATTTGAAATTGGAAGCTCTTCCGAGCGGACTACAATGTTGCGCATCTCTAGAGGAATTGT ACATATGGGATTGCAGGGAGCTTATCCATATCAGTGATTTACAAGAATTGTCTTCGCTTCGAAGATTAGAGATTAGAGGTTGTGATAAGATCAGCAGTAT TGAATGGCATGGTTTACGACAATTACCTTCTCTTGTTTATTTAGAAATCAGTGGGTGTCGGAGTTTGAGTCATTTCCCAGACGATGATTGCTTAGGCGGC CTCACCCAACTGAAGGAATTGGCCATTGGTGGTTTCTCAGAGGAGCTGGAGGCTTTTCCTGCAGGAGTTTTAAACTCATTCCAACACCTCAACTTGAGTG GATCCCTTGAAAGACTGGAGATATGTGGATGGGATAAACTGAAGAGCGTACAGCATCAACTCCAACACCTCACTGCCCTTGAGAGATTGGAAATATGTGA TTTCAGGGGAGAGGGATTTGAGGAAGCTTTGCCAGATTGGTTGGCCAACCTTTCTTCTCTTCGATATCTTGGGATTGATAATTGTAAGAATCTTAAGTAT CTGCCAAGCTTAACAGCCATTCAACGCCTCTCCAAACTGAAGGGATTGCGGATTTTAGGGGGATGTCCACATCTCTCAGAAAATTGTAGAAAGGAGAACG GCTCTGAGTGGCCCAAGATTTCTCATATCCCAACAATCGATATAGTATAG
AA sequence Show only first row Show all	>Potri.018G145580.1 pacid=42801939 polypeptide=Potri.018G145580.1.p locus=Potri.018G145580 ID=Potri.018G145580.1.v4.1 annot-version=v4.1 MAPQRNGWLGAKVSADKDESCYQELRCGKQSRRGWFQFCLQGCEELRYLSGEFHGFTSLQLLSIEGCPKLTSIPSVQHCTTLVKLDIDGCLELISIPGDF QELKYSLKILSMYNLKLEALPSGLQCCASLEELYIWDCRELIHISDLQELSSLRRLEIRGCDKISSIEWHGLRQLPSLVYLEISGCRSLSHFPDDDCLGG LTQLKELAIGGFSEELEAFPAGVLNSFQHLNLSGSLERLEICGWDKLKSVQHQLQHLTALERLEICDFRGEGFEEALPDWLANLSSLRYLGIDNCKNLKY LPSLTAIQRLSKLKGLRILGGCPHLSENCRKENGSEWPKISHIPTIDIV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G44480		COG1, RPP10, RP...	recognition of peronospora par...		Potri.018G145580 [exp]	0	1
AT2G16060		ATGLB1, ARATHGL...	CLASS I HEMOGLOBIN, hemoglobin...		Potri.009G110901 [exp]	2.00	0.8869
AT4G12390		PME1	pectin methylesterase inhibito...		Potri.003G113700 [exp]	3.46	0.8483
AT3G14470			NB-ARC domain-containing disea...		Potri.014G005600 [exp]	6.32	0.8478
AT4G27220			NB-ARC domain-containing disea...		Potri.018G145578 [exp]	7.93	0.8265
AT1G22220		AUF2	auxin up-regulated f-box prote...		Potri.001G021600 [exp]	12.96	0.7314
AT3G14470			NB-ARC domain-containing disea...		Potri.014G003600 [exp]	14.96	0.8264
AT3G14470			NB-ARC domain-containing disea...		Potri.012G121750 [exp]	15.55	0.7858
AT4G18820			AAA-type ATPase family protein...		Potri.011G071300 [exp]	15.74	0.7744
AT5G67620			unknown protein		Potri.007G005600 [exp]	17.00	0.7936
AT3G61220		SDR1	short-chain dehydrogenase/redu...		Potri.002G156701 [exp]	17.94	0.7588

Compare expression of checked genes

Potri.018G145580 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.