Plant FIBer expression Database

Potri.018G145600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.018G138206
[exp]
1148 / 0 ND /
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10029579
[exp]
676 / 0 ND /
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0061 PLP_aminotran PF00155 Aminotran_1_2 Aminotransferase class I and II
CL0061 PF03711 OKR_DC_1_C Orn/Lys/Arg decarboxylase, C-terminal domain
Representative CDS sequence
>Potri.018G145600.1 pacid=42800705 polypeptide=Potri.018G145600.1.p locus=Potri.018G145600 ID=Potri.018G145600.1.v4.1 annot-version=v4.1
ATGTCTTGCTCCACTCTTCTGGACCAAAGTCTTCAGTTGGGTTTTGCCAAGAAATGGACTTCTGTATCTTTGAGACCAAGAACAAGCACTTGTTGCACTT
CTCAGGAAAGAAGCACCTTGGAGCCAAAAAAGAAAGGAGATAGAGAAAGCAGAGGAGAGAAAAACAGGTCAGTCACCGAGGATAAATCCCTTATTTCCAG
ATCTCGTATAAGTCAGCAAGACAGCCTTCCTCCATTGGTTGGTGCTTTGAAAGCTTCAGCTGAAAAAAATGCAGCCAGCTTTCACTTCCCTGGGCATAAT
AGAGGGCGTGCTGCACCGTCTTCATTAACACAGCTTATTGGGTTGAGACCATTTATTCATGATTTACCTGAGCTTCCAGAGCTTGACAACCTCTTTTCAC
CAGAGGGGCCCATTTTAGAGGCACAAATGCAAGCTGCCAAACTATTTGGATCTTCAGAAACATGGTTTCTTGTTGGAGGTACCACTTGTGGAATCCAAGC
TGCAATAATGGCAACTTGTTCACCTGGAGAACATATTGTTCTCCCTCGCAATTCACATATATCAGCCATATCTGCTATGGTATTATCTGGAGCAATACCG
AAGTACATAATGCCTGGGTATGATTGTAAATGGGATATTGCTGGTGGTGTCACTCCCTTACAGGTGGGGAAAGCTATCAAAGAGTTGGAGATGGATGGTA
AAAAACCAGCTGCAGTTTTTATCACATCACCTACTTATCATGGTATATGCAGCAACTTGAGTGAGATTTCCCAACTTTGTCATGCTTATGGAATTCCTGT
GATTGTCGACGAGGCTCATGGAGCACACCTAGGATTCCATCCCCAGATGCCTCATTCAGCTCTTAAGCAGGGTGCTGATTTGGTGGTACAATCCACTCAC
AAAGTTCTGTGTTCCCTTACACAGTCATCAATGTTGCACATGTCTGGGAATATTGTAGACAGAGATAGAATCTGTCGGTGCCTTCAAACCCTTCAAAGCA
CAAGCCCCAGTTATCTGCTTTTAGCATCATTAGATGCTGCTAGAGCTCAACTTGCTGAAAACCCAGGAACAGTTTTCAACAAAGCTTTGGAGTTGGCAAT
TGAAGCAAGCACTCTCATTAAAAAGATTCCTGGTATTAGCGTGCTTGACTTGGCGAGCTTCAATGAATTTCCTGCCATTGATCCCTTGCGCCTCACTCTT
GGTTTTTGGTCACTTGGTTTATCTGGCTATGAAGCAGATGATATTTTAGATAGGGACCATGGAGTCATCTCTGAGCTTGTTGGGACCCAATCTATTACAT
TTGCAATAAACCTTGGAACTTGCAGGGAACATAATCAAAGGTTAGTATCAGGTTTAAAGAAACTACCAACATCTTCCTTACATTCCAAAACCACGGAAAA
GAGGGTGGAGAGCAGAGAGCATGCACCCTTCAATGATATTTGTATCAGTTTGAATCCAAGAGATGCCTTTTTTGCAAATAAAAGGAGTGTGAGTGTCAGA
GAGAGCCTTGGCAAGGTCTGTGGTGAGCTTATATGTCCATACCCACCAGGGATCCCTGTAATGATTCCTGGTGAGATTATTACAGAAAGGGCTTTGAATT
ATCTGCTGGATGTTAGAAGGAAAGGTGCTGTTGTTACTGGAGCTTCCGATTCTCATCTCTCTTCCATAGTTATCTGTGATGTGTGA
AA sequence
>Potri.018G145600.1 pacid=42800705 polypeptide=Potri.018G145600.1.p locus=Potri.018G145600 ID=Potri.018G145600.1.v4.1 annot-version=v4.1
MSCSTLLDQSLQLGFAKKWTSVSLRPRTSTCCTSQERSTLEPKKKGDRESRGEKNRSVTEDKSLISRSRISQQDSLPPLVGALKASAEKNAASFHFPGHN
RGRAAPSSLTQLIGLRPFIHDLPELPELDNLFSPEGPILEAQMQAAKLFGSSETWFLVGGTTCGIQAAIMATCSPGEHIVLPRNSHISAISAMVLSGAIP
KYIMPGYDCKWDIAGGVTPLQVGKAIKELEMDGKKPAAVFITSPTYHGICSNLSEISQLCHAYGIPVIVDEAHGAHLGFHPQMPHSALKQGADLVVQSTH
KVLCSLTQSSMLHMSGNIVDRDRICRCLQTLQSTSPSYLLLASLDAARAQLAENPGTVFNKALELAIEASTLIKKIPGISVLDLASFNEFPAIDPLRLTL
GFWSLGLSGYEADDILDRDHGVISELVGTQSITFAINLGTCREHNQRLVSGLKKLPTSSLHSKTTEKRVESREHAPFNDICISLNPRDAFFANKRSVSVR
ESLGKVCGELICPYPPGIPVMIPGEIITERALNYLLDVRRKGAVVTGASDSHLSSIVICDV

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.018G145600
[exp]
0 1
Potri.018G138206
[exp]
1.00 0.9632
AT4G31040 CemA-like proton extrusion pro... Potri.006G080100
[exp]
3.46 0.9192
AT3G42630 Pentatricopeptide repeat (PPR)... Potri.018G146900
[exp]
4.24 0.9214
AT1G17720 ATBBETA, ATB BE... Protein phosphatase 2A, regula... Potri.015G079300
[exp]
5.38 0.8850
AT2G47940 EMB3117, DEGP2 EMBRYO DEFECTIVE 3117, DEGP pr... Potri.014G135200
[exp]
5.65 0.9014 Pt-DEGP2.2
AT5G55580 Mitochondrial transcription te... Potri.001G361800
[exp]
5.83 0.9394
AT1G28560 SRD2 SHOOT REDIFFERENTIATION DEFECT... Potri.015G143000
[exp]
8.12 0.8794
AT1G06950 ATTIC110, TIC11... ARABIDOPSIS THALIANA TRANSLOCO... Potri.013G154300
[exp]
8.66 0.8928
AT4G30720 PDE327 PIGMENT DEFECTIVE 327, FAD/NAD... Potri.018G103700
[exp]
9.27 0.8693
AT5G62620 Galactosyltransferase family p... Potri.012G072400
[exp]
9.38 0.8985

Potri.018G145600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.