Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-ARA1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16130 1434 / 0 ATISA1, ARA1 arabinose kinase (.1) AT3G42850 1392 / 0 Mevalonate/galactokinase family protein (.1) AT3G06580 63 / 8e-10 GAL1, GALK GALACTOSE KINASE 1, Mevalonate/galactokinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G003100 [exp] 1462 / 0 AT4G16130 1660 / 0.0 arabinose kinase (.1) Potri.018G138204 [exp] 1348 / 0 AT4G16130 1003 / 0.0 arabinose kinase (.1) Potri.018G138202 [exp] 278 / 1e-87 AT4G16130 179 / 2e-52 arabinose kinase (.1) Potri.010G148100 [exp] 81 / 1e-15 AT3G06580 792 / 0.0 GALACTOSE KINASE 1, Mevalonate/galactokinase family protein (.1) Potri.008G102800 [exp] 79 / 7e-15 AT3G06580 793 / 0.0 GALACTOSE KINASE 1, Mevalonate/galactokinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026983 [exp] 811 / 0 AT4G16130 1013 / 0.0 arabinose kinase (.1) Lus10020178 [exp] 690 / 0 AT4G16130 625 / 0.0 arabinose kinase (.1) Lus10016321 [exp] 69 / 1e-12 AT3G06580 338 / 8e-115 GALACTOSE KINASE 1, Mevalonate/galactokinase family protein (.1) Lus10037789 [exp] 72 / 2e-12 AT3G06580 765 / 0.0 GALACTOSE KINASE 1, Mevalonate/galactokinase family protein (.1) Lus10017072 [exp] 69 / 1e-11 AT3G06580 728 / 0.0 GALACTOSE KINASE 1, Mevalonate/galactokinase family protein (.1) Lus10002740 [exp] 67 / 6e-11 AT3G06580 728 / 0.0 GALACTOSE KINASE 1, Mevalonate/galactokinase family protein (.1) Lus10023094 [exp] 60 / 8e-09 AT3G06580 635 / 0.0 GALACTOSE KINASE 1, Mevalonate/galactokinase family protein (.1) Lus10016320 [exp] 43 / 0.001 AT3G06580 496 / 6e-176 GALACTOSE KINASE 1, Mevalonate/galactokinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0329 [poplar] [flax] S5 PF00288 [poplar] [flax] GHMP_kinases_N GHMP kinases N terminal domain CL0677 [poplar] [flax] GHMP_C PF08544 [poplar] [flax] GHMP_kinases_C GHMP kinases C terminal CL0329 [poplar] [flax] S5 PF10509 [poplar] [flax] GalKase_gal_bdg Galactokinase galactose-binding signature CL0113 [poplar] [flax] GT-B PF13528 [poplar] [flax] Glyco_trans_1_3 Glycosyl transferase family 1
Representative CDS sequence Show only first row Show all	>Potri.018G145700.1 pacid=42801107 polypeptide=Potri.018G145700.1.p locus=Potri.018G145700 ID=Potri.018G145700.1.v4.1 annot-version=v4.1 ATGGAGGGAATAGTATCGTCAAAGCAGCAGCAGCCTTTGGTTTTTGCTTACTATGTTACTGGTCATGGATTTGGTCATGCCACTCGTGTTGTTGAGGTGG TTCGTCATTTAATTCTAGAGGGACATATTGTTCATGTGGTTACAGCTGCACCAGACTTTGTTTACACTTCTGCAATACAGTCGCCGAGACTGTTCCTTCG AAAGGAGCTGCTGGATTGTGGAGCTGTTCAATGTGATGCCTTGACAGTTGATCGTATTGCCTCCTTGGAAAAGTATTCTGAGACAGCAGTAATCCCTCGA GAGACTATCTTAGCAACAGAAGTGAAGTGGTTGCAGTCTATTAAAGCTGACCTAGTGGTTTCAGATGTTGTTCCTGTTGCCTGCCGAGCAGCTGCAGATG CCGGCATCCGTTCTGTTTGTTGCACCAACTTCAGTTGGGACTTCATCTACGCAGAATATGTGGTGGATGCTGGATCACAACATCGCTCGATTGTTCTGCA GATTGCCGAGGACTATTCTCACTGTGAATTTCTAATACGTCTACCAGGATATTGTCCAATGCCTGCTTTTCGTGATGTTCTTGATATACCCCTTGTTGTG AGGGGACTGCACAAATCCAGAGCAGAGGTCAGGAAGGAGCTCGGAGTTGAAGAGGATGTGAAGCTAGTAATTTTCAATTTTGGCGGACAGCCTGCTGGGT GGAAGTTACAGGAGGAGTTTCTACCTCCTGGTTGGAAGTGTGTGGTATGTGGGGGTTCTGACAAGGAAGAATATCCCCCGAATTTCATCAAGCTTCCGAA AGATGCTTATACGCCAGATGTGATAGCAGCTTCAGACTGCATGCTTGGGAAAATTGGATATGGCACATTTAGTGAAGCTATGGCATACAAGTTGCCGTTT GTGTTTGTACGAAGAGATTACTTTAATGAAGAGCTGTTTTTGAGAAACATGCTTGAGCATTATCATGGAGGTGTTGAGATGATTAGGAGAGATTTGCTGA CAGGATGCTGGCAACCCTACCTTGAGCGTGCCATTAGATTGAAACCATGCTATGATGGAGGTGTCAATGGCGGTGAGGTTGCTGCTCGCATACTTCAGGA TACAGCTCTTGGAAAAAATCATGCTTCTGATAAGCCTTGTGGAGCAAGAAGATTGCGAGATGCGATTGTGCTTGGATATCAACTACAAAGAGTTAACAAC AGAATTATAGGTATTCCAGATTGGTACAATCTTGAAGAAAACAAGCTTGTAGGTCGTTCATCAGAAGGCTCCCAATTCTTGAGAGAGGTAGAAGACTTTG AGATTCTTCACGGTGACCCTCAAGGTCTTCCCGATACAATGGCGTTCTTAAAGAGCTTGGCAGACATAGGTGCAGGACATGACTCAAAAAAGGATACCGA CGATGAAGTGCGGGAGGATTTGGCTGCTGCTGGATTGTTCAACTGGGAGGAGGAAATATTTGTAGCAAGAGCACCAGGGAGACTAGATGTCTTGGGTGGT ATTGCTGACTATTCAGGAAGTCTAGTTTTGCAGATGCCTATCAGAGAAGCTTGTCATGTTGCTGTACAAAAGAATCATCCAAGTAAACAGAAGCTGTGGA AACATGCACAGGCTAGACATCATGCTGATCACGAGAAACTTGCACCCATTCTAGAAATTGTGTCATTGGGCTCAGAATTGAATAATCGTGGACCAACATT TGACATGGATCTATCTGATTTTAAAGATGATGAGAAGCCAATATCTTATGAGGCAGCAAGGAAGTATTTTGCCAAAGATCCATCTCAAAAGTGGGCAGCA TATGTTGCTGGGACAATTGTGGTACTAATGACAGAGTTGGGTGTTTGTTTTGAGAACAGTATCAGCATACTGGTTTCTTCAGGAGTCCCAGAAGGCAAAG GCGTTTCTTCATCTGCAGCATTGGAGGTTGCCACCATGTCTGCTATTGCTGCTGCTCATGGTTTAAACATTCCCCCGCGAGATCTTGCTTTGCTTTGCCA AAAGGTGGAGAATCATGTTGTTGGAGCCCCGTGTGGGGTGATGGATCAAATGACCTCTGCGTGTGGGGAAGCAAACAAACTTCTAGCGATGGTATGCCAG CCTGCTGAGGTACTAGGAGTAGTTGATATTCCTTCCCATGTACGATTTTGGGGCATAGATTCAGGATTAAGACACAGTGTTGGTGGTTCAGATTATGGAT CTGTGAGGATTGGAACTTACATGGGCCGAAAGATAATAAAGTCTACAGCTGCAGGATTGTCGAAGGGAAACAAAAAAGACGACATGGACAAGGATGGCAT CGAACTGCTTGATAATGAGGCTTCATTAGATTACTTATGCAATCTCCCACCTCATAGGTACGAAGGTGTGTATGTTGATAAGCTTCCAGAGACTGTTACA GGTGAAGAATTCATAAAGAAATATGTTAATCATGAGGATTCAGTCACAACAATAGATCCCAAACATATTTATGCAGTTAAAGCACCAACCAGGCATCCTG TTTATGAGAACTTCCGAGTCGAGGCTTTCAAAGCATTATTAACTGCTACTACTTCGGATGGACAACTTTCTGCTCTTGGGGAACTTATGTATCAGTGTCA TTACAGCTATGGTGCATGTGGACTTGGCTCTGATGGGACAGACAGGCTGGTAGAATTGGTACAAGAAATGCAGCACAGCAAGGCTTCCAAATCTGAAAAT GGGACTCTGTATGGAGCGAAGATCACCGGAGGGGGAAGCGGTGGCACAGTTTGTGTTATCGGAAAGAATTTTGTGGGAAGCAATGAGCAAATTCTTGAAA TTCAACGGAGGTACCACGTTGCCACAGGCTTTAAGCCATACGTGTTTGAGGGTTCTTCTCCAGGGGCAGGAAAGTTCGGATACCTGAAAATTCGCCGCCG CAACGCCACCGAATGA
AA sequence Show only first row Show all	>Potri.018G145700.1 pacid=42801107 polypeptide=Potri.018G145700.1.p locus=Potri.018G145700 ID=Potri.018G145700.1.v4.1 annot-version=v4.1 MEGIVSSKQQQPLVFAYYVTGHGFGHATRVVEVVRHLILEGHIVHVVTAAPDFVYTSAIQSPRLFLRKELLDCGAVQCDALTVDRIASLEKYSETAVIPR ETILATEVKWLQSIKADLVVSDVVPVACRAAADAGIRSVCCTNFSWDFIYAEYVVDAGSQHRSIVLQIAEDYSHCEFLIRLPGYCPMPAFRDVLDIPLVV RGLHKSRAEVRKELGVEEDVKLVIFNFGGQPAGWKLQEEFLPPGWKCVVCGGSDKEEYPPNFIKLPKDAYTPDVIAASDCMLGKIGYGTFSEAMAYKLPF VFVRRDYFNEELFLRNMLEHYHGGVEMIRRDLLTGCWQPYLERAIRLKPCYDGGVNGGEVAARILQDTALGKNHASDKPCGARRLRDAIVLGYQLQRVNN RIIGIPDWYNLEENKLVGRSSEGSQFLREVEDFEILHGDPQGLPDTMAFLKSLADIGAGHDSKKDTDDEVREDLAAAGLFNWEEEIFVARAPGRLDVLGG IADYSGSLVLQMPIREACHVAVQKNHPSKQKLWKHAQARHHADHEKLAPILEIVSLGSELNNRGPTFDMDLSDFKDDEKPISYEAARKYFAKDPSQKWAA YVAGTIVVLMTELGVCFENSISILVSSGVPEGKGVSSSAALEVATMSAIAAAHGLNIPPRDLALLCQKVENHVVGAPCGVMDQMTSACGEANKLLAMVCQ PAEVLGVVDIPSHVRFWGIDSGLRHSVGGSDYGSVRIGTYMGRKIIKSTAAGLSKGNKKDDMDKDGIELLDNEASLDYLCNLPPHRYEGVYVDKLPETVT GEEFIKKYVNHEDSVTTIDPKHIYAVKAPTRHPVYENFRVEAFKALLTATTSDGQLSALGELMYQCHYSYGACGLGSDGTDRLVELVQEMQHSKASKSEN GTLYGAKITGGGSGGTVCVIGKNFVGSNEQILEIQRRYHVATGFKPYVFEGSSPGAGKFGYLKIRRRNATE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G16130		ATISA1, ARA1	arabinose kinase (.1)		Potri.018G145700 [exp]	0	1	Pt-ARA1.1
AT4G16130		ATISA1, ARA1	arabinose kinase (.1)		Potri.018G138202 [exp]	1.00	0.9560
AT1G14190			Glucose-methanol-choline (GMC)...		Potri.010G168200 [exp]	1.41	0.8866
AT5G26594		ARR24	response regulator 24 (.1)		Potri.002G253000 [exp]	3.87	0.8727
AT5G49120			Protein of unknown function (D...		Potri.010G011700 [exp]	4.69	0.8489
AT2G41290		SSL2	strictosidine synthase-like 2 ...		Potri.016G037700 [exp]	4.89	0.8720
AT5G41761			unknown protein		Potri.002G167900 [exp]	4.89	0.8756
AT2G41290		SSL2	strictosidine synthase-like 2 ...		Potri.016G037800 [exp]	6.48	0.8212
AT1G15460		ATBOR4	ARABIDOPSIS THALIANA REQUIRES ...		Potri.001G174500 [exp]	6.48	0.8652
AT4G22290			Ubiquitin-specific protease fa...		Potri.002G176200 [exp]	7.48	0.8614
AT3G07960		PIP5K6	phosphatidylinositol-4-phospha...		Potri.003G196000 [exp]	9.48	0.8055

Compare expression of checked genes

Potri.018G145700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.