Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-CSARF2.3
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19220 666 / 0 ARF IAA22, ARF11, ARF19 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1) AT5G20730 635 / 0 ARF MSG1, IAA21, BIP, ARF7, IAA25, IAA23, TIR5, NPH4 MASSUGU 1, indole-3-acetic acid inducible 25, indole-3-acetic acid inducible 23, indole-3-acetic acid inducible 21, BIPOSTO, AUXIN RESPONSE FACTOR 7, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1.2.3) AT1G30330 520 / 3e-168 ARF ARF6 auxin response factor 6 (.1.2) AT5G37020 500 / 1e-162 ARF ARF8, ATARF8 auxin response factor 8 (.1.2) AT1G19850 492 / 1e-157 ARF IAA24, ARF5, MP MONOPTEROS, indole-3-acetic acid inducible 24, AUXIN RESPONSE FACTOR 5, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1) AT5G62000 381 / 1e-116 ARF ORE14, HSS, ARF1-BP, ARF2 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) AT1G59750 366 / 5e-113 ARF ARF1 auxin response factor 1 (.1.2.3.4) AT4G23980 332 / 9e-101 ARF ARF9 auxin response factor 9 (.1.2) AT5G60450 330 / 1e-98 ARF ARF4 auxin response factor 4 (.1) AT2G46530 323 / 4e-98 ARF ARF11 auxin response factor 11 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G077800 [exp] 1667 / 0 AT1G19220 664 / 0.0 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1) Potri.006G138500 [exp] 650 / 0 AT1G19220 734 / 0.0 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1) Potri.018G063000 [exp] 615 / 0 AT1G19220 735 / 0.0 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1) Potri.001G358500 [exp] 531 / 6e-173 AT1G30330 818 / 0.0 auxin response factor 6 (.1.2) Potri.004G078200 [exp] 526 / 1e-171 AT5G37020 1057 / 0.0 auxin response factor 8 (.1.2) Potri.011G091900 [exp] 526 / 5e-171 AT1G30330 830 / 0.0 auxin response factor 6 (.1.2) Potri.017G141000 [exp] 520 / 1e-169 AT5G37020 1048 / 0.0 auxin response factor 8 (.1.2) Potri.005G207700 [exp] 523 / 2e-169 AT5G37020 694 / 0.0 auxin response factor 8 (.1.2) Potri.005G236700 [exp] 520 / 9e-168 AT1G19850 1060 / 0.0 MONOPTEROS, indole-3-acetic acid inducible 24, AUXIN RESPONSE FACTOR 5, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027600 [exp] 1293 / 0 AT1G19220 670 / 0.0 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1) Lus10022943 [exp] 1163 / 0 AT1G19220 546 / 4e-177 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1) Lus10033635 [exp] 597 / 0 AT5G20730 741 / 0.0 MASSUGU 1, indole-3-acetic acid inducible 25, indole-3-acetic acid inducible 23, indole-3-acetic acid inducible 21, BIPOSTO, AUXIN RESPONSE FACTOR 7, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1.2.3) Lus10010969 [exp] 527 / 1e-172 AT5G37020 1013 / 0.0 auxin response factor 8 (.1.2) Lus10031354 [exp] 527 / 2e-172 AT5G37020 1013 / 0.0 auxin response factor 8 (.1.2) Lus10033598 [exp] 521 / 2e-170 AT5G37020 799 / 0.0 auxin response factor 8 (.1.2) Lus10033597 [exp] 523 / 4e-170 AT1G19220 842 / 0.0 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1) Lus10007386 [exp] 522 / 4e-170 AT5G37020 1021 / 0.0 auxin response factor 8 (.1.2) Lus10017641 [exp] 518 / 2e-166 AT1G30330 810 / 0.0 auxin response factor 6 (.1.2) Lus10024320 [exp] 501 / 5e-164 AT1G19850 724 / 0.0 MONOPTEROS, indole-3-acetic acid inducible 24, AUXIN RESPONSE FACTOR 5, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [poplar] [flax] Ubiquitin PF02309 [poplar] [flax] AUX_IAA AUX/IAA family CL0405 [poplar] [flax] DNA_b-psBarrel PF02362 [poplar] [flax] B3 B3 DNA binding domain CL0405 [poplar] [flax] PF06507 [poplar] [flax] Auxin_resp Auxin response factor
Representative CDS sequence Show only first row Show all	>Potri.018G145800.2 pacid=42801447 polypeptide=Potri.018G145800.2.p locus=Potri.018G145800 ID=Potri.018G145800.2.v4.1 annot-version=v4.1 ATGAAGTCACCGGCCAACGGTGCCGCCGCCGCAGTCACCAACGGTGAAGGGGTAGAGAAGAAGAGCATAAACCCTGAGTTATGGCAAGCATGTGCAGGAC CACTAGTGAACTTGCCGGCGGCCGGAACTCATGTGGTCTACTTCCCTCAAGGGCATAGTGAACAGGTTGCAGCATCTTTGAAGAAGGATGTGAATGCGCA AATTCCAAACTACCCAAATCTTCCCTCGAAGCTGCTATGTCTCCTTCACAATGTCACCTTACATGCGGACCCTGAAACAGATGAAGTTTATGTTCAGATG ACACTTCAACCTGTTTCTTCTTTTGACAAGGATGCATTATTGAGGTCAGATCTTGCACTGAAGTCAAATAAACCACAGACAGAGTTTTTCTGTAAAACAT TGACAGCAAGTGATACAAGCACTCATGGAGGTTTCTCCGTGCCTCGCCGTGCAGCTGAAAAGACATTCCCGCCTCTTGATTTCTCCATGCAACCACCTGC TCAAGAACTTGTAGCTAGGGATTTGCATGATAATGTTTGGACTTTCCGGCATATCTATCGTGGACAACCAAAGCGTCACTTGCTTACAACTGGGTGGAGC TTATTTGTCAGTGGGAAGAGGCTTTTTGCCGGTGACTCAGTTTTATTTATGAGAGATGAAAAGCAGCAGCTTCTATTGGGCATCAGAAGGGCTAACAGGC AACCTACCAACTTATCATCGTCGGTATTGTCAAGTGATAGCATGCATATTGGGATCCTAGCTGCTGCAGCCCATGCAGCAGCAAACAATAGCCCCTTTAC CGTGTACTATAATCCAAGGGCAAGTCCATCAGAATTTGTTATCCCTTTAGCCAAGTATTACAAGGCAGTGTACAGCAACCAAATATCACTTGGCATGCGC TTCCGCATGATGTTTGAAACTGAAGAGTCAGGAACAAGAAGGCATATGGGCACCATTACTGGTATCAGTGATCTTGATGCTGTAAGATGGAAAAACTCAC AATGGCGTAATTTGCAGGTTGGTTGGGATGAGTCAACTGCTGGTGAAAGACGCAATAGAGTCTCGATCTGGGAGATCGAACCAGTGACTGCTCCATTTTT CATATGTCCTCCTCCATTTTTTAGATCTAAGCATCCAAGGCAACCGGGAATGCCAGATGATGATTCCACTGATTTTGATAGCCTATTCAAGAGGACTATG CCTTGGCTTGGTGATGATATCTACATGAAAGATCCCCAGGTTCTCCCTGGCCTAAGCCTAGCCCAGCGAATGAACATGCAGCAAAACCCTTCACTGGCAA ACTCAATGCAGCCCAATTATATGCAATCGTTGTCAGGGTCTGTTCTGCAGAATCTTCCTGGAGGTGATCTTTCCCGCCAGTTAGGCTTGTCATCACCTCA AATGCCTCAGCCAAACAACTTACAGTTCAATGCCCAAAGGCTGCCTCAGCAAGCACAACAGCTTGATCAGCTTCCAAAGCTACAGTCCTTGCTCAACCCA CTGGGTTCCATCATACAGTCACAGCAACAGATGGGTGACATCACTCAACAATCGAGGCAAAATATGATGGCTCAAACTCTACCCTCAAGTCAAGTTCAAG CCCAACTTCTGCAGCCTCAAACTCTTGCCCAGACCAATAACATTCTTCAGCAACAGCCATCTATTCAAAGCCATCAGCTTCTTAGAAACCTTCCGCAAAC CTTGCACCAGCAGCAGCAGAATCAACAGCAACATATTATGGGTCAGAACCAGCAGCAAAGCCTAATGCAATCTCAGTTGTCTGATCAAGTAAACCAACAT ATGCAAATGTCTGACAATCAGATTCAGTCTCAACTGATGCAGAAGCTTCAGCAGCAACAGCAATCAGTTTCAGCTCAGCAATCTGCTATGCATCAGGCTG GTCAACTTGGACAGCTTCAAGATTCACAAAGGCAGCTGCTGGATGCATCCCAGAGTTTTTCTAGGTCCATGACACCCAGCCAAATGTTGGAAATCCCTCA AACAACACCCACTTCTCTCCCTCAGCCAAATACTATTCCACAGCAGATGACTAAGAATAACAACCAAACCAATACTCGATTCTCACATCTGCCTCAACAG CTGAAACCTCAACAACAGCATTCTGGCATCATGCTGTTGTCAGAAATGGCTGGTCACATGGGACTTCCGCCGAGCTCAATGGCCAATCAGCTCTCCACAG CTGGTAGCAGTATATTGACTGCAGCAGCTGGACCAGGACAGTCTGGTATCACTGATGATGTTCCTTCCTGTTCTACTTCACCTTCCACAAACAATTGTCC AAACATAGTTCAACCAATGATCAACGGCTGGGCCCACCGAAGCACAGCAATGGGAGAGGACATGGCTCAGTCTGCCGTGACACTCTTTAGCCCTAGTGCA TTGGAAACCGTGTCCTCTAATGGTAATTTAGTTAAAGATCTGCTGCAGAAATCTGAGGTTAAGCCATCATTGAACATCTCCAAGAATCAAAACCCAGGAT TATTTTCCTCGCAAACATACCTAAATGGGGTAGCTGCCCAGATAGATTATTTGGACACATCATCTTCTACAACTTCTGTTTGCCTATCACAAAATGATGT CCATTTGCAGCAGAATAACAATTCACTGTCATATAATCCCCAATCAGTGTTGTTGAGAGACGCAAGCCATGATGGTGAGCTCCAGGGAGATCCGAGGAAT AATATTTTATATGGGACAAACATTGATAGCCAACTTGTGATGCCAATAAATTCTGACCATTTATTAACAAAGGGCATGATGGGGCTGGGGAAGGACTTCT CAAATAATTTCTCTTCAGGAGGCATGCTTACAAATTGTGAAAATTCCAAAGATCCTCAACAGGAGCTTTCATCGGCAATTGTTTCCAAGTCATTTGGAGT TCCAGATATGCCATTCAATTCAATTGACTCAACAATCAATGACAGTAGCTTATTGAATAGAGGTTCTTGGGCTCCTCCACAGCAACAGTTTCAGCGAATG CGAACATATACAAAGGTGTACAAGCGTGGAGCTGTAGGAAGGTCAATTGACATAACGCGGTATTCAGGTTATGACGAGCTTAAGCAGGATCTGGCTCGTA GGTTTGGTATAGAGGGACAGTTGGAAGATCAACAAAGGATAGGCTGGAAACTTGTTTACACTGATCACGAGAATGATGTCCTGCTAGTGGGGGATGATCC TTGGGAAGAGTTTGTGAACTGTGTCCGCTGCATCAAGATCCTGTCTCCTCAAGAAGTCCAACAGATGAGCTTGGATGGAGATTTTGGCAACTCTGTCCTT CCTAATCAAGCCGGCAGTAGTTCTGATAATGTCAATGCATAA
AA sequence Show only first row Show all	>Potri.018G145800.2 pacid=42801447 polypeptide=Potri.018G145800.2.p locus=Potri.018G145800 ID=Potri.018G145800.2.v4.1 annot-version=v4.1 MKSPANGAAAAVTNGEGVEKKSINPELWQACAGPLVNLPAAGTHVVYFPQGHSEQVAASLKKDVNAQIPNYPNLPSKLLCLLHNVTLHADPETDEVYVQM TLQPVSSFDKDALLRSDLALKSNKPQTEFFCKTLTASDTSTHGGFSVPRRAAEKTFPPLDFSMQPPAQELVARDLHDNVWTFRHIYRGQPKRHLLTTGWS LFVSGKRLFAGDSVLFMRDEKQQLLLGIRRANRQPTNLSSSVLSSDSMHIGILAAAAHAAANNSPFTVYYNPRASPSEFVIPLAKYYKAVYSNQISLGMR FRMMFETEESGTRRHMGTITGISDLDAVRWKNSQWRNLQVGWDESTAGERRNRVSIWEIEPVTAPFFICPPPFFRSKHPRQPGMPDDDSTDFDSLFKRTM PWLGDDIYMKDPQVLPGLSLAQRMNMQQNPSLANSMQPNYMQSLSGSVLQNLPGGDLSRQLGLSSPQMPQPNNLQFNAQRLPQQAQQLDQLPKLQSLLNP LGSIIQSQQQMGDITQQSRQNMMAQTLPSSQVQAQLLQPQTLAQTNNILQQQPSIQSHQLLRNLPQTLHQQQQNQQQHIMGQNQQQSLMQSQLSDQVNQH MQMSDNQIQSQLMQKLQQQQQSVSAQQSAMHQAGQLGQLQDSQRQLLDASQSFSRSMTPSQMLEIPQTTPTSLPQPNTIPQQMTKNNNQTNTRFSHLPQQ LKPQQQHSGIMLLSEMAGHMGLPPSSMANQLSTAGSSILTAAAGPGQSGITDDVPSCSTSPSTNNCPNIVQPMINGWAHRSTAMGEDMAQSAVTLFSPSA LETVSSNGNLVKDLLQKSEVKPSLNISKNQNPGLFSSQTYLNGVAAQIDYLDTSSSTTSVCLSQNDVHLQQNNNSLSYNPQSVLLRDASHDGELQGDPRN NILYGTNIDSQLVMPINSDHLLTKGMMGLGKDFSNNFSSGGMLTNCENSKDPQQELSSAIVSKSFGVPDMPFNSIDSTINDSSLLNRGSWAPPQQQFQRM RTYTKVYKRGAVGRSIDITRYSGYDELKQDLARRFGIEGQLEDQQRIGWKLVYTDHENDVLLVGDDPWEEFVNCVRCIKILSPQEVQQMSLDGDFGNSVL PNQAGSSSDNVNA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G19220	ARF	IAA22, ARF11, A...	indole-3-acetic acid inducible...		Potri.018G145800 [exp]	0	1	Pt-CSARF2.3
AT1G70950			TPX2 (targeting protein for Xk...		Potri.010G113000 [exp]	1.73	0.7809
AT3G15760			unknown protein		Potri.018G131100 [exp]	4.24	0.7064
AT1G69170	SBP	SPL6	Squamosa promoter-binding prot...		Potri.010G154300 [exp]	4.69	0.7175
AT5G12330		LRP1	LATERAL ROOT PRIMORDIUM 1, Lat...		Potri.003G196100 [exp]	6.48	0.6951
AT1G30620		MURUS4, HSR8, U...	UDP-D-XYLOSE 4-EPIMERASE 1, MU...		Potri.016G020000 [exp]	7.48	0.6910
AT4G24240	WRKY	ATWRKY7, WRKY7	WRKY DNA-binding protein 7 (.1...		Potri.005G141400 [exp]	7.93	0.6883	Pt-WRKY15.2
AT2G16250			Leucine-rich repeat protein ki...		Potri.004G155100 [exp]	14.83	0.6183
AT1G33055			unknown protein		Potri.001G452500 [exp]	19.44	0.6697
AT3G22440			FRIGIDA-like protein (.1)		Potri.008G153000 [exp]	21.16	0.6723
AT3G16770	AP2_ERF	RAP2.03, ATEBP,...	RELATED TO AP2 3, ETHYLENE RES...		Potri.008G210900 [exp]	21.21	0.6760	Pt-RAP2.4,ERF35

Compare expression of checked genes

Potri.018G145800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.