Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30490 622 / 0 REF3, CYP73A5, ATC4H REDUCED EPRDERMAL FLUORESCENCE 3, CINNAMATE 4-HYDROXYLASE, cinnamate-4-hydroxylase (.1) AT5G07990 228 / 3e-68 CYP75B1, D501, TT7 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) AT3G26280 225 / 4e-67 CYP71B4 "cytochrome P450, family 71, subfamily B, polypeptide 4", cytochrome P450, family 71, subfamily B, polypeptide 4 (.1) AT2G40890 225 / 5e-67 REF8, CYP98A3, C3H1 cytochrome P450, family 98, subfamily A, polypeptide 3 (.1) AT3G48290 214 / 3e-63 CYP71A24 "cytochrome P450, family 71, subfamily A, polypeptide 24", cytochrome P450, family 71, subfamily A, polypeptide 24 (.1.2) AT1G74550 214 / 3e-63 CYP98A9 cytochrome P450, family 98, subfamily A, polypeptide 9 (.1) AT3G48280 214 / 6e-63 CYP71A25 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) AT4G13310 211 / 8e-62 CYP71A20 "cytochrome P450, family 71, subfamily A, polypeptide 20", cytochrome P450, family 71, subfamily A, polypeptide 20 (.1.2) AT3G26270 211 / 8e-62 CYP71B25 "cytochrome P450, family 71, subfamily B, polypeptide 25", cytochrome P450, family 71, subfamily B, polypeptide 25 (.1) AT4G22710 210 / 3e-61 CYP706A2 "cytochrome P450, family 706, subfamily A, polypeptide 2", cytochrome P450, family 706, subfamily A, polypeptide 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G157900 [exp] 645 / 0 AT2G30490 826 / 0.0 REDUCED EPRDERMAL FLUORESCENCE 3, CINNAMATE 4-HYDROXYLASE, cinnamate-4-hydroxylase (.1) Potri.019G130700 [exp] 635 / 0 AT2G30490 812 / 0.0 REDUCED EPRDERMAL FLUORESCENCE 3, CINNAMATE 4-HYDROXYLASE, cinnamate-4-hydroxylase (.1) Potri.007G082900 [exp] 236 / 4e-71 AT3G26300 377 / 2e-126 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G083500 [exp] 234 / 1e-70 AT3G26300 377 / 2e-126 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G084800 [exp] 233 / 3e-70 AT3G26300 380 / 3e-127 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.016G031000 [exp] 230 / 6e-69 AT2G40890 776 / 0.0 cytochrome P450, family 98, subfamily A, polypeptide 3 (.1) Potri.016G031100 [exp] 229 / 2e-68 AT2G40890 796 / 0.0 cytochrome P450, family 98, subfamily A, polypeptide 3 (.1) Potri.007G083000 [exp] 225 / 5e-67 AT3G26330 368 / 8e-123 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) Potri.016G137600 [exp] 223 / 4e-66 AT3G48270 401 / 2e-135 "cytochrome P450, family 71, subfamily A, polypeptide 26", cytochrome P450, family 71, subfamily A, polypeptide 26 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027598 [exp] 816 / 0 AT2G30490 630 / 0.0 REDUCED EPRDERMAL FLUORESCENCE 3, CINNAMATE 4-HYDROXYLASE, cinnamate-4-hydroxylase (.1) Lus10035011 [exp] 643 / 0 AT2G30490 867 / 0.0 REDUCED EPRDERMAL FLUORESCENCE 3, CINNAMATE 4-HYDROXYLASE, cinnamate-4-hydroxylase (.1) Lus10034449 [exp] 641 / 0 AT2G30490 882 / 0.0 REDUCED EPRDERMAL FLUORESCENCE 3, CINNAMATE 4-HYDROXYLASE, cinnamate-4-hydroxylase (.1) Lus10021671 [exp] 593 / 0 AT2G30490 778 / 0.0 REDUCED EPRDERMAL FLUORESCENCE 3, CINNAMATE 4-HYDROXYLASE, cinnamate-4-hydroxylase (.1) Lus10019110 [exp] 395 / 7e-135 AT2G30490 555 / 0.0 REDUCED EPRDERMAL FLUORESCENCE 3, CINNAMATE 4-HYDROXYLASE, cinnamate-4-hydroxylase (.1) Lus10019457 [exp] 247 / 3e-75 AT3G48280 467 / 2e-161 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10043308 [exp] 241 / 5e-73 AT3G48280 463 / 5e-160 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10017961 [exp] 234 / 3e-70 AT3G48280 502 / 4e-175 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10041951 [exp] 223 / 6e-66 AT3G48280 519 / 0.0 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10033524 [exp] 221 / 2e-65 AT2G40890 866 / 0.0 cytochrome P450, family 98, subfamily A, polypeptide 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.018G146100.1 pacid=42801060 polypeptide=Potri.018G146100.1.p locus=Potri.018G146100 ID=Potri.018G146100.1.v4.1 annot-version=v4.1 ATGGCTTCTTTTGTTACAAAATCAATGGGTTTCACTCTTTTAGCAGTAGCATCTGTTTCATGCATAAAGTTTGCATGCCCTAACCTCTCCACATATTTCT CACCACTACCCATCTCTGTCATCCTCCCTCTACTTCCACTAATCGTGTACTTGTTTAGCTCCGTTTTTACCAAGTCTTCAACTGGCGACCTACCTCCTGG CCCTGTCTCGTACCCAATGTTTGGCAATTGGCTCCAAGTTGGCAATGACCTGAACCACCGTCTTCTAGCTTCTATGTCACAAACATATGGTCCTGTGTTC CTACTTAAACTTGGTTCAAAGAACTTAGCTGTTGTATCCGACCCTGAACTAGCCAACCAGGTCCTGCACACACAGGGTGTTGAATTCGGGTCTCGCCCAC GTAACGTTGTCTTCGATATCTTCACCGGCAATGGACAAGACATGGTGTTCACGATCTATGGTGAGCATTGGAGAAAAATGCGTAGAATCATGACACTACC GTTTTTCACCAACAAAGTTGTGAACCAATATAGTACTTCATGGGAGCAGGAAATGGACCTTGTGGTCGATGACCTTAGAGCCAATGAGAAAGTTAGGACC GAAGGGATTGTTATTAGAAAACGTCTGCAGCTGATGTTGTACAATATTATGTACAGGATGATGTTTGATGCAAAATTTCAGTCACAGGAGGACCCTTTGT TTGTTCAAGCAACAAGGTTTAATTCCGAGAGAAGTCGGTTGGCACAAAGTTTCGAGTATAATTATGGAGATTTTATCCCTTGGCTTAGACCATTTTTAAG GGGGTACTTGAACAAGTGCAGGGATTTGCAGCAGAGGAGGCTAGCTTTCTTCAACAACTATTATATTGAGAAAAGAAGGAAAATAATGGCTGCCAATGGA GAGAAGCACAAGGTAAGCTGTGCCATGGATCACATAATACAGGCTCAAATGAAAGGAGAAATCAGTGAAGAAAATGTACTTTACATTGTGGAGAACATTA ATGTTGCTGCTATAGAGACAACATTGTGGTCTATGGAATGGGCCATAGCTGAACTGGTCAATCATCCGACTGTTCAGAGGAAGATCAGAGATGAAATCAG AGCCGTCCTAAAGGGAAGTCCAGTTACAGAATCTAACCTGCATGAGCTACCATACTTGCAAGCCACAATAAAAGAGACATTAAGGCTACACACCCCAATT CCCTTGTTAGTGCCACATATGAACCTTGAAGAAGCAAAGCTAGGAGGGTTTACCATTCCTAAAGAGTCAAAGGTGGTCGTCAATGCATGGTGGCTAGCTA ACAACCCTGAATGGTGGGAGAAACCATCAGAATTCCGGCCAGAGCGATTCTTGGAAGAAGAACGTGACACAGAGGCCATCGTTGGTGGAAAGGTTGATTT TCGGTTCCTACCATTTGGCGTGGGTAGACGTTCCTGCCCAGGGATCATACTTGCAATGCCAATCCTAGGACTGATTGTTGCAAGACTGGTGTCGAATTTT GAGATGATAGCTCCTCCTGGGATGGAGAAGATTGATGTGAGTGAAAAAGGAGGGCAGTTCAGCTTGCACATTGCAAGCCATTCCACTGTTGTTTTCAAAC CAACCAAAGCATGA
AA sequence Show only first row Show all	>Potri.018G146100.1 pacid=42801060 polypeptide=Potri.018G146100.1.p locus=Potri.018G146100 ID=Potri.018G146100.1.v4.1 annot-version=v4.1 MASFVTKSMGFTLLAVASVSCIKFACPNLSTYFSPLPISVILPLLPLIVYLFSSVFTKSSTGDLPPGPVSYPMFGNWLQVGNDLNHRLLASMSQTYGPVF LLKLGSKNLAVVSDPELANQVLHTQGVEFGSRPRNVVFDIFTGNGQDMVFTIYGEHWRKMRRIMTLPFFTNKVVNQYSTSWEQEMDLVVDDLRANEKVRT EGIVIRKRLQLMLYNIMYRMMFDAKFQSQEDPLFVQATRFNSERSRLAQSFEYNYGDFIPWLRPFLRGYLNKCRDLQQRRLAFFNNYYIEKRRKIMAANG EKHKVSCAMDHIIQAQMKGEISEENVLYIVENINVAAIETTLWSMEWAIAELVNHPTVQRKIRDEIRAVLKGSPVTESNLHELPYLQATIKETLRLHTPI PLLVPHMNLEEAKLGGFTIPKESKVVVNAWWLANNPEWWEKPSEFRPERFLEEERDTEAIVGGKVDFRFLPFGVGRRSCPGIILAMPILGLIVARLVSNF EMIAPPGMEKIDVSEKGGQFSLHIASHSTVVFKPTKA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G30490		REF3, CYP73A5, ...	REDUCED EPRDERMAL FLUORESCENCE...		Potri.018G146100 [exp]	0	1
AT5G53050			alpha/beta-Hydrolases superfam...		Potri.012G017100 [exp]	1.00	0.8518
AT1G28370	AP2_ERF	AtERF11	ERF domain protein 11 (.1)		Potri.007G043400 [exp]	1.41	0.8008
AT5G39890			Protein of unknown function (D...		Potri.017G079400 [exp]	4.24	0.7828
AT2G36090			F-box family protein (.1)		Potri.001G452000 [exp]	8.71	0.7461
AT5G16600	MYB	ATMYB43	myb domain protein 43 (.1)		Potri.017G130300 [exp]	9.16	0.7915	Pt-MYB20.1,MYB152
AT4G32480			Protein of unknown function (D...		Potri.019G099600 [exp]	16.43	0.7503
AT2G43320			S-adenosyl-L-methionine-depend...		Potri.007G127300 [exp]	20.97	0.7426
AT5G24610			unknown protein		Potri.015G000900 [exp]	24.57	0.6479
AT5G50915	bHLH	bHLH137	basic helix-loop-helix (bHLH) ...		Potri.003G164500 [exp]	25.15	0.7916
AT5G42930			alpha/beta-Hydrolases superfam...		Potri.014G027400 [exp]	34.35	0.7832

Compare expression of checked genes

Potri.018G146100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.