Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20700 76 / 2e-16 Protein of unknown function (DUF581) (.1) AT1G19200 67 / 2e-13 Protein of unknown function (DUF581) (.1) AT1G74940 67 / 3e-13 Protein of unknown function (DUF581) (.1) AT1G22160 66 / 3e-13 Protein of unknown function (DUF581) (.1) AT5G65040 59 / 3e-11 Protein of unknown function (DUF581) (.1) AT1G78020 59 / 6e-11 Protein of unknown function (DUF581) (.1) AT5G11460 61 / 8e-11 Protein of unknown function (DUF581) (.1) AT5G47060 55 / 3e-09 Protein of unknown function (DUF581) (.1) AT4G17670 54 / 4e-09 Protein of unknown function (DUF581) (.1) AT1G53885 53 / 7e-09 Protein of unknown function (DUF581) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G078300 [exp] 302 / 2e-104 AT5G20700 91 / 8e-22 Protein of unknown function (DUF581) (.1) Potri.006G139200 [exp] 87 / 2e-20 AT5G20700 139 / 2e-40 Protein of unknown function (DUF581) (.1) Potri.006G245200 [exp] 63 / 2e-11 AT5G11460 144 / 2e-39 Protein of unknown function (DUF581) (.1) Potri.018G035400 [exp] 61 / 8e-11 AT5G11460 144 / 1e-39 Protein of unknown function (DUF581) (.1) Potri.002G092900 [exp] 59 / 1e-10 AT1G22160 137 / 5e-42 Protein of unknown function (DUF581) (.1) Potri.005G168900 [exp] 58 / 1e-10 AT1G22160 142 / 2e-44 Protein of unknown function (DUF581) (.1) Potri.002G050800 [exp] 55 / 9e-09 AT3G22550 174 / 3e-53 Protein of unknown function (DUF581) (.1) Potri.008G154600 [exp] 55 / 1e-08 AT3G22550 219 / 2e-70 Protein of unknown function (DUF581) (.1) Potri.003G071900 [exp] 53 / 1e-08 AT1G53903 108 / 4e-31 Protein of unknown function (DUF581) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022948 [exp] 135 / 3e-39 AT5G20700 80 / 5e-18 Protein of unknown function (DUF581) (.1) Lus10027595 [exp] 126 / 1e-35 AT5G20700 76 / 1e-16 Protein of unknown function (DUF581) (.1) Lus10011923 [exp] 61 / 3e-11 AT1G74940 81 / 3e-19 Protein of unknown function (DUF581) (.1) Lus10027642 [exp] 61 / 4e-11 AT1G74940 89 / 6e-22 Protein of unknown function (DUF581) (.1) Lus10012417 [exp] 61 / 2e-10 AT3G22550 140 / 4e-38 Protein of unknown function (DUF581) (.1) Lus10006499 [exp] 56 / 1e-09 AT5G49120 79 / 2e-19 Protein of unknown function (DUF581) (.1) Lus10042606 [exp] 57 / 2e-09 AT3G22550 139 / 1e-39 Protein of unknown function (DUF581) (.1) Lus10006102 [exp] 56 / 3e-09 AT3G22550 193 / 1e-60 Protein of unknown function (DUF581) (.1) Lus10010568 [exp] 56 / 4e-09 AT3G22550 187 / 2e-58 Protein of unknown function (DUF581) (.1) Lus10037493 [exp] 54 / 6e-09 AT5G49120 83 / 1e-20 Protein of unknown function (DUF581) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0175 [poplar] [flax] TRASH PF04570 [poplar] [flax] zf-FLZ zinc-finger of the FCS-type, C2-C2
Representative CDS sequence Show only first row Show all	>Potri.018G146800.1 pacid=42801959 polypeptide=Potri.018G146800.1.p locus=Potri.018G146800 ID=Potri.018G146800.1.v4.1 annot-version=v4.1 ATGTCTCAGTTTGGTCTGAAAATGGAGAAAAAGAGGCCAAGAATCAGTCTTTCTTTGTTTACAACCTTAACTGAGACCTTTTCAATGGCTAACAAATCAC CTAGGAATTTTAAGAATGGTGGTAGTGCTGTTGGGTTGGGAATTGTTGCTGCAATGGATGAGTCTGATAAAGTCTCTGACTTTGCTTTGTCACCAAGATC CAGTCCTGTCCCTGTTGTTTCATTGAAGAAACCTGCTTCATGTTTCAAAGAAGGAGGCATTGGGGTGTGGAATTTTGATAAAGGTGGTGTTGTTGTTGAT GAGAATGATGAGAGTTATACTTGTGTGATTTCTCATGTTGGGAATAATGTTATTAAGAAGAGTGTTTATTATGATGATAAGGTTTGTGTTGATTCAGTGA GTTGGTTTGATGTTGGTTCTGGACTGCTTTATGCTGCTTCACCAGCTGTGATGATGCCCATTGATGTTGCTACTGCTGAAAGGAGGGAGTTTTGGAGCAA GGATTTCTTGAGTTCTTGCCATCTCTGCAAGAAGCTGCTTGAGGGGCTGGACATTTTCATGTACAGGGGTGAAAATGCATTTTGCAGTCCAGAGTGCCGC GATAAACATATCAGAATTGAAGATTTCAAGGAGAAGTCTGGGTCTGAAGCTCGGAAGAAACAAGAGTGCTCTGTAACGCCCTGCTCCTCTCCTCTGTTAT TTTTTGCTGGAGTAGCTGCAGCATAG
AA sequence Show only first row Show all	>Potri.018G146800.1 pacid=42801959 polypeptide=Potri.018G146800.1.p locus=Potri.018G146800 ID=Potri.018G146800.1.v4.1 annot-version=v4.1 MSQFGLKMEKKRPRISLSLFTTLTETFSMANKSPRNFKNGGSAVGLGIVAAMDESDKVSDFALSPRSSPVPVVSLKKPASCFKEGGIGVWNFDKGGVVVD ENDESYTCVISHVGNNVIKKSVYYDDKVCVDSVSWFDVGSGLLYAASPAVMMPIDVATAERREFWSKDFLSSCHLCKKLLEGLDIFMYRGENAFCSPECR DKHIRIEDFKEKSGSEARKKQECSVTPCSSPLLFFAGVAAA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G20700			Protein of unknown function (D...		Potri.018G146800 [exp]	0	1
AT5G63220			unknown protein		Potri.010G217400 [exp]	2.64	0.6306
AT1G09020		ATSNF4, SNF4	homolog of yeast sucrose nonfe...		Potri.013G020400 [exp]	4.24	0.5708	SNF4.4
AT3G60800			DHHC-type zinc finger family p...		Potri.003G115600 [exp]	10.39	0.5626
AT1G70780			unknown protein		Potri.017G125300 [exp]	40.98	0.4580
AT2G16530			3-oxo-5-alpha-steroid 4-dehydr...		Potri.009G125200 [exp]	57.54	0.4658
AT4G27040		VPS22	EAP30/Vps36 family protein (.1...		Potri.001G424600 [exp]	74.22	0.4751
AT3G02520		GENERALREGULATO...	general regulatory factor 7 (....		Potri.017G113300 [exp]	89.39	0.4503	GF14.5
AT4G25480	AP2_ERF	CBF3, DREB1A, A...	C-REPEAT BINDING FACTOR 3, de...		Potri.009G147700 [exp]	97.14	0.4537
AT1G08960		CCX5, AtCXX5, A...	cation calcium exchanger 5, A...		Potri.013G025100 [exp]	139.45	0.4104	Pt-CAX11.1
AT4G27290			S-locus lectin protein kinase ...		Potri.010G018400 [exp]	152.81	0.4061

Compare expression of checked genes

Potri.018G146800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.