Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G42630 432 / 7e-150 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G14190 93 / 4e-20 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G02860 81 / 5e-16 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G53170 74 / 6e-14 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G18940 65 / 7e-11 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G74580 62 / 5e-10 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63080 61 / 1e-09 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G30825 58 / 6e-09 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G59040 57 / 1e-08 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT1G06580 57 / 1e-08 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G297300 [exp] 80 / 1e-15 AT5G02860 1129 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.014G149500 [exp] 74 / 5e-14 AT4G14190 411 / 1e-139 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G058300 [exp] 67 / 6e-12 AT3G53170 618 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.009G092100 [exp] 64 / 1e-10 AT5G02860 1146 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.017G108600 [exp] 64 / 1e-10 AT5G38730 762 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G250200 [exp] 61 / 8e-10 AT5G42310 974 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.006G264800 [exp] 61 / 1e-09 AT4G31850 1428 / 0.0 proton gradient regulation 3 (.1) Potri.010G217600 [exp] 59 / 4e-09 AT2G16880 677 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G015900 [exp] 59 / 5e-09 AT5G64320 878 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020002 [exp] 68 / 8e-12 AT2G18940 1015 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015530 [exp] 67 / 1e-11 AT2G18940 1010 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013894 [exp] 66 / 4e-11 AT5G02860 1047 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10002107 [exp] 66 / 4e-11 AT5G02860 1040 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10024893 [exp] 65 / 4e-11 AT3G53170 543 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10036600 [exp] 64 / 7e-11 AT4G30825 428 / 3e-144 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027829 [exp] 62 / 6e-10 AT3G59040 703 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10017134 [exp] 61 / 1e-09 AT2G35130 785 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10011849 [exp] 60 / 1e-09 AT5G48730 681 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10008136 [exp] 60 / 2e-09 AT5G39350 639 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13812 [poplar] [flax] PPR_3 Pentatricopeptide repeat domain
Representative CDS sequence Show only first row Show all	>Potri.018G146900.1 pacid=42800350 polypeptide=Potri.018G146900.1.p locus=Potri.018G146900 ID=Potri.018G146900.1.v4.1 annot-version=v4.1 ATGGAAACAAAAACAGTAATAGCAGCAACTACATGTTATGCTAACGTTATTGGGTCTTATAAACCTAAGCGTTTTGCTATTTTTTCCATCAAAAGAGACC CAAAAAAGAGAGCTTTGGCTCAAAAGATGATACGGCAATGGAAGAGGGATCAGGGTGTTTTTGGAAAGGAAACTTGTGCCGATTGTGCATCATTAATACA GACATTGTGTAAGCATAGAAGGCCTCATCTAGCTGAGGAGCTTTTACTAGAGTTGAAATGTGAAGGGTTTTTACCAGACAACCGTACCCTTTCAGCTATG ATGCTTTGTTATGCTGATAGTGGGCTTTTACCTCAAGCTCAGGCGATATGGGAGGAAATGTTGTATAGTTCTTTTGTGCCTAGTGTTCAAGTAATTTCGG ATTTAATTGACATTTATGCAAAGAGTGGACTTTTTGATGAAGTAATCAAAATTCTTGATCAGTTGAGTTCTTTGAGAACTTTTGACTTTTTACCTCAGGT TTACTCACTGGCCATCTCTTGCTTTGGAAAGGGTGGTCAACTTGAGTTGATGGAGGATACATTGAAGAAGATGGTCTCGAAAGGTTTTTGGGTAGACTCT GCCACTGGCAATGCTTTTGTTGTTTATTATAGTCTTCACGGTTCTTTGGCAGAGATGGAAGCTGCTTATGATCGCCTTAAAAGGTCTAGACTCCTCATAG AGAGAGAAGGAATCAGAGCAATGTCATTTGCGTATATAAAGGAAAGAAAATTTTATGGGCTAAGCGAGTTCTTAAGGGATGTAGGTCTTGGTAGGAAAAA TCTGGGAAACCTTATTTGGAACCTTCTTCTTCTATCTTATTCTGCTAATTTTAAGATGAAAACTTTGCAGAGGGAATTTCTGAACATGTTGGAAGCAGGA TTTCATCCTGATCTTACTACATTTAATATACGAGCTTTGGCTTTTTCAAGAATGTCTTTGTTGTGGGATCTCCATCTTGGCCTTGAACATATGAAACATG ATAAGGTTGCTCCTGATCTTGTGACTTATGGTTGTATTGTTGATGCATACTTGGATAGAAGATTGGTTAGAAACTTGGAATTTGCTCTCAGCAAGATGCA TGTGGATAATTCTCCAGTGTTATCAACAGATCCTTTTGTGTTTGAAGTTTTCGGGAAAGGGGATTTCCATTCAAGCTCAGAGGCATTTATGGAATTTAAG AGGCAGAGGAAGTGGACTTACAGAGAGCTCATTAAAATATATCTCAGGAAACAACACAGAAGTAAACATATCTTTTGGAATTACTGA
AA sequence Show only first row Show all	>Potri.018G146900.1 pacid=42800350 polypeptide=Potri.018G146900.1.p locus=Potri.018G146900 ID=Potri.018G146900.1.v4.1 annot-version=v4.1 METKTVIAATTCYANVIGSYKPKRFAIFSIKRDPKKRALAQKMIRQWKRDQGVFGKETCADCASLIQTLCKHRRPHLAEELLLELKCEGFLPDNRTLSAM MLCYADSGLLPQAQAIWEEMLYSSFVPSVQVISDLIDIYAKSGLFDEVIKILDQLSSLRTFDFLPQVYSLAISCFGKGGQLELMEDTLKKMVSKGFWVDS ATGNAFVVYYSLHGSLAEMEAAYDRLKRSRLLIEREGIRAMSFAYIKERKFYGLSEFLRDVGLGRKNLGNLIWNLLLLSYSANFKMKTLQREFLNMLEAG FHPDLTTFNIRALAFSRMSLLWDLHLGLEHMKHDKVAPDLVTYGCIVDAYLDRRLVRNLEFALSKMHVDNSPVLSTDPFVFEVFGKGDFHSSSEAFMEFK RQRKWTYRELIKIYLRKQHRSKHIFWNY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G42630			Pentatricopeptide repeat (PPR)...		Potri.018G146900 [exp]	0	1
AT2G45630			D-isomer specific 2-hydroxyaci...		Potri.014G073500 [exp]	3.87	0.9097
					Potri.018G145600 [exp]	4.24	0.9214
AT2G13440			glucose-inhibited division fam...		Potri.005G066300 [exp]	5.47	0.9274
AT4G30825			Tetratricopeptide repeat (TPR)...		Potri.006G005100 [exp]	7.61	0.9328
AT5G55580			Mitochondrial transcription te...		Potri.001G361800 [exp]	11.61	0.9273
AT3G56040		UGP3	UDP-glucose pyrophosphorylase ...		Potri.010G185800 [exp]	13.07	0.9166
AT3G44110		ATJ3	DNAJ homologue 3 (.1.2)		Potri.001G215132 [exp]	16.12	0.8867
AT1G79080			Pentatricopeptide repeat (PPR)...		Potri.011G144300 [exp]	17.49	0.9066
AT5G13950			unknown protein		Potri.014G144100 [exp]	18.54	0.8773
AT2G01320		ABCG7	ATP-binding cassette G7, ABC-2...		Potri.010G115000 [exp]	21.54	0.9259

Compare expression of checked genes

Potri.018G146900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.