Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20310 162 / 8e-46 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) AT4G31230 137 / 6e-35 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT5G35380 137 / 1e-34 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT2G24370 134 / 6e-34 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT1G78940 127 / 1e-31 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1.2) AT2G07020 124 / 2e-30 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT1G16760 122 / 1e-29 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT3G20200 115 / 2e-27 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT5G26150 112 / 2e-26 protein kinase family protein (.1) AT5G12000 106 / 2e-24 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G002400 [exp] 164 / 5e-44 AT2G24370 956 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.006G078500 [exp] 140 / 7e-36 AT2G24370 824 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.018G061600 [exp] 137 / 6e-35 AT5G12000 714 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.007G001900 [exp] 132 / 5e-33 AT1G78940 757 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1.2) Potri.004G170901 [exp] 127 / 1e-31 AT1G78940 584 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1.2) Potri.004G170742 [exp] 127 / 2e-31 AT1G78940 786 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1.2) Potri.006G225300 [exp] 119 / 6e-29 AT5G12000 749 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.014G001700 [exp] 107 / 8e-25 AT1G78940 783 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1.2) Potri.001G198300 [exp] 107 / 1e-24 AT5G12000 639 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017145 [exp] 160 / 9e-45 AT5G35380 207 / 3e-60 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10026989 [exp] 143 / 8e-37 AT2G24370 1014 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10024212 [exp] 135 / 5e-34 AT2G24370 780 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10009896 [exp] 125 / 1e-30 AT2G24370 632 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10008609 [exp] 122 / 5e-30 AT1G16760 417 / 3e-137 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10042205 [exp] 122 / 1e-29 AT1G16760 691 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10040573 [exp] 113 / 1e-26 AT2G24370 815 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10020184 [exp] 99 / 2e-23 AT2G24370 286 / 2e-91 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10027592 [exp] 91 / 8e-21 AT3G20200 175 / 2e-50 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10008542 [exp] 92 / 1e-19 AT2G24370 823 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0039 [poplar] [flax] HUP PF00582 [poplar] [flax] Usp Universal stress protein family
Representative CDS sequence Show only first row Show all	>Potri.018G147200.1 pacid=42800735 polypeptide=Potri.018G147200.1.p locus=Potri.018G147200 ID=Potri.018G147200.1.v4.1 annot-version=v4.1 ATGTTGAATCTAAGAGAGAATGCAGAGAGGAGGAGAGGAAGAGAGAGGGCAACAGCTGTGGCTATAGATAAGGATAAAAGCAGCCAATCTGCTCTCATTT GGGCTGCTGATAATCTTGTCACCAGAGACCTTGTTTTGAAACTTGTCCATGTTAAAGATAGACAAAATGCAGTTTCAAATGACCATGATGCACCAGAGGA ACAACAAACCGATAGTCAAAAGATGGACTTCTTTCTTCCATTTCGATGTTTCTGTAGGCGTCGACGAGTACGATGCGAAACTGTGCTACTTGAGGATTCA GATGTGGCAAGAGCACTCATTGGATATGTTTACCGATATGGAGTTGACACTTTGTTGCTTGGTGGAGGATCAAGAAATGGCCTTTCCAGACTATTTAAGA CTGTTGATATTCCTGGCACTGTGTTGAAAAGGGCACCGAATTTCTGCACTGTATATGTAGTTTCCAAAGGGAAGGTCAGTGGTTTGCGAAACGCAACTCG TCCAGTCCCAGCTAGATATGCAGCTGGAGGGGCACTGCTTGTGCAGCGTAACTCGAGTGTTGATCTACCTACAGCCATAGCGGAAAGCTGGTATGATGAG CTCTCGCCGGATCACCCTGATAGCCCAACTGAAAGTTCTGAAAGGCCTAGCACTGATACCACATTCTTTGCTTTCTATGAAAATCTGGGGAATTCTGAAC TAACTGAAAACTTGCAAAAGGACTTGGATATGGATGAAAGAGACTTCGAATCAACACATTCAGGGTCCAGTTCCCCAGTTGAGCTTAGGGGTATTCCTGA ATTTAAAATTTTTGACAGTCATGCAGAACCATGGTTGGAACTGAATGAGGAAGGCCATGAAGATGAGGTTAGAAGGCTAAAAAAAGAGCTCAAGCAAACA ATAGATATGTATCATGCATCCTTAAAAGAAGCACTTGCTGCAAAACAAAAGGCAATGGAACTTGAACATTGGAAAATAATAGAGGAGAAAAGAATACTGG AGGCGAATCTAATCCAGGAAACTGCATTGAAGATGGTGGAGTGGGAGAAAGCAAAGAGTAGGGCTGCAAATGAAGCAGCAGAAGCAGCTCAGATGCGTGT TGAGATAGAGGTACAAAAGAGAATCAAAGCTGAAAAGAAAGTTCTCAAAGAGACTGAGGAAAAGAAGAAAGTTCTAGATGCTTTAGGACAATCCCACATA GTTGTCAAACATCAGAGCTTGTTCCACATGATAGTTGTTGTTCTTCTGTTTTACTTTTACTTCTCTGTATTTAAATGA
AA sequence Show only first row Show all	>Potri.018G147200.1 pacid=42800735 polypeptide=Potri.018G147200.1.p locus=Potri.018G147200 ID=Potri.018G147200.1.v4.1 annot-version=v4.1 MLNLRENAERRRGRERATAVAIDKDKSSQSALIWAADNLVTRDLVLKLVHVKDRQNAVSNDHDAPEEQQTDSQKMDFFLPFRCFCRRRRVRCETVLLEDS DVARALIGYVYRYGVDTLLLGGGSRNGLSRLFKTVDIPGTVLKRAPNFCTVYVVSKGKVSGLRNATRPVPARYAAGGALLVQRNSSVDLPTAIAESWYDE LSPDHPDSPTESSERPSTDTTFFAFYENLGNSELTENLQKDLDMDERDFESTHSGSSSPVELRGIPEFKIFDSHAEPWLELNEEGHEDEVRRLKKELKQT IDMYHASLKEALAAKQKAMELEHWKIIEEKRILEANLIQETALKMVEWEKAKSRAANEAAEAAQMRVEIEVQKRIKAEKKVLKETEEKKKVLDALGQSHI VVKHQSLFHMIVVVLLFYFYFSVFK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G20310			Adenine nucleotide alpha hydro...		Potri.018G147200 [exp]	0	1
AT2G33670		ATMLO5, MLO5	MILDEW RESISTANCE LOCUS O 5, S...		Potri.005G254800 [exp]	1.41	0.9912
AT1G18280			Bifunctional inhibitor/lipid-t...		Potri.015G036201 [exp]	2.00	0.9813
AT1G09380			nodulin MtN21 /EamA-like trans...		Potri.005G006600 [exp]	16.49	0.9743
AT3G54070			Ankyrin repeat family protein ...		Potri.006G281500 [exp]	17.66	0.9738
AT3G54070			Ankyrin repeat family protein ...		Potri.011G016400 [exp]	19.07	0.9736
AT4G27410	NAC	RD26, ANAC072	NAC (No Apical Meristem) domai...		Potri.009G052200 [exp]	20.19	0.9434
					Potri.008G040200 [exp]	22.00	0.9009
AT3G19090			RNA-binding protein (.1)		Potri.004G144700 [exp]	23.55	0.8447
AT3G54070			Ankyrin repeat family protein ...		Potri.011G016966 [exp]	24.73	0.9625
					Potri.010G096850 [exp]	28.49	0.9545

Compare expression of checked genes

Potri.018G147200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.