Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G35390 628 / 0 Leucine-rich repeat protein kinase family protein (.1) AT2G07040 603 / 0 ATPRK2A Leucine-rich repeat protein kinase family protein (.1) AT3G20190 531 / 0 Leucine-rich repeat protein kinase family protein (.1) AT4G31250 525 / 9e-179 Leucine-rich repeat protein kinase family protein (.1) AT3G42880 359 / 5e-115 Leucine-rich repeat protein kinase family protein (.1) AT1G50610 318 / 2e-98 Leucine-rich repeat protein kinase family protein (.1) AT3G02880 313 / 3e-97 Leucine-rich repeat protein kinase family protein (.1) AT5G16590 301 / 7e-93 LRR1 Leucine rich repeat protein 1, Leucine-rich repeat protein kinase family protein (.1) AT5G05160 265 / 5e-79 REDUCED IN LATERAL GROWTH1 (RUL1) REDUCED IN LATERAL GROWTH1, Leucine-rich repeat protein kinase family protein (.1) AT3G08680 262 / 5e-78 Leucine-rich repeat protein kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G078600 [exp] 1072 / 0 AT5G35390 660 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.018G002600 [exp] 580 / 0 AT3G20190 540 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.007G002000 [exp] 578 / 0 AT3G20190 437 / 4e-145 Leucine-rich repeat protein kinase family protein (.1) Potri.014G002700 [exp] 563 / 0 AT3G20190 415 / 1e-136 Leucine-rich repeat protein kinase family protein (.1) Potri.006G279300 [exp] 553 / 0 AT4G31250 570 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G139700 [exp] 409 / 4e-134 AT3G42880 611 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.001G166300 [exp] 384 / 4e-123 AT3G42880 513 / 6e-174 Leucine-rich repeat protein kinase family protein (.1) Potri.003G068800 [exp] 378 / 8e-122 AT3G42880 471 / 6e-159 Leucine-rich repeat protein kinase family protein (.1) Potri.004G170274 [exp] 356 / 7e-117 AT3G20190 408 / 1e-137 Leucine-rich repeat protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027597 [exp] 642 / 0 AT5G35390 603 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10017144 [exp] 636 / 0 AT5G35390 597 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10022946 [exp] 623 / 0 AT5G35390 593 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10020183 [exp] 548 / 0 AT4G31250 599 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10026988 [exp] 546 / 0 AT4G31250 606 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10035710 [exp] 356 / 3e-115 AT3G20190 509 / 3e-175 Leucine-rich repeat protein kinase family protein (.1) Lus10037297 [exp] 338 / 2e-110 AT3G20190 420 / 3e-143 Leucine-rich repeat protein kinase family protein (.1) Lus10034795 [exp] 334 / 5e-107 AT3G20190 445 / 1e-150 Leucine-rich repeat protein kinase family protein (.1) Lus10033339 [exp] 338 / 2e-106 AT3G20190 600 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10017756 [exp] 315 / 1e-97 AT2G26730 877 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.018G147300.1 pacid=42800668 polypeptide=Potri.018G147300.1.p locus=Potri.018G147300 ID=Potri.018G147300.1.v4.1 annot-version=v4.1 ATGCCATCAAAACTTCTTCACCTTCCCAAGCTTCCTCTCCACCCCCTCCCACCCCAGCATTATAGTCCTCGATCGAAGCCATTCATGTCTGCAATGGGCG CGCATGCCCCTTCACCAGTGCGCGTCCCACTACTCTATAGCATCGTGACTTCTAATCATAAAACCTCATTTGTTCTTGTCTTTCTTCTTGTATCCCTCCA TTTTGTTGCCTCTTTGGGACTGACGGACTCCGAAATCCTCCTCAAGTTCAAAGGTTCTTTAACGAACGCATCTGTGTTGTCGGACTGGAGTGATAAGACC ACGCCATGCACGAAAAATAATGCAACAAATTGGGTTGGTGTAATTTGTGTTGAAGGGTCCCTTTGGGGGTTACAACTTGAGAATATGGGATTGGCTGGCA AGATTGATGTGGAAATTCTAAAAAGTTTGCCAGATTTGAAAACATTCAGCATAATGAACAATAACTTCGATGGTCCCATGCCAGAGTTCAAGAAAATGGT TACATTGAGATCGATTTATTTGTCTAACAACCATTTCTCAGGGGTGATTCCACCGGATGCTTTTGATGGCATTTTGAAACTGAAGAAAGTGTATTTGGCA CAAAATGAGTTTACAGGTGCCATTCCTTCCTCATTGGTAGCCTTGCCTAAGCTTTTGGTTTTGAGGCTTGAAGGAAACCAATTCACTGGGAAGCTACCAG ATTTTACACACAATCTCCAATCATTCAGTGTGTCAAATAATGCTTTGGAGGGGCCAATCCCTACAGGCCTCAGTAAGATGGATTTGAGCTCCTTTTCAGG AAATAAAGGTCTGTGTGGACCACCATTAAATGAATGTAATACCACAGACAACGATGGCCATGACTCTGACTCCAAGAAAACCCCAGTGCTACTGATCGTG ATCCTTGCTGCAGCTGTGGGATTACTAATAGGTGCCATCGTTGCAGCTTTCTTATTCCTTCGTCGTCGTCAAAGACAAGCATCAGGCTCTATAGAAGCAC CTCCACCACCAATACCATCAAACCTCAAAAAGAAAACTGGTTTCAAGGAAGAAAACCAAAGCCCATCAAGCTCACCGGACCACTCGGTAGGGAGCAGGAA GGGTGAAGGTCCAAAGCTGTCCTTTGTGAGGGATGATAGAGAAAAGTTTGATTTGCCAGACTTGTTAAAGGCCTCGGCTGAGATATTAGGAAGTGGTTGC TTTGGGTCCTCATACAAAGCAGCACTTAGCTCTGGGACAATGATGGTGGTTAAGAGGTTTAAGCAGATGAATAATGTAGGGAAAGAAGAGTTTCAAGAGC ATATGAGGAGGCTAGGGAGATTGAAGCACTCTAACTTACTTCCTCTTGTGGCGTACTATTATAGGAAGGAAGAGAAGCTCTTGATTACCGACTTTGTTGA GAAAGGCAGCCTAGCTGCTCATCTTCATGGTCATCAAGCTCTAGGTCAACCAAGCCTTGGTTGGCCAAGCAGATTGAAGATTGTTAAAGGAGTAGCCAGG GGTCTTGCATACCTCTACAAAGACCTTCCCAACATCATTGCTGCCCACGGCCACCTCAAATCCTCCAACGTTCTTCTCACTCAATCCAACGAGCCAATGC TTACTGATTATGGACTAGTTCCCGTTATCAACCAAGAGAATGCTCAAGAACTCATGGTAGCCTACAAGTCCCCTGAATACTTGCATCATGGCCGGATTAC CAAGAAGACAGATGTCTGGAGTCTTGGGATATTGATAGTTGAGATCTTAACAGGAAAGTTGCCAGCAAACTTCGTGCCACAAGGCAAAGGAAGTGAGCAG CAAGATTTGGCAAGTTGGGTCAATTCTGTTCCTTATGAAGAGTGGATTAATGTGGTGCTCGATAAGGATATGACTAACGTGTCAACAAAACCCAATGGTG GTGGTGAAAGTGAGGTGATGAAGCTATTGAAGATTGGTTTGAGTTGTTGCGAAGCCGACGTGGAGAAGAGGTTAGACTTGAAGGAAGCTGTTGAGAGGAT TGAAGAAATAAAAGAGAAAGATAGTGATGATGATTTTTTCTCCTCATATGCCAGTGAAGGGGATATGAAATCTTCAAGAGGGAAGTCTGATGAATTCACA TTCTCTTAA
AA sequence Show only first row Show all	>Potri.018G147300.1 pacid=42800668 polypeptide=Potri.018G147300.1.p locus=Potri.018G147300 ID=Potri.018G147300.1.v4.1 annot-version=v4.1 MPSKLLHLPKLPLHPLPPQHYSPRSKPFMSAMGAHAPSPVRVPLLYSIVTSNHKTSFVLVFLLVSLHFVASLGLTDSEILLKFKGSLTNASVLSDWSDKT TPCTKNNATNWVGVICVEGSLWGLQLENMGLAGKIDVEILKSLPDLKTFSIMNNNFDGPMPEFKKMVTLRSIYLSNNHFSGVIPPDAFDGILKLKKVYLA QNEFTGAIPSSLVALPKLLVLRLEGNQFTGKLPDFTHNLQSFSVSNNALEGPIPTGLSKMDLSSFSGNKGLCGPPLNECNTTDNDGHDSDSKKTPVLLIV ILAAAVGLLIGAIVAAFLFLRRRQRQASGSIEAPPPPIPSNLKKKTGFKEENQSPSSSPDHSVGSRKGEGPKLSFVRDDREKFDLPDLLKASAEILGSGC FGSSYKAALSSGTMMVVKRFKQMNNVGKEEFQEHMRRLGRLKHSNLLPLVAYYYRKEEKLLITDFVEKGSLAAHLHGHQALGQPSLGWPSRLKIVKGVAR GLAYLYKDLPNIIAAHGHLKSSNVLLTQSNEPMLTDYGLVPVINQENAQELMVAYKSPEYLHHGRITKKTDVWSLGILIVEILTGKLPANFVPQGKGSEQ QDLASWVNSVPYEEWINVVLDKDMTNVSTKPNGGGESEVMKLLKIGLSCCEADVEKRLDLKEAVERIEEIKEKDSDDDFFSSYASEGDMKSSRGKSDEFT FS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G35390			Leucine-rich repeat protein ki...		Potri.018G147300 [exp]	0	1
AT2G24350			RNA binding (RRM/RBD/RNP motif...		Potri.012G145100 [exp]	2.44	0.9177
AT2G19170		SLP3	subtilisin-like serine proteas...		Potri.001G151100 [exp]	14.24	0.8952
AT4G17565			F-box family protein with a do...		Potri.004G134900 [exp]	14.49	0.8987
AT3G10030	Trihelix		aspartate/glutamate/uridylate ...		Potri.006G117300 [exp]	21.54	0.8504
AT4G30880			Bifunctional inhibitor/lipid-t...		Potri.009G048900 [exp]	24.18	0.8967
AT2G05920			Subtilase family protein (.1)		Potri.001G113533 [exp]	30.16	0.8967
AT2G24350			RNA binding (RRM/RBD/RNP motif...		Potri.012G145050 [exp]	31.32	0.7868
AT3G04280		ARR22	response regulator 22 (.1.2.3)		Potri.003G177300 [exp]	32.24	0.8967
AT1G32583			unknown protein		Potri.010G145501 [exp]	35.14	0.8967
					Potri.014G045150 [exp]	36.94	0.8967

Compare expression of checked genes

Potri.018G147300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.