Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G35400 488 / 1e-171 Pseudouridine synthase family protein (.1.2) AT3G06950 63 / 9e-11 Pseudouridine synthase family protein (.1) AT1G20370 62 / 5e-10 Pseudouridine synthase family protein (.1) AT1G76120 57 / 8e-09 Pseudouridine synthase family protein (.1.2) AT1G09800 45 / 5e-05 Pseudouridine synthase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G206200 [exp] 67 / 8e-12 AT3G06950 452 / 8e-161 Pseudouridine synthase family protein (.1) Potri.005G247000 [exp] 55 / 6e-08 AT1G20370 560 / 0.0 Pseudouridine synthase family protein (.1) Potri.002G014400 [exp] 55 / 6e-08 AT1G20370 562 / 0.0 Pseudouridine synthase family protein (.1) Potri.003G008500 [exp] 54 / 9e-08 AT1G09800 458 / 5e-162 Pseudouridine synthase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022949 [exp] 543 / 0 AT5G35400 489 / 2e-172 Pseudouridine synthase family protein (.1.2) Lus10027594 [exp] 518 / 0 AT5G35400 492 / 1e-173 Pseudouridine synthase family protein (.1.2) Lus10039480 [exp] 64 / 1e-10 AT3G06950 411 / 6e-144 Pseudouridine synthase family protein (.1) Lus10021231 [exp] 58 / 8e-09 AT1G76120 584 / 0.0 Pseudouridine synthase family protein (.1.2) Lus10005641 [exp] 58 / 1e-08 AT1G20370 588 / 0.0 Pseudouridine synthase family protein (.1) Lus10037366 [exp] 48 / 8e-06 AT1G09800 461 / 4e-163 Pseudouridine synthase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0649 [poplar] [flax] PseudoU_synth PF01416 [poplar] [flax] PseudoU_synth_1 tRNA pseudouridine synthase
Representative CDS sequence Show only first row Show all	>Potri.018G147400.2 pacid=42800977 polypeptide=Potri.018G147400.2.p locus=Potri.018G147400 ID=Potri.018G147400.2.v4.1 annot-version=v4.1 ATGTTAAAGACTTCCCTTCAGACACTGAAATCACTTCCAATCACTACAAAACAACAGACTCGAAGATTTACTAAAAACTCAGTGGTAATGGAAGCTCAAA ACGACAAAGTCTATGTCCAATATAACCACACTGATTCCTGCAAGTTTTCAAGGTGGACTGCCAGGGAGAGCTTTCAATTCATGCATGCAAGGCCTTGGCA AGAAGTGGTTGATTTTTACTCCAAAAGTGTTAATGGGCAATTGTCATTGTTGGAATTGTTTGGAACTCAGGCACATGATGTTCATTGTGATGATAAAATT GAAGAGGTTTCTAATGAAACTGGATTATTAGAGGGTGTTTCAAATGTAGATAAGTCTGGGAGGTGGGCAAGGGTAACATTCAAGATTGTGCTTTCATATC ATGGAGGTTCATTTGATGGTTGGCAAAAGCAGCCTGGTTTGAATACCGTTCAAGGCTTAGTGGAAAAGTCTCTTGGAAGATTTGTTGATGAGAAGAAAGC TCAACAGCTAAAAGAACAATGTAAGCCATTAGAAGGCTGTGCTAGTGTTGCTGGGCGCACTGACAAAGGAGTGTCAGCTCTTCAACAAGTTTGTTCTTTC TATACTTGGAGAAAAGATGTTAAGCCTCATGAAATTGAAGATGCCATCAATGATGTGGCACCGGGAAAAGTCAGGGTTGAATCCATTTCTGAGGTTTCAC GTGCATTCCATCCTAATTTTTCTGCCAAATGGAGGCGCTATTTGTATATATTTCCTTTAAATGATGGAGAAAATAGGGAAGAGATTGAGGGTGAGGGGGG TATTGAAAATTTTAGTTCTCATGAAAATTGTGAAAAGCAAAGAAATGAATGTGGTGAACTGGCCAGTGAGGAGAATGTTGAAAATTCAATAATCAGTGAC GAGGATGAACTTCAAGGTGCAAAGAAACCTAGGAGTTTCAGTGTATGCAGGGTTAATCAGCTTTTACAACAACTAGAAGGGAAGTTATTATCCTACAAAA TGTTTGCACGTGATACCAAAGCTTCGAGGAATGTGGGTCCTCCAACAGAATGCTTTTTATATCATGCTCGAGCCACGGAAACCAGATTGCCTTCTCCTGA TCATGAGAAAGGGATAAGGGTCATGTGTGTTGAGCTCATTGCTAATCGATTCCTACGCAAGATGGTTCGGGTTCTTGTGGCAACCTCGGTAAGGGAAGCA GCTGCAGGTGCACAAGAGGATGCACTGCTAAAGCTGATGGATGCTACATGCAGACGTGCAACTGCTCCACCTGCACCCCCAGACGGCCTATGTCTTGTTG ATGTAGGATATACTGAGTTTGACCCACGAAACTGCCTCATTCCCTAG
AA sequence Show only first row Show all	>Potri.018G147400.2 pacid=42800977 polypeptide=Potri.018G147400.2.p locus=Potri.018G147400 ID=Potri.018G147400.2.v4.1 annot-version=v4.1 MLKTSLQTLKSLPITTKQQTRRFTKNSVVMEAQNDKVYVQYNHTDSCKFSRWTARESFQFMHARPWQEVVDFYSKSVNGQLSLLELFGTQAHDVHCDDKI EEVSNETGLLEGVSNVDKSGRWARVTFKIVLSYHGGSFDGWQKQPGLNTVQGLVEKSLGRFVDEKKAQQLKEQCKPLEGCASVAGRTDKGVSALQQVCSF YTWRKDVKPHEIEDAINDVAPGKVRVESISEVSRAFHPNFSAKWRRYLYIFPLNDGENREEIEGEGGIENFSSHENCEKQRNECGELASEENVENSIISD EDELQGAKKPRSFSVCRVNQLLQQLEGKLLSYKMFARDTKASRNVGPPTECFLYHARATETRLPSPDHEKGIRVMCVELIANRFLRKMVRVLVATSVREA AAGAQEDALLKLMDATCRRATAPPAPPDGLCLVDVGYTEFDPRNCLIP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G35400			Pseudouridine synthase family ...		Potri.018G147400 [exp]	0	1
AT5G24810			ABC1 family protein (.1.2)		Potri.006G276600 [exp]	10.04	0.8991
AT2G07680		ATMRP11, ABCC13	ATP-binding cassette C13, mult...		Potri.003G182601 [exp]	31.41	0.8473
AT3G22400		ATLOX5, LOX5	Arabidopsis thaliana lipoxygen...		Potri.008G151500 [exp]	32.24	0.8723	LOX1.8
AT3G14470			NB-ARC domain-containing disea...		Potri.003G201800 [exp]	35.83	0.8704
AT3G56970	bHLH	ORG2, bHLH038	OBP3-RESPONSIVE GENE 3, basic ...		Potri.006G037200 [exp]	37.70	0.8153
AT5G06060			NAD(P)-binding Rossmann-fold s...		Potri.010G199700 [exp]	40.80	0.8509
AT2G15790		CYP40, SQN	SQUINT, CYCLOPHILIN 40, peptid...		Potri.004G144300 [exp]	45.51	0.8448	SQN.2
AT3G63510			FMN-linked oxidoreductases sup...		Potri.009G059900 [exp]	46.88	0.8255
AT1G02120		VAD1	VASCULAR ASSOCIATED DEATH1, GR...		Potri.002G137800 [exp]	51.91	0.8138
AT2G06990		HEN2	hua enhancer 2, RNA helicase, ...		Potri.006G078000 [exp]	66.73	0.8122	HEN2.1

Compare expression of checked genes

Potri.018G147400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.