Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10310 149 / 4e-43 ATHKT1, HKT1 high-affinity K+ transporter 1, high-affinity K+ transporter 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G132200 [exp] 192 / 3e-59 AT4G10310 413 / 9e-140 high-affinity K+ transporter 1, high-affinity K+ transporter 1 (.1) Potri.001G063500 [exp] 0 / 1 AT1G58190 71 / 8e-15 receptor like protein 9 (.1.2) Potri.018G145520 [exp] 0 / 1 AT1G54470 67 / 1e-13 resistance to Peronospora parasitica 27, RNI-like superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030616 [exp] 194 / 7e-60 AT4G10310 399 / 4e-134 high-affinity K+ transporter 1, high-affinity K+ transporter 1 (.1) Lus10040598 [exp] 175 / 2e-52 AT4G10310 374 / 3e-124 high-affinity K+ transporter 1, high-affinity K+ transporter 1 (.1) Lus10030872 [exp] 163 / 6e-48 AT4G10310 390 / 2e-130 high-affinity K+ transporter 1, high-affinity K+ transporter 1 (.1) Lus10026948 [exp] 75 / 6e-16 AT4G10310 306 / 5e-99 high-affinity K+ transporter 1, high-affinity K+ transporter 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0030 [poplar] [flax] Ion_channel PF02386 [poplar] [flax] TrkH Cation transport protein
Representative CDS sequence Show only first row Show all	>Potri.018G147501.2 pacid=42801265 polypeptide=Potri.018G147501.2.p locus=Potri.018G147501 ID=Potri.018G147501.2.v4.1 annot-version=v4.1 ATGCCTCTTTGTTTCTTCCTTTCCAAGAACTCAACGCTCTTTACTTTGTCAGATAATCGTATAGCTGGTTGGGTTAAGAACAAATTAAGGTATCTTCCTC CTTATACTTCTTTCCTCCCAATAAAAGATGACGAAGAAATATATAAGAAGAAAAGAAACAGAAGGGGAAAGCTTTTGGAGAATATACTGTTCTCTCAACT ATCATATTTAGCTATTTTCATCATCCTTGTATGCATCACAGAGAGGCAAAAACTGAAGGAAGATCCTCTCAATTTCAATGTTTTGAATATTGTGGTTGAA GTAGTCAGTGCATATGGAAGTGTAGGGTTTACAACAGGCTACAGTTGTGACAGGCAAACACAACCTAATAGTAATTGTGTGAACAAATTTTATGGATTCT CAGGGAAATGGAGTGATGAGGGGAAGATTATTCTCATAGTGGTGATGGTGTTTGGAAGACTTAAGAAGTTCAATATGGATGGTGGCAGAGCTTGGAAACT CTTGTGA
AA sequence Show only first row Show all	>Potri.018G147501.2 pacid=42801265 polypeptide=Potri.018G147501.2.p locus=Potri.018G147501 ID=Potri.018G147501.2.v4.1 annot-version=v4.1 MPLCFFLSKNSTLFTLSDNRIAGWVKNKLRYLPPYTSFLPIKDDEEIYKKKRNRRGKLLENILFSQLSYLAIFIILVCITERQKLKEDPLNFNVLNIVVE VVSAYGSVGFTTGYSCDRQTQPNSNCVNKFYGFSGKWSDEGKIILIVVMVFGRLKKFNMDGGRAWKLL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G10310		ATHKT1, HKT1	high-affinity K+ transporter 1...		Potri.018G147501 [exp]	0	1
AT5G54160		ATOMT1	O-methyltransferase 1 (.1)		Potri.016G101600 [exp]	15.87	0.9543
AT2G29110		ATGLR2.8	glutamate receptor 2.8 (.1)		Potri.011G063050 [exp]	21.21	0.9528
AT5G08350			GRAM domain-containing protein...		Potri.004G068000 [exp]	22.64	0.9494
AT5G51920			Pyridoxal phosphate (PLP)-depe...		Potri.003G120500 [exp]	32.09	0.9457
AT1G16260			Wall-associated kinase family ...		Potri.001G039200 [exp]	33.04	0.9494
AT3G16510			Calcium-dependent lipid-bindin...		Potri.008G209800 [exp]	37.81	0.9490	SRC2.4
AT3G54420		ATCHITIV, CHIV,...	CHITINASE CLASS IV, homolog of...		Potri.019G093700 [exp]	42.21	0.9482	PR3.2
AT5G04500			glycosyltransferase family pro...		Potri.010G232700 [exp]	50.79	0.9417
AT5G48380		BIR1	BAK1-interacting receptor-like...		Potri.017G003550 [exp]	56.18	0.9457
					Potri.004G206700 [exp]	56.55	0.9444

Compare expression of checked genes

Potri.018G147501 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.