Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G04940 697 / 0 transducin family protein / WD-40 repeat family protein (.1) AT1G61210 64 / 1e-10 DWA3 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G11160 63 / 2e-10 Transducin/WD40 repeat-like superfamily protein (.1) AT5G23430 59 / 4e-09 Transducin/WD40 repeat-like superfamily protein (.1.2) AT4G34380 50 / 2e-06 Transducin/WD40 repeat-like superfamily protein (.1) AT3G21540 44 / 0.0002 transducin family protein / WD-40 repeat family protein (.1) AT4G32990 42 / 0.0007 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G078900 [exp] 753 / 0 AT4G04940 1394 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Potri.011G045500 [exp] 58 / 1e-08 AT1G61210 723 / 0.0 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.010G255400 [exp] 54 / 1e-07 AT5G08390 927 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.008G002300 [exp] 53 / 4e-07 AT5G08390 1006 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.009G115300 [exp] 49 / 5e-06 AT4G34460 624 / 0.0 ERECTA-LIKE 4, GTP binding protein beta 1 (.1.2.3.4) Potri.004G153700 [exp] 45 / 9e-05 AT4G34460 624 / 0.0 ERECTA-LIKE 4, GTP binding protein beta 1 (.1.2.3.4) Potri.005G148500 [exp] 43 / 0.0003 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G009500 [exp] 42 / 0.0005 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036625 [exp] 696 / 0 AT4G04940 1396 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Lus10035842 [exp] 460 / 4e-154 AT4G04940 1137 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Lus10018458 [exp] 67 / 2e-11 AT1G11160 668 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10011224 [exp] 67 / 2e-11 AT1G11160 665 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10039636 [exp] 49 / 5e-06 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10042325 [exp] 46 / 3e-05 AT4G34460 598 / 0.0 ERECTA-LIKE 4, GTP binding protein beta 1 (.1.2.3.4) Lus10026337 [exp] 46 / 5e-05 AT4G34460 570 / 0.0 ERECTA-LIKE 4, GTP binding protein beta 1 (.1.2.3.4) Lus10001924 [exp] 44 / 0.0003 AT1G15750 1006 / 0.0 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4) Lus10026837 [exp] 44 / 0.0004 AT5G13480 759 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10020214 [exp] 43 / 0.0004 AT5G13480 738 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Potri.018G148066.1 pacid=42801890 polypeptide=Potri.018G148066.1.p locus=Potri.018G148066 ID=Potri.018G148066.1.v4.1 annot-version=v4.1 ATGGGCATCTTCGAACCGTTTAGAGCAATCGGATACATAACGAGCGGCGTTCCCTTCTCCGTTCAAAGACTAGGCACTGAAGCCTTCGTTACAGTTAGCG TAGGCAAAGCTTTTCAAGTTTACAACTGCGCCAAGCTTACTTTAGTCCTCGCCAGCCCTCAACTCCCTCACAAAATCCGTGCTTTAGCATCTTATCGTGA CTTCACCTTCGTTGCCTTCGGAACCCACATTGCCGTCTTCAAGCGCGCCCACCAGGTGGCGAGGTGGAGTGGGCATAGTGGGAAGGTGAATTCGTTGATG GTATTTGGGGATCATGTGATAAGTGTTGATGTTGAGGGTCATTTGTTTATTTGGGGGTTTAAAGGGGTGGCAGGGGATATTGTGCCGGTTGGGCATATAA TGTTGGGGGAGAAGTGTACGCCCACTTGTGTAATGCATTCGGATACTTATTTGAACAAGGTTTTGATTGGGAGTCAGGAGGGGGGTTTGCAGCTTTGGAA TGTGAGTACGAAGAAAATGCTGCATGAGTTTAAAGGGTGGGGTTCGTCGGTCAGTAGTTGTGTGTCATCGCCAGCATTGGATGTTGTTGCGGTTGGTTGT GCTGATGGGAAGATTCATGTGCATAATATTCGATATGATGAAGAGGTGGTTACGTTTTCGCATTCCACGCGCGGTGCTGTGACTGCATTGTCTTTCAGTA CAGATGGGCAGTCACTTTTAGCTTCAGGAGGTTCTTCTGGTGTTATAAGCATTTGGAATCTGGAGAAAAGAAAACTACAATCAGTTGTAAGAGAGGCTCA TGATAGTTCGATAATTTCATTGCACTTTTTGGCTAATGAGCCTGTGCTGATGAGTTCATCAGCAGACAACTCTATTAAGATGTGGGTTTTTGATACAACT GATGGCGATCCTCGACTTTTACGCTTTAGAAGTGGACACAGTGCTCCTCCACTTTGCATAAGGTTCTATGCAAATGGGAGACACATTCTATCTGCTGGTC AGGATCGTGCCTTTCGTCTTTTCTCTGTCATACAGGACCAACAAAGTAGAGAGCTCTCTCAGCATCATGTATCCAAACGAGCCAAGAAACTTCGGGTGAA GGAAGAAGAACTGAAATTGAAGCCTGTCATTGCCTTTGACTGTGCTGAAATTCGGGAGCGGGATTGGTGCAACGTGGTAACTTGTCATATTGATACTGCA CAAGCATATGTGTGGACGCTTCAAAATTTTGTCATTGGGGAGCATATCCTGAGACCATGCCCAGAAAAGCCAACACCTGTTAAGGCATGCACCATTAGTG CATGTGGCAACTATCCTAGGAACGGCAGGTGGTTGGATAGAGCGATTCAACCTTCAATCAGGAATTAG
AA sequence Show only first row Show all	>Potri.018G148066.1 pacid=42801890 polypeptide=Potri.018G148066.1.p locus=Potri.018G148066 ID=Potri.018G148066.1.v4.1 annot-version=v4.1 MGIFEPFRAIGYITSGVPFSVQRLGTEAFVTVSVGKAFQVYNCAKLTLVLASPQLPHKIRALASYRDFTFVAFGTHIAVFKRAHQVARWSGHSGKVNSLM VFGDHVISVDVEGHLFIWGFKGVAGDIVPVGHIMLGEKCTPTCVMHSDTYLNKVLIGSQEGGLQLWNVSTKKMLHEFKGWGSSVSSCVSSPALDVVAVGC ADGKIHVHNIRYDEEVVTFSHSTRGAVTALSFSTDGQSLLASGGSSGVISIWNLEKRKLQSVVREAHDSSIISLHFLANEPVLMSSSADNSIKMWVFDTT DGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQHHVSKRAKKLRVKEEELKLKPVIAFDCAEIRERDWCNVVTCHIDTA QAYVWTLQNFVIGEHILRPCPEKPTPVKACTISACGNYPRNGRWLDRAIQPSIRN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G04940			transducin family protein / WD...		Potri.018G148066 [exp]	0	1
AT5G22750		RAD5A, RAD5	DNA/RNA helicase protein (.1)		Potri.004G189400 [exp]	4.00	0.8506
AT5G53770			Nucleotidyltransferase family ...		Potri.001G400800 [exp]	5.19	0.8505
AT3G01720			unknown protein		Potri.001G336400 [exp]	10.95	0.7869
AT4G34310			alpha/beta-Hydrolases superfam...		Potri.014G034100 [exp]	12.12	0.8106
AT2G01480			O-fucosyltransferase family pr...		Potri.008G130600 [exp]	15.87	0.7870
AT4G21490		NDB3	NAD(P)H dehydrogenase B3 (.1)		Potri.011G042500 [exp]	18.97	0.7286
AT3G54460			SNF2 domain-containing protein...		Potri.003G197701 [exp]	19.23	0.7368
AT1G04210			Leucine-rich repeat protein ki...		Potri.008G158600 [exp]	21.67	0.8171
AT1G68990		MGP3	male gametophyte defective 3 (...		Potri.008G112800 [exp]	22.22	0.7665
AT3G63400			Cyclophilin-like peptidyl-prol...		Potri.002G047200 [exp]	28.93	0.7598

Compare expression of checked genes

Potri.018G148066 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.