Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G04940 442 / 1e-148 transducin family protein / WD-40 repeat family protein (.1) AT1G11160 46 / 5e-05 Transducin/WD40 repeat-like superfamily protein (.1) AT3G18140 44 / 5e-05 Transducin/WD40 repeat-like superfamily protein (.1.2) AT4G02730 44 / 0.0001 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT3G49660 44 / 0.0001 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT5G08390 44 / 0.0002 Transducin/WD40 repeat-like superfamily protein (.1) AT2G40360 44 / 0.0002 Transducin/WD40 repeat-like superfamily protein (.1) AT3G21540 43 / 0.0003 transducin family protein / WD-40 repeat family protein (.1) AT5G25150 43 / 0.0003 TAF5 TBP-associated factor 5 (.1) AT1G61210 43 / 0.0004 DWA3 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G078900 [exp] 620 / 0 AT4G04940 1394 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Potri.007G009500 [exp] 52 / 3e-07 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G148500 [exp] 50 / 1e-06 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.008G002300 [exp] 45 / 5e-05 AT5G08390 1006 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G148100 [exp] 45 / 5e-05 AT4G00090 577 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.016G052800 [exp] 44 / 9e-05 AT3G18140 563 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.011G045500 [exp] 44 / 0.0001 AT1G61210 723 / 0.0 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.010G255400 [exp] 44 / 0.0002 AT5G08390 927 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.004G222500 [exp] 44 / 0.0002 AT2G40360 959 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035842 [exp] 474 / 3e-161 AT4G04940 1137 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Lus10036625 [exp] 473 / 3e-160 AT4G04940 1396 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Lus10023107 [exp] 48 / 7e-06 AT2G40360 937 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10039636 [exp] 48 / 7e-06 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10003487 [exp] 47 / 1e-05 AT3G49660 489 / 6e-176 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10011471 [exp] 47 / 2e-05 AT2G40360 932 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10022855 [exp] 47 / 2e-05 AT2G20330 885 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10042333 [exp] 46 / 3e-05 AT3G18140 572 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10004167 [exp] 45 / 0.0001 AT2G41500 708 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10011224 [exp] 45 / 0.0001 AT1G11160 665 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat CL0186 [poplar] [flax] PF04192 [poplar] [flax] Utp21 Utp21 specific WD40 associated putative domain
Representative CDS sequence Show only first row Show all	>Potri.018G148132.1 pacid=42802163 polypeptide=Potri.018G148132.1.p locus=Potri.018G148132 ID=Potri.018G148132.1.v4.1 annot-version=v4.1 ATGGTTCGTAAATTTGAAGGTCATACTGATCGAATTACAGATTTATGTTTTAGTGAGGATGGGAAATGGCTTTTGTCATCCAGTATGGATGGAACTCTTA GAATTTGGGATGTCATCTTAGCAAGGCAAATAGATGCAGTTCATGTTGAGGTGTCTGTGACAGCATTGTCTTTGTCACCAAATATGGATGTGCTGGCAAC TACCCATGTTGATCAAAACGGGGTCTATTTGTGGGTTAATCAGTCAATGTTCTCCGGAGCTTCAAGGATTGATGCTTATGCTAGTGGGAAAGAAGTTGTG AATGTAAAATTGCCATCTTTAATTGCAGTTGAAGGTTCAAATGCTGAGAATGAGGATACTGACAAGTCCGTTGTGAAACACTCAGTATCCAAAGAAGCTT CTACTTTTCCAGCTTTCAGTCAGCAAATTCCAGTTCTTGTTACTCTCTCCCTGTTGCCTAAAAGCCAATGGCAGAGTTTGATCAACTTAGATATTATAAA GGTACGCAATAAACCAATTGAGCCTCCAAAGAAGCCCGAGAAGACTCCTTTCTTCCTGCCTTCAATTCCATCTCTATCTGGAGAAATATTATTTAAGCCC AGTGAGCCAGTGGATGGGGATGATAGTAAACCTGATGAAACGGAGAGTGATAGGAGAAAACTTGACATTCCACCAACTCAATTTTTGGAACTTCTTCAGT CTTCTTCAGAGATGAAAAATTTTTCAGCATTCACTGAATATATCAAAGGTCTATCTCCTTCAAATTTGGATATGGAACTTAGAATGTTTCAGATAATAGA TGATTATCAGGAAGAACTTGAAACGAGACCTGAGTTTATTTCAATCGAGCTGCTGCTAGACTATTTTATTCATGAGATATCCAGCAGAAACAATTTTGAG TTTGTACAGGCTGTCATAAGATTATTTTTGAAGATTCATGGCGAAACAATTAGGTGCAATCTAAAATTACAGGACAAGGCAAGGAAGCTTTTAGAGACTC AATGTTCAGTTTGGCAGGGGGTAGATAAATTGTTCCAAAGTGCTCGATGCATGGTCACTTTCCTTAGCAATTCACAGTTCTAA
AA sequence Show only first row Show all	>Potri.018G148132.1 pacid=42802163 polypeptide=Potri.018G148132.1.p locus=Potri.018G148132 ID=Potri.018G148132.1.v4.1 annot-version=v4.1 MVRKFEGHTDRITDLCFSEDGKWLLSSSMDGTLRIWDVILARQIDAVHVEVSVTALSLSPNMDVLATTHVDQNGVYLWVNQSMFSGASRIDAYASGKEVV NVKLPSLIAVEGSNAENEDTDKSVVKHSVSKEASTFPAFSQQIPVLVTLSLLPKSQWQSLINLDIIKVRNKPIEPPKKPEKTPFFLPSIPSLSGEILFKP SEPVDGDDSKPDETESDRRKLDIPPTQFLELLQSSSEMKNFSAFTEYIKGLSPSNLDMELRMFQIIDDYQEELETRPEFISIELLLDYFIHEISSRNNFE FVQAVIRLFLKIHGETIRCNLKLQDKARKLLETQCSVWQGVDKLFQSARCMVTFLSNSQF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G04940			transducin family protein / WD...		Potri.018G148132 [exp]	0	1
AT5G45160			Root hair defective 3 GTP-bind...		Potri.012G116000 [exp]	2.44	0.8982
AT5G27550			P-loop containing nucleoside t...		Potri.005G031801 [exp]	11.22	0.8751
					Potri.017G021796 [exp]	14.69	0.8570
AT3G07350			Protein of unknown function (D...		Potri.009G144600 [exp]	16.97	0.8669
AT3G53310	B3	REM20	AP2/B3-like transcriptional fa...		Potri.003G015900 [exp]	23.45	0.8975
					Potri.003G013400 [exp]	29.58	0.8497
AT3G53310	B3	REM20	AP2/B3-like transcriptional fa...		Potri.003G017566 [exp]	34.92	0.8834
AT5G05800			unknown protein		Potri.005G153700 [exp]	53.96	0.8284
AT5G27550			P-loop containing nucleoside t...		Potri.005G031850 [exp]	66.73	0.8009
AT1G05680		UGT74E2	Uridine diphosphate glycosyltr...		Potri.007G140700 [exp]	75.94	0.8527

Compare expression of checked genes

Potri.018G148132 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.