Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-CAS.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G07050 1298 / 0 CAS1 cycloartenol synthase 1 (.1) AT3G45130 979 / 0 LAS1 lanosterol synthase 1 (.1) AT1G78955 910 / 0 CAMS1 camelliol C synthase 1 (.1) AT1G78950 898 / 0 ATLUP3 Terpenoid cyclases family protein (.1) AT1G78960 896 / 0 ATLUP2 lupeol synthase 2 (.1) AT1G66960 849 / 0 ATLUP5 Terpenoid cyclases family protein (.1) AT1G78970 838 / 0 ATLUP1, LUP1 ARABIDOPSIS THALIANA LUPEOL SYNTHASE 1, lupeol synthase 1 (.1.2) AT5G36150 780 / 0 ATPEN3 putative pentacyclic triterpene synthase 3 (.1) AT1G78500 767 / 0 ATPEN6 Terpenoid cyclases family protein (.1) AT4G15340 752 / 0 04C11, ATPEN1 pentacyclic triterpene synthase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G079300 [exp] 1438 / 0 AT2G07050 1333 / 0.0 cycloartenol synthase 1 (.1) Potri.007G002200 [exp] 1218 / 0 AT2G07050 1186 / 0.0 cycloartenol synthase 1 (.1) Potri.006G079200 [exp] 1101 / 0 AT2G07050 1116 / 0.0 cycloartenol synthase 1 (.1) Potri.014G002400 [exp] 918 / 0 AT1G78950 1245 / 0.0 Terpenoid cyclases family protein (.1) Potri.007G002500 [exp] 909 / 0 AT1G78950 1244 / 0.0 Terpenoid cyclases family protein (.1) Potri.011G085000 [exp] 887 / 0 AT1G78955 932 / 0.0 camelliol C synthase 1 (.1) Potri.001G049100 [exp] 884 / 0 AT1G78955 1141 / 0.0 camelliol C synthase 1 (.1) Potri.004G132500 [exp] 874 / 0 AT1G78955 935 / 0.0 camelliol C synthase 1 (.1) Potri.007G002100 [exp] 866 / 0 AT1G78955 1074 / 0.0 camelliol C synthase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032146 [exp] 1313 / 0 AT2G07050 1346 / 0.0 cycloartenol synthase 1 (.1) Lus10014538 [exp] 1310 / 0 AT2G07050 1350 / 0.0 cycloartenol synthase 1 (.1) Lus10025684 [exp] 1142 / 0 AT2G07050 1198 / 0.0 cycloartenol synthase 1 (.1) Lus10013546 [exp] 860 / 0 AT1G78955 1081 / 0.0 camelliol C synthase 1 (.1) Lus10008544 [exp] 853 / 0 AT2G07050 890 / 0.0 cycloartenol synthase 1 (.1) Lus10016441 [exp] 834 / 0 AT1G78955 1035 / 0.0 camelliol C synthase 1 (.1) Lus10026079 [exp] 803 / 0 AT1G78955 1002 / 0.0 camelliol C synthase 1 (.1) Lus10033355 [exp] 787 / 0 AT1G78960 998 / 0.0 lupeol synthase 2 (.1) Lus10016439 [exp] 701 / 0 AT1G78960 874 / 0.0 lupeol synthase 2 (.1) Lus10016440 [exp] 671 / 0 AT1G78950 838 / 0.0 Terpenoid cyclases family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0059 [poplar] [flax] 6_Hairpin PF00432 [poplar] [flax] Prenyltrans Prenyltransferase and squalene oxidase repeat
Representative CDS sequence Show only first row Show all	>Potri.018G148800.8 pacid=42800777 polypeptide=Potri.018G148800.8.p locus=Potri.018G148800 ID=Potri.018G148800.8.v4.1 annot-version=v4.1 ATGTGGAGGTTAAAGATAGCAGCAGGAGGAAATCCATGGCTAAGAACGACGAATAATCATATCGGAAGACAGGTTTGGGAGTTCGATCCTACACTAACTC TATCTCCTCGAGAGATCGAAAATGCGCGTCGAAATTTTACGGAAAATAGGTTCCTATTCAAGCATAGTGCAGATCTAATCATGCGCATGCAGTTTGAGAA GGAGAATCCGGTGCCGGAAGTGTTGCCGCAAGTGAAGGTGAAGGAGAGCGAGGAGGTTACGGAGGAGGCGGTTGCTGCAACGTTGAAGAGAGCTTTGAAT TTTTATTCAAGTATACAAGCTCATGATGGACATTGGCCTGGTGATTATGGCGGTCCTATGTTTCTCTTGCCTGGCTTGGTGATTACTTTGTCAATTACGG GAGCATTGAATGCAGTGTTATCGGATGAACATAAAAAGGAGATGATCCGGTATCTCTACAATCACCAGAACAGAGATGGGGGGTGGGGTTTGCATATTGA GGGACCGAGTACAATGTTTGGTTCCGTGTTGAATTATGTTACTTTAAGGTTGCTGGGAGAAGGGCCGAATGATGGAGATGGGGCAATGGACAAGGGGCAT GATTGGATTCTGAATCATGGTAGTGCAACTATGATAACATCGTGGGGGAAAATGTGGCTTTCAGTACTTGGAGTGTTTGAGTGGTCTGGAAATAATCCAA TGCCCCCTGAGATGTGGCTTCTCCCTTATTTGCTCCCAGTCCATCCAGGAAGGATGTGGTGTCACTGCCGGATGGTCTATCTGCCTATGTCCTACTTATA TGGGAAGAGGTTTGTTGGCCCAATCACTCCAATAGTTTTATCTTTGCGAAAGGAGCTGTTCACTGTCCCATATCATGAAATAGACTGGAATCAAGCACGC AATCTGTGTGCTAAGGAGGACTTGTACTACCCTCACCCACTGGTGCAAGATGCACTATGGGCTTTACTTGACAAGGCTGCTGAACCAGTTTTAATGCATT GGCCTGGAAAAAAGTTGAGAGAACAGGCTCTTCATACTGCAATGGAGCACATGCACTATGAAGATGAAAATACTCGTTATATTTGCATAGGACCTGTAAA TAAGGTGTTAAATATGCTATGCTGTTGGGTGGAAGACCCTAACTCTGAAGCTTTCAAGTTGCATCTTCCTAGAATACAGGATTACCTCTGGCTTGCTGAA GATGGAATGAAAATGCAGGGTTACAATGGAAGTCAATTGTGGGACACTTCTTTTGCTGTTCAAGCAATTATTTCAACTAAGCTTGTGGAGGAATATGGTC CAACTTTAAGAAAAGCACATGCATATATTAAAAATTCACAGGTTTTGGAAGATTGCCCTGGAGATCTTAGTTTCTGGTATCGCCATATTTCCAAAGGTGC ATGGCCTTTCTCAACTGCAGATCATGGATGGCCCATCTCAGATTGCACAGCAGAAGGACTAAAAGCTGCTCTCTTATTATCAAAAATTACACCTGAGATT GTTGGGGAACCATTAGCTGCAAACCGATTTTATGATGCAGTAAATGTCATCCTCTCATTACAGAATGGGGATGGTGGCTTTGCGACATATGAGCTCACAA GATCTTACAGCTGGTTAGAGTTGATCAACCCTGCTGAAACTTTTGGCGACATTGTTATTGATTACCCATACGTTGAATGTACTTCAGCTGCAATTCAAGC TTTGGTTTCATTTAAGAAATTATATCCTGGACATCGGCAAGAAGAAATAGAAAGATGTATCAGAAAGGCAACTAAGTTCATTGAAAGTATACAGGAGAAG GATGGCTCATGGTATGGTTCATGGGGTGTTTGCTTCACCTATGGCACATGGTTTGGCATAAATGGACTGGTGGCTGCTGGAAAATTTTTTAATGATAACT CCAGTATCCGCAAAGCCTGTGATTTTCTGCTATCCAAACAATGTTCTTCTGGTGGCTGGGGAGAGAGTTATCTTTCATGTCAAAACAAGGTTTATTCAAA TCTTGAAGGGAACAAGACTCACGTGGTAAACACAGCATGGGCTATGTTGGCTCTCATTGAAGCTGGGCAGGCTGAGAGAGATCCAGAACCGTTGCACCGT GCAGCGAGGTCCTTGATAAATTCCCAAATGGAAAATGGAGATTTTCCGCAGCAGGAAATCATGGGAGTTTTCAACAGGAATTGTATGATAACATACGCTG CCTATAGGGACATTTTCCCCATTTGGGCATTGGGAGAATACCGGTGTCGGGTGCTGCAGGCTAAGGCTTCATAA
AA sequence Show only first row Show all	>Potri.018G148800.8 pacid=42800777 polypeptide=Potri.018G148800.8.p locus=Potri.018G148800 ID=Potri.018G148800.8.v4.1 annot-version=v4.1 MWRLKIAAGGNPWLRTTNNHIGRQVWEFDPTLTLSPREIENARRNFTENRFLFKHSADLIMRMQFEKENPVPEVLPQVKVKESEEVTEEAVAATLKRALN FYSSIQAHDGHWPGDYGGPMFLLPGLVITLSITGALNAVLSDEHKKEMIRYLYNHQNRDGGWGLHIEGPSTMFGSVLNYVTLRLLGEGPNDGDGAMDKGH DWILNHGSATMITSWGKMWLSVLGVFEWSGNNPMPPEMWLLPYLLPVHPGRMWCHCRMVYLPMSYLYGKRFVGPITPIVLSLRKELFTVPYHEIDWNQAR NLCAKEDLYYPHPLVQDALWALLDKAAEPVLMHWPGKKLREQALHTAMEHMHYEDENTRYICIGPVNKVLNMLCCWVEDPNSEAFKLHLPRIQDYLWLAE DGMKMQGYNGSQLWDTSFAVQAIISTKLVEEYGPTLRKAHAYIKNSQVLEDCPGDLSFWYRHISKGAWPFSTADHGWPISDCTAEGLKAALLLSKITPEI VGEPLAANRFYDAVNVILSLQNGDGGFATYELTRSYSWLELINPAETFGDIVIDYPYVECTSAAIQALVSFKKLYPGHRQEEIERCIRKATKFIESIQEK DGSWYGSWGVCFTYGTWFGINGLVAAGKFFNDNSSIRKACDFLLSKQCSSGGWGESYLSCQNKVYSNLEGNKTHVVNTAWAMLALIEAGQAERDPEPLHR AARSLINSQMENGDFPQQEIMGVFNRNCMITYAAYRDIFPIWALGEYRCRVLQAKAS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G07050		CAS1	cycloartenol synthase 1 (.1)		Potri.018G148800 [exp]	0	1	Pt-CAS.2
AT4G20900		TDM1, MS5	MALE-STERILE 5, Tetratricopept...		Potri.011G163500 [exp]	14.73	0.8628
AT3G06840			unknown protein		Potri.010G010600 [exp]	18.43	0.8598
AT4G13710			Pectin lyase-like superfamily ...		Potri.001G052300 [exp]	21.44	0.8437
AT5G01420			Glutaredoxin family protein (....		Potri.008G016100 [exp]	25.69	0.8597
AT1G63100	GRAS		GRAS family transcription fact...		Potri.003G122400 [exp]	27.71	0.8591	GRAS19
AT5G44560		VPS2.2	SNF7 family protein (.1.2)		Potri.001G442500 [exp]	39.33	0.8541
AT5G63180			Pectin lyase-like superfamily ...		Potri.015G087800 [exp]	43.78	0.8401
AT1G78430		RIP2	ROP interactive partner 2 (.1)		Potri.001G377900 [exp]	45.50	0.8437
AT2G16270			unknown protein		Potri.001G289100 [exp]	49.65	0.8507
AT1G20070			unknown protein		Potri.005G241800 [exp]	49.95	0.8494

Compare expression of checked genes

Potri.018G148800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.