Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G07180 565 / 0 Protein kinase superfamily protein (.1.2) AT5G01020 437 / 3e-150 Protein kinase superfamily protein (.1) AT5G56460 395 / 1e-133 Protein kinase superfamily protein (.1) AT2G05940 390 / 7e-131 RIPK RPM1-induced protein kinase, Protein kinase superfamily protein (.1) AT2G28930 387 / 1e-130 APK1B protein kinase 1B (.1.2.3) AT1G07570 380 / 6e-128 APK1A Protein kinase superfamily protein (.1.2.3) AT5G02290 374 / 9e-126 NAK Protein kinase superfamily protein (.1.2) AT2G26290 372 / 2e-124 ARSK1 root-specific kinase 1 (.1) AT2G39660 371 / 2e-124 BIK1 botrytis-induced kinase1 (.1) AT3G55450 370 / 2e-124 PBL1 PBS1-like 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G079600 [exp] 799 / 0 AT2G07180 539 / 0.0 Protein kinase superfamily protein (.1.2) Potri.016G143200 [exp] 437 / 1e-149 AT5G01020 655 / 0.0 Protein kinase superfamily protein (.1) Potri.006G113600 [exp] 435 / 3e-149 AT5G01020 664 / 0.0 Protein kinase superfamily protein (.1) Potri.006G219300 [exp] 400 / 4e-135 AT2G05940 536 / 0.0 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Potri.001G002300 [exp] 396 / 1e-134 AT5G56460 608 / 0.0 Protein kinase superfamily protein (.1) Potri.009G031300 [exp] 394 / 2e-133 AT2G28930 603 / 0.0 protein kinase 1B (.1.2.3) Potri.001G240400 [exp] 392 / 2e-132 AT1G07570 590 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.006G141500 [exp] 391 / 1e-131 AT2G05940 638 / 0.0 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Potri.010G203400 [exp] 388 / 8e-131 AT2G28930 540 / 0.0 protein kinase 1B (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040588 [exp] 625 / 0 AT2G07180 582 / 0.0 Protein kinase superfamily protein (.1.2) Lus10027589 [exp] 546 / 0 AT2G07180 545 / 0.0 Protein kinase superfamily protein (.1.2) Lus10008546 [exp] 534 / 0 AT2G07180 534 / 0.0 Protein kinase superfamily protein (.1.2) Lus10036762 [exp] 425 / 1e-144 AT5G01020 672 / 0.0 Protein kinase superfamily protein (.1) Lus10023794 [exp] 391 / 6e-133 AT5G02290 543 / 0.0 Protein kinase superfamily protein (.1.2) Lus10024391 [exp] 387 / 1e-130 AT5G02290 563 / 0.0 Protein kinase superfamily protein (.1.2) Lus10010835 [exp] 385 / 6e-130 AT5G02290 561 / 0.0 Protein kinase superfamily protein (.1.2) Lus10030668 [exp] 386 / 6e-129 AT5G15080 723 / 0.0 Protein kinase superfamily protein (.1) Lus10005255 [exp] 386 / 6e-129 AT5G15080 720 / 0.0 Protein kinase superfamily protein (.1) Lus10034897 [exp] 385 / 2e-128 AT2G05940 636 / 0.0 RPM1-induced protein kinase, Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.018G149100.4 pacid=42800573 polypeptide=Potri.018G149100.4.p locus=Potri.018G149100 ID=Potri.018G149100.4.v4.1 annot-version=v4.1 ATGGTGAATGTGAAGATGAAAAGCAATCATAAATCAAGATTTGGTCTAAAGTCAAAATTAATGGGGATTTGTTTCAGTGTTGATGGCGACAAAATCCCAC AAGAACAACGGCAGTTATCTTCTAAGGGAAACCAAGCAGGGCATGTCTATGATCAGTCTCCAAGTGGACCAACTGAGCCGGATTTGGTTGAGACCAAAAG AGCAACCAGCACGCCTTCAGTTCCCAAGAATGTTACAGATCTCCGTAATAGTCCTGGTTATGGTAACGTTGATATCTTCACATACGAGGAAATGAAGCTG GCCACAAAGCAATTCCGGCCAGATTATATTCTTGGTGAGGGTGGATTCGGAGTTGTTTACAAAGGAGTCATAGATGAGAGCGTAAGGACTCTTTACAAGA CCACATATGTTGCAATCAAGGAGCTTAATCCTGATGGGTTACAAGGTGACCGAGAATGGCTGGCAGAAGTTAACTATTTAGGTCAACTCAGTCACTCAAA TCTTGTGAAGCTCATTGGGTATTGCTGTGAAGATGAGCACAGGCTGTTGGTCTATGAATACATGGCAAGCGGGAGCCTTGAAAAGCATCTGTTTCGGAGA GTGGGTTGTACTTTGACATGGTCAAAAAGAATGAAGATTGCTTTAGATGCTGCAAAAGGACTTGCTTTTCTTCATGGTGCAGAAAGATCTATCATATACC GTGATTTCAAGACATCAAACATCTTGCTGGATTCGGATTTTAATGCAAAACTTTCAGATTTTGGACTTGCTAAAGATGGACCGATGGGAGATCAGACTCA TGTGTCAACACGTGTTATGGGGACATATGGATACGCTGCTCCTGAATATGTAATGACTGGGCATCTAACTGCTAGAAGTGATGTTTATGGGTTTGGGGTA GTACTACTTGAGTTGCTTCTTGGAAGGAGAGCTTTGGACAAGAGCAGGCCTAGCCGAGAACACAACCTTGTTGAGTGGGCTCGCCCTCTCTTGAACCACA ATAAGAAGGTTCTGAGAATCTTAGATCCCAGAATGGAAGGGCAGTACTCATCCAGAATTGCAATGAAAGTGGCTAACTTGGCATACCAATGCCTTAGCCA AAATCCGAAAGGTAGACCACTCATGAACCAGGTGGTTGAACTACTTGAGAGTGTGCAGTCCAAGGATGAAGAAGCCATGTTTGAAACCACTGGAAGAGGT GTAACCCTTTATGAAGACCCAAGGCGCCCTCCTCACACTCCTGGGAAGGAAAGAAACCAAGCTAGAAATCATGATTATAGAGAAGGGGAACCTTCTCCTT ACTCTTCTTCTGAGAAGCAAAGAAACCGAACTAGAAGTCATGATCACAGAAAAGAGGAACCTTCTCCTCACTCTCCTTCTGAGAAGCAAAGAAACCGAAC TAGAAGTCAAGATCATAGAGAAGAGGAACCTTCTCGCACTCCTTTGAAGGAAAGAGATCAAACTGGAAGTCATGAACGCAGGGAAGGGGAACCTTTTCCT CACACTCATGAGGAGGAAAGAACCCAAACTAGAAGTCATGATCATAGAGAAGGGGAACCTCAAAGGAGGAGCAAACCTGCAAATGCAAGGAGCAGAACTG AGCCCCTTACTGAGAGTGATCTGTATAGCCCTCCTGATTTTAGAATCTCAAGTCCTATGAGATAA
AA sequence Show only first row Show all	>Potri.018G149100.4 pacid=42800573 polypeptide=Potri.018G149100.4.p locus=Potri.018G149100 ID=Potri.018G149100.4.v4.1 annot-version=v4.1 MVNVKMKSNHKSRFGLKSKLMGICFSVDGDKIPQEQRQLSSKGNQAGHVYDQSPSGPTEPDLVETKRATSTPSVPKNVTDLRNSPGYGNVDIFTYEEMKL ATKQFRPDYILGEGGFGVVYKGVIDESVRTLYKTTYVAIKELNPDGLQGDREWLAEVNYLGQLSHSNLVKLIGYCCEDEHRLLVYEYMASGSLEKHLFRR VGCTLTWSKRMKIALDAAKGLAFLHGAERSIIYRDFKTSNILLDSDFNAKLSDFGLAKDGPMGDQTHVSTRVMGTYGYAAPEYVMTGHLTARSDVYGFGV VLLELLLGRRALDKSRPSREHNLVEWARPLLNHNKKVLRILDPRMEGQYSSRIAMKVANLAYQCLSQNPKGRPLMNQVVELLESVQSKDEEAMFETTGRG VTLYEDPRRPPHTPGKERNQARNHDYREGEPSPYSSSEKQRNRTRSHDHRKEEPSPHSPSEKQRNRTRSQDHREEEPSRTPLKERDQTGSHERREGEPFP HTHEEERTQTRSHDHREGEPQRRSKPANARSRTEPLTESDLYSPPDFRISSPMR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G07180			Protein kinase superfamily pro...		Potri.018G149100 [exp]	0	1
AT5G13690		NAGLU, CYL1	N-ACETYL-GLUCOSAMINIDASE, CYCL...		Potri.009G058100 [exp]	3.16	0.6341
AT2G28940			Protein kinase superfamily pro...		Potri.009G031500 [exp]	8.24	0.5921
AT1G15260			unknown protein		Potri.003G053600 [exp]	12.96	0.5689
AT5G20260			Exostosin family protein (.1)		Potri.018G125058 [exp]	18.30	0.5752
AT5G52520		PRORS1, OVA6	PROLYL-TRNA SYNTHETASE 1, OVUL...		Potri.004G078866 [exp]	23.49	0.5787
AT1G01900		SBTI1.1, ATSBT1...	subtilase family protein (.1)		Potri.014G074600 [exp]	33.40	0.5457
AT1G55180		PLDALPHA4, PLDE...	phospholipase D alpha 4 (.1)		Potri.003G037700 [exp]	37.10	0.5461	PLDEPSILON.1
AT4G36880		CP1	cysteine proteinase1 (.1)		Potri.005G141600 [exp]	45.32	0.5497
AT3G47570			Leucine-rich repeat protein ki...		Potri.005G030800 [exp]	58.39	0.5262	RGA.58
AT3G22270			Topoisomerase II-associated pr...		Potri.016G020600 [exp]	59.96	0.5058

Compare expression of checked genes

Potri.018G149100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.