Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G07360 1806 / 0 SH3 domain-containing protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008548 [exp] 1803 / 0 AT2G07360 1822 / 0.0 SH3 domain-containing protein (.1.2) Lus10027587 [exp] 967 / 0 AT2G07360 956 / 0.0 SH3 domain-containing protein (.1.2) Lus10027588 [exp] 929 / 0 AT2G07360 926 / 0.0 SH3 domain-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0010 [poplar] [flax] SH3 PF14604 [poplar] [flax] SH3_9 Variant SH3 domain
Representative CDS sequence Show only first row Show all	>Potri.018G149400.1 pacid=42801246 polypeptide=Potri.018G149400.1.p locus=Potri.018G149400 ID=Potri.018G149400.1.v4.1 annot-version=v4.1 ATGGCGGATTCTTCGTCGGGGACGACGTTGATGGATCTGATAACAGCGGACCCCGGGCCGGCTCCGAAGTCATCGGGATCCTCGGAAGCGCCAACTCCTC CGGCATCGCAGCAACCGACTGGATCGATGTCATATTCCACGCCGACGACGACGACGGCAAGTTCGTCCTCGGGGTCAGGGAAGACAATGCTAGGAGAGAG AAAGTCGAAGAGAGCTACACTTATGCAGATCCAAAACGACACCATTTCTGCTGCTAAAGCTGCCATGAAAACTACTGCCGGTATCAATATCATGCCTCAA AAACAAAAGAAGAATCCGGTTTCGTATTCGCAACTAGCTAGGAGTATTCATGAACTAGCTGCTACATCTGATCAAAAAAGTTCTCAAAAGCAACTAGTGC ATCATGTATTTCCGAAACTTGCTGTTTACAATTCAGTCGATCCGTCGTTGGCACCGTCTCTTCTCATGCTGGATCAGCAATGTGAAGACAGGACGATTCT GCGCTATGTGTATTATTACTTGGCTAGGATTTTATCAGATACTGGTTCTCAAGGTTTAAATCCAGGTGGTGGAATACCGACTCCTAATTGGGATGCTTTG GCTGATATTGATGCTGTTGGAGGGGTGACTAGAGCTGATGTTGTACCAAGGATTGTAGATCAGCTTTCGAAAGAGGCTTCAGATGCTAATGTTGAATTTC ATGCACGGAGATTGCAAGCATTGAAGGCTCTTACATATGCTCCCGAAAGCAACACTGGTATTTTATCCAGATTGTATGAGATTGTATTTGGCATTCTTGA CAAGGTTGGTGACAACCCTCAAAAACGAAAGAAAGGTGTTTTTGGGACTAAAGGTGGTGATAAGGAGTCTATCGTTCGGAGTAATTTGCAATATGCTGCA CTAAGTGCATTAAGAAGACTCCCTCTTGATCCTGGAAACCCAGCATTTCTGCACCGTGCTGTACAGGGGGTTTCATTTGCTGATCCTGTTGCTGTAAGGC ATGCTTTGGAAATTCTCTCTGAGTTGGCAACAAAAGATCCTTATGGAGTTGCAATGGCTTTAGGAAAGCTTGTAGTCCCTGGAGGGGCATTGCAGGATGT TCTTCATTTGCATGATGTGCTTGCTAGAGTTTCGCTGGCCAGGTTGTGTCATACAATATCTAGAGCTCGTGCATTAGATGAGAGGCCTGACATTAAATCT CAGTTCAACTCAGTGCTTTATCAACTTCTCCTAGATCCCAGTGAAAGAGTCTGTTTTGAGGCAATCTTTTGTGTCTTGGGAAAACACGATAATACAGAGA GGACTGAGGAGCGTGCTGCTGGCTGGTACCGTTTAACAAGGGAGATACTGAAGTTGCCAGAAGCACCCTCTCTATCATCGAAGGGATCTATTGCTGATTC AAATGATATGTCAAAGGCTTCTAAAGATAAATCCCACAAGACTAGGCGTCCACAACCTCTTATTAAACTTGTAATGAGAAGGTTGGAAAGTTCTTTTCGT AATTTCTCCAGGCCAGTACTTCATGCAGCAGCAAGAGTTGTGCAGGAGATGGGAAAAAGTCGCGCTGCTGCTTATGCTGTAGGCTTACAGGACATCGATG AAGGAGTTAATGTGAATTCATTTTCTGAGAGTGCAGATCCAGTCGATTCGGATTTTAATGAAAATCCATATGCAGATGGTGCCCGGAAGGTCTCTGCTGT ATCCAGTGCAACAGGTAGCAAGGATACAATTGCAGGTTTATTAGCTTCATTAATGGAGGTGGTACGGACAACTGTAGCCTGTGAATGTGTCTATGTTCGA GCAATGGTAATCAAGGCTTTGATATGGATGCAACTTCCACATGAATCTTTTGAGGAACTGGAATCCATTATCGCATCCGAGCTTTCTGATCCATCATGGC CAGCAACATTGTTGAATGATGTTTTGCTGACTTTGCATGCTCGTTTCAAGGCAACACCAGATATGGCTGTCACCCTGCTTGAAATTGCGAGGATCTTTGC TACTAAGGTTCCAGGAAAGATTGATGCTGATGTGTTGCAGCTTTTGTGGAAAACGTGCCTTGTTGGTGCCGGTCCTGATGGGAAGCACACAGCATTGGAA GCAGTCACTATAGTCCTTGACCTACCACCACCACAGCCTGGGTCAATGTTAGGGCTTACATCAGTGGACAGGGTATCTGCATCTGATCCGAAGTCAGCTT TGGCATTGCAGAGATTAGTCCAAGCAGCAGTGTGGTTCCTTGGAGAAAATGCAAATTATGCTGCTTCCGAATATGCTTGGGAATCTGCAACGCCTCCTGG CACTGCATTGATGATGTTAGATGCAGATAAAATGGTTGCTGCTGCCAGTTCTCGTAATCCTACTCTAGCTGGTGCTTTGACTCGACTACAGAGGTGTGCT TTCAGTGGCAGCTGGGAGGTTCGAATTGTTGCTGCTCAAGCCCTCACAACTATGGCAATCAGGTCTGGTGAGCCCTTTAGGCTGCAGATCTATGAATTTT TAAATGCTTTAGCACAGGGTGGAGTGCAGTCCCAGCTATCAGAAATGCATCTTAGTAATGGGGAAGATCAAGGAGCCAGCGGTACAGGCCTTGGAGTCTT AATAAGTCCCATGGTAAAGGTCCTTGATGAAATGTACAGAGCACAAGATGAACTGATCAGAGATATAAGAAACCATGACAATACAAATAAAGAATGGACA GATGAAGAACTGAAGAAACTTTATGAAACGCATGAGAGATTGTTAGATATTGTTTCATTGTTTTGTTATGTTCCAAGAGCAAAGTATCTACCTTTGGGAC CAATAAGTGCTAAGCTTATTGATATTTATCGCACCAAGCACAACATTAGTGCATCAACTGGCTTAAGTGATCCAGCTGTTGCCACTGGAATTTCTGACCT AATGTATGAATCAAAGCCGGCCCCTGTTGAGTCTGATGCGCTTGATGATGACCTAGTAAATGCTTGGGCAGCAAACCTTGGTGATGATGGTTTATTGGGA AATAGCGCACCTGCAATGAGTAGGGTCAACGAATTTCTTGCTGGTATGGGAACTGAAGCTCCGGATGTTGAAGAGGAAAATATAATATCTAGACCTTCAG TCAGCTATGATGATATGTGGGCAAAGACACTTTTGGAGTCTTCAGAGTTAGAGGAAGACGTGAGGTCATCTGGGTCCTCATCCCCAGACTCAATAGGGTC AGTTGAAACTTCTATATCGTCCCACTTTGGTGGAATGAACTACCCATCACTGTTCAGTTCTCGGCCCACCAGTTATGGAGCATCACAAATATCGGAGAGG TCAGGTGGAAACAGGTATAGCGGTCCCTCGTCCTTTTATGAGGGTGCAGGTTCTCCGATTAGGGAAGAGCCCCCGCCATACACATCACCTGACAGGTCAT TTGAAAACCCCTTGGCTGGGCATGGGTCCCGGAGTTTTGAATCACAGGAATCAGGACGAGCATCATCTGCAAATCCACAATATGGCTCTGCACTCTATGA CTTCAGTGCGGGTGGAGATGATGAGTTGAGTTTAACAGCAGGAGAAGAGCTTGAAATTGAGTACGAGGTTGATGGATGGTTTTATGTCAAGAAGAAACGC CCTGGCAGGGATGGCAAAATGGCCGGACTAGTTCCTGTACTCTATGTCAATCAAAGTTAA
AA sequence Show only first row Show all	>Potri.018G149400.1 pacid=42801246 polypeptide=Potri.018G149400.1.p locus=Potri.018G149400 ID=Potri.018G149400.1.v4.1 annot-version=v4.1 MADSSSGTTLMDLITADPGPAPKSSGSSEAPTPPASQQPTGSMSYSTPTTTTASSSSGSGKTMLGERKSKRATLMQIQNDTISAAKAAMKTTAGINIMPQ KQKKNPVSYSQLARSIHELAATSDQKSSQKQLVHHVFPKLAVYNSVDPSLAPSLLMLDQQCEDRTILRYVYYYLARILSDTGSQGLNPGGGIPTPNWDAL ADIDAVGGVTRADVVPRIVDQLSKEASDANVEFHARRLQALKALTYAPESNTGILSRLYEIVFGILDKVGDNPQKRKKGVFGTKGGDKESIVRSNLQYAA LSALRRLPLDPGNPAFLHRAVQGVSFADPVAVRHALEILSELATKDPYGVAMALGKLVVPGGALQDVLHLHDVLARVSLARLCHTISRARALDERPDIKS QFNSVLYQLLLDPSERVCFEAIFCVLGKHDNTERTEERAAGWYRLTREILKLPEAPSLSSKGSIADSNDMSKASKDKSHKTRRPQPLIKLVMRRLESSFR NFSRPVLHAAARVVQEMGKSRAAAYAVGLQDIDEGVNVNSFSESADPVDSDFNENPYADGARKVSAVSSATGSKDTIAGLLASLMEVVRTTVACECVYVR AMVIKALIWMQLPHESFEELESIIASELSDPSWPATLLNDVLLTLHARFKATPDMAVTLLEIARIFATKVPGKIDADVLQLLWKTCLVGAGPDGKHTALE AVTIVLDLPPPQPGSMLGLTSVDRVSASDPKSALALQRLVQAAVWFLGENANYAASEYAWESATPPGTALMMLDADKMVAAASSRNPTLAGALTRLQRCA FSGSWEVRIVAAQALTTMAIRSGEPFRLQIYEFLNALAQGGVQSQLSEMHLSNGEDQGASGTGLGVLISPMVKVLDEMYRAQDELIRDIRNHDNTNKEWT DEELKKLYETHERLLDIVSLFCYVPRAKYLPLGPISAKLIDIYRTKHNISASTGLSDPAVATGISDLMYESKPAPVESDALDDDLVNAWAANLGDDGLLG NSAPAMSRVNEFLAGMGTEAPDVEEENIISRPSVSYDDMWAKTLLESSELEEDVRSSGSSSPDSIGSVETSISSHFGGMNYPSLFSSRPTSYGASQISER SGGNRYSGPSSFYEGAGSPIREEPPPYTSPDRSFENPLAGHGSRSFESQESGRASSANPQYGSALYDFSAGGDDELSLTAGEELEIEYEVDGWFYVKKKR PGRDGKMAGLVPVLYVNQS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G07360			SH3 domain-containing protein ...		Potri.018G149400 [exp]	0	1
AT1G52360			Coatomer, beta' subunit (.1.2)		Potri.003G056300 [exp]	3.87	0.9284
AT3G11130			Clathrin, heavy chain (.1)		Potri.009G073300 [exp]	3.87	0.9190
AT1G62020			Coatomer, alpha subunit (.1)		Potri.015G069700 [exp]	5.65	0.9177
AT2G02860		ATSUT2, ATSUC3,...	ARABIDOPSIS THALIANA SUCROSE T...		Potri.010G093600 [exp]	6.00	0.8636	SUC3.1
AT3G50590			Transducin/WD40 repeat-like su...		Potri.007G041000 [exp]	7.74	0.8977
AT1G52360			Coatomer, beta' subunit (.1.2)		Potri.001G179200 [exp]	8.12	0.9193
AT1G68100		IAR1	IAA-ALANINE RESISTANT 1, ZIP m...		Potri.008G139900 [exp]	10.77	0.8447
AT3G17430			Nucleotide-sugar transporter f...		Potri.010G001700 [exp]	10.95	0.8580
AT3G48380			Peptidase C78, ubiquitin fold ...		Potri.015G088200 [exp]	12.72	0.8695
AT1G01510		AN	ANGUSTIFOLIA, NAD(P)-binding R...		Potri.014G089400 [exp]	14.96	0.8747

Compare expression of checked genes

Potri.018G149400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.