Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18240 446 / 6e-145 ATSS4, SSIV ARABIDOPSIS THALIANA STARCH SYNTHASE 4, starch synthase 4 (.1) AT1G11720 344 / 3e-106 ATSS3 starch synthase 3 (.1.2) AT3G01180 201 / 2e-55 ATSS2 starch synthase 2 (.1) AT5G24300 186 / 8e-51 SSI1, SSI, ATSS1 STARCH SYNTHASE 1, Glycogen/starch synthases, ADP-glucose type (.1.2) AT5G65685 153 / 2e-40 UDP-Glycosyltransferase superfamily protein (.1.2) AT1G32900 133 / 1e-32 GBSS1 granule bound starch synthase 1, UDP-Glycosyltransferase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G351800 [exp] 439 / 1e-141 AT4G18240 1293 / 0.0 ARABIDOPSIS THALIANA STARCH SYNTHASE 4, starch synthase 4 (.1) Potri.004G014100 [exp] 356 / 6e-110 AT1G11720 1460 / 0.0 starch synthase 3 (.1.2) Potri.007G009600 [exp] 212 / 8e-60 AT5G65685 507 / 2e-174 UDP-Glycosyltransferase superfamily protein (.1.2) Potri.017G084100 [exp] 194 / 6e-53 AT3G01180 985 / 0.0 starch synthase 2 (.1) Potri.015G012400 [exp] 191 / 2e-52 AT5G24300 904 / 0.0 STARCH SYNTHASE 1, Glycogen/starch synthases, ADP-glucose type (.1.2) Potri.011G152200 [exp] 154 / 1e-39 AT1G32900 880 / 0.0 granule bound starch synthase 1, UDP-Glycosyltransferase superfamily protein (.1) Potri.001G449500 [exp] 134 / 6e-33 AT1G32900 922 / 0.0 granule bound starch synthase 1, UDP-Glycosyltransferase superfamily protein (.1) Potri.011G079450 [exp] 50 / 9e-08 AT4G18240 77 / 1e-18 ARABIDOPSIS THALIANA STARCH SYNTHASE 4, starch synthase 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038491 [exp] 443 / 1e-143 AT4G18240 1278 / 0.0 ARABIDOPSIS THALIANA STARCH SYNTHASE 4, starch synthase 4 (.1) Lus10023319 [exp] 441 / 4e-143 AT4G18240 1303 / 0.0 ARABIDOPSIS THALIANA STARCH SYNTHASE 4, starch synthase 4 (.1) Lus10028133 [exp] 419 / 2e-134 AT4G18240 1285 / 0.0 ARABIDOPSIS THALIANA STARCH SYNTHASE 4, starch synthase 4 (.1) Lus10042837 [exp] 416 / 8e-132 AT4G18240 1281 / 0.0 ARABIDOPSIS THALIANA STARCH SYNTHASE 4, starch synthase 4 (.1) Lus10006780 [exp] 341 / 2e-104 AT1G11720 1529 / 0.0 starch synthase 3 (.1.2) Lus10020044 [exp] 312 / 6e-94 AT1G11720 1508 / 0.0 starch synthase 3 (.1.2) Lus10033014 [exp] 198 / 3e-54 AT3G01180 973 / 0.0 starch synthase 2 (.1) Lus10018116 [exp] 192 / 7e-53 AT5G24300 855 / 0.0 STARCH SYNTHASE 1, Glycogen/starch synthases, ADP-glucose type (.1.2) Lus10022398 [exp] 191 / 2e-52 AT5G24300 874 / 0.0 STARCH SYNTHASE 1, Glycogen/starch synthases, ADP-glucose type (.1.2) Lus10015371 [exp] 190 / 9e-52 AT3G01180 928 / 0.0 starch synthase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF00534 [poplar] [flax] Glycos_transf_1 Glycosyl transferases group 1 CL0113 [poplar] [flax] GT-B PF08323 [poplar] [flax] Glyco_transf_5 Starch synthase catalytic domain
Representative CDS sequence Show only first row Show all	>Potri.018G149500.4 pacid=42800457 polypeptide=Potri.018G149500.4.p locus=Potri.018G149500 ID=Potri.018G149500.4.v4.1 annot-version=v4.1 ATGATAATGGAGAATGCATTAGCAGGTAAGTTTCTTAAGCCATGCTTCCATTTGAATTCAAGAAAAGCAACATTGGTACTGCAGAAAAGGAAGGGAATTG GCACCTCCCACAAGTTCTGCTATCCTTCCAAATTCAAGATTCATCCCCTTGTTTCTCATCCCCTTCATCTCCCCAATTTAGAGGCGGGTGGTGTTGAAAT ACAAGAAAGTAGTTATGAAGGTTTAGTTTCTGATCAAGAAATTGTCTGGCCTTCTCCCGATGATGAAATCCCATTTTGGAAGAGGGATTTCCCTTCCTGG AATGTGAGTCCAGAAGTGCCAAATGAAAGTTCTGTGAAGGATTCTGATCTTATGCACATAATTCATGTCACAGCTGAGATGGCACCAATAGCTAAAGTTG GTGGACTTGGTGATGTTGTTACTGGACTTGCTCGAGCAAGTCTTTCTCGTGGCCATACAGTGGATATAGTGCTCCCCTTCTATGAGTGCATTCAGAAGCA GCAAATCAATGACTTGGCATTGATCAGTACTTATGATTCTTATCATGATGGGAATTGGATTCCTACTAATGCCTATCGTGGAGTTGTTTCGGGCATTCCA GTGATATTTATTGAGCCATCAAATGAATTCTTCAAGGGGCAACAAGTATACGGAGGTTCATATAATGAGCTAGAGGCTTATTTGTTTTTTAGCCGTGCTT GCCTTGAATGGATGCAGGTAACAGGTGCTCAGCCTGACATTATCCATGTCCATGAATGGCAAATAGGTGCCTTGCCCCTGCTTTACTGGGATATGTATCA ATATCTTTCACTGAAGAAACCACGGATTGTATTAACTATACATAACATGGAGCATTATGGAGAGTGCCGCCAAGAGCAACTCAGCAAGTGTGGTCTTGAT GGTTCTATGTATGCAACAGCGGAGAAGGCAGTTGATGATCGGACTATTGGCCATAATCCTGAGAGACTAAGCTTATTGAAAGGTGGAATTGTATACAGCA ATGCAGTGGTTACAGTCTCGCCAACATACCTTAAGGAAACTCTCTGCTCTGGTTGGTTGGCCAGCACTCTAATGATGCATTGTGATAAGTACTTTGGTGT TTTGAATGGGATTGACACTGCAATGTGGAACCCTGCTACCGATGTTTTCTTGCCTGCTAAGTTCCATGCTCAAAAAATTGAGGGCAAGAAGTTATGTAAA TACTACATACAAAGGGGGCTTGGTTTGGCTGCTAAAAGCATCACCAGCAGTAATCATGTGCCAGATGCAACAGTTAAGATCCCATTGGTAGTCTGTATTA CTAGACTAGTTCCTCAAAAGGGTCTGCATTTGATTACTCATGCACTTAAGCATATTGAAGAACTGGGGGGGCAGATGATTGTCCTTGGAAAAGCTCCAGA TGGTCGAGTTGAAGGGGAATTCAAACGTCTTGCAGATATGCATAACCAAGGTCCTAGCATCCGTATCCTTTTGATGTATAGTGAGGAGCTGTCCCACATG CTTTATGCTGCAGCAGACATGGTGTTAGTTCCTTCCATGTATGAGCCATGTGGACTTTCCCAAATCATTGGAATGCGTTATGGATCGGTTCCAGTTGTTA GAAAGACTGGTGGCCTCGCAGACACAGTCTTTGACATGGATGACCAGTCGAACCCCGAGATTGCTAATGGGTTTGTTTTTGAAGGAATTGATGAAGGATC CTTAAACTGGGCTCTAGACCGCGCATTTGCTTACTACAGAGATAAACCAGATGAGTGGAATTGCATTGTGAAGAAGGTAATCGAAATTGACAATAGCTGG AACAACACGGCTGGGAAATACATCGAAGTTTACAATTCAGTTAGAGGGAGATCTTGA
AA sequence Show only first row Show all	>Potri.018G149500.4 pacid=42800457 polypeptide=Potri.018G149500.4.p locus=Potri.018G149500 ID=Potri.018G149500.4.v4.1 annot-version=v4.1 MIMENALAGKFLKPCFHLNSRKATLVLQKRKGIGTSHKFCYPSKFKIHPLVSHPLHLPNLEAGGVEIQESSYEGLVSDQEIVWPSPDDEIPFWKRDFPSW NVSPEVPNESSVKDSDLMHIIHVTAEMAPIAKVGGLGDVVTGLARASLSRGHTVDIVLPFYECIQKQQINDLALISTYDSYHDGNWIPTNAYRGVVSGIP VIFIEPSNEFFKGQQVYGGSYNELEAYLFFSRACLEWMQVTGAQPDIIHVHEWQIGALPLLYWDMYQYLSLKKPRIVLTIHNMEHYGECRQEQLSKCGLD GSMYATAEKAVDDRTIGHNPERLSLLKGGIVYSNAVVTVSPTYLKETLCSGWLASTLMMHCDKYFGVLNGIDTAMWNPATDVFLPAKFHAQKIEGKKLCK YYIQRGLGLAAKSITSSNHVPDATVKIPLVVCITRLVPQKGLHLITHALKHIEELGGQMIVLGKAPDGRVEGEFKRLADMHNQGPSIRILLMYSEELSHM LYAAADMVLVPSMYEPCGLSQIIGMRYGSVPVVRKTGGLADTVFDMDDQSNPEIANGFVFEGIDEGSLNWALDRAFAYYRDKPDEWNCIVKKVIEIDNSW NNTAGKYIEVYNSVRGRS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G18240		ATSS4, SSIV	ARABIDOPSIS THALIANA STARCH SY...		Potri.018G149500 [exp]	0	1
AT5G37930			Protein with RING/U-box and TR...		Potri.004G091800 [exp]	4.24	0.8020
AT1G10095			Protein prenylyltransferase su...		Potri.013G047100 [exp]	5.65	0.7204
AT5G60050			BTB/POZ domain-containing prot...		Potri.001G233900 [exp]	14.96	0.6925
AT5G38470		RAD23D	RADIATION SENSITIVE23D, Rad23 ...		Potri.008G119700 [exp]	21.54	0.6959
AT5G17990		PAT1, TRP1	PHOSPHORIBOSYLANTHRANILATE TRA...		Potri.015G078801 [exp]	25.29	0.7252
AT3G45880			2-oxoglutarate (2OG) and Fe(II...		Potri.001G233200 [exp]	26.94	0.7186
AT5G15940			NAD(P)-binding Rossmann-fold s...		Potri.001G453500 [exp]	30.39	0.6960
AT5G60910	MADS	FUL, AGL8	FRUITFULL, AGAMOUS-like 8 (.1....		Potri.012G062300 [exp]	30.80	0.6579
AT4G32360			Pyridine nucleotide-disulphide...		Potri.017G118801 [exp]	31.93	0.7188
AT3G59780			Rhodanese/Cell cycle control p...		Potri.019G098001 [exp]	33.67	0.6994

Compare expression of checked genes

Potri.018G149500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.