Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G43270 187 / 2e-54 SBP SPL2 squamosa promoter binding protein-like 2 (.1.2.3) AT1G27360 160 / 2e-44 SBP SPL11 squamosa promoter-like 11 (.1.2.3.4) AT1G27370 159 / 6e-44 SBP SPL10 squamosa promoter binding protein-like 10 (.1.2.3.4) AT1G69170 138 / 3e-36 SBP SPL6 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) AT2G42200 137 / 5e-36 SBP SPL9, AtSPL9 squamosa promoter binding protein-like 9 (.1) AT3G57920 132 / 1e-34 SBP SPL15, MSC1 squamosa promoter binding protein-like 15 (.1) AT1G02065 128 / 4e-33 SBP SPL8 squamosa promoter binding protein-like 8 (.1.2) AT5G50670 122 / 7e-31 SBP SPL13B SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13B, SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13, Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) AT5G50570 122 / 7e-31 SBP SPL13, SPL13A SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13, Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1), Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.2) AT1G76580 125 / 1e-30 SBP SPL16 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G172600 [exp] 292 / 7e-94 AT5G43270 237 / 3e-73 squamosa promoter binding protein-like 2 (.1.2.3) Potri.001G055900 [exp] 256 / 2e-80 AT5G43270 233 / 3e-72 squamosa promoter binding protein-like 2 (.1.2.3) Potri.016G048500 [exp] 143 / 3e-38 AT2G42200 217 / 3e-67 squamosa promoter binding protein-like 9 (.1) Potri.008G097900 [exp] 143 / 2e-37 AT1G69170 169 / 2e-47 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) Potri.014G057800 [exp] 138 / 2e-36 AT1G27370 137 / 3e-36 squamosa promoter binding protein-like 10 (.1.2.3.4) Potri.001G058600 [exp] 137 / 5e-36 AT5G50570 164 / 3e-47 SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13, Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1), Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.2) Potri.003G169400 [exp] 135 / 6e-36 AT5G50570 163 / 2e-47 SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13, Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1), Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.2) Potri.002G142400 [exp] 135 / 2e-35 AT1G27360 141 / 5e-38 squamosa promoter-like 11 (.1.2.3.4) Potri.014G057700 [exp] 134 / 3e-35 AT1G02065 247 / 3e-80 squamosa promoter binding protein-like 8 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021614 [exp] 289 / 2e-93 AT5G43270 192 / 9e-57 squamosa promoter binding protein-like 2 (.1.2.3) Lus10040595 [exp] 192 / 1e-56 AT5G43270 135 / 9e-36 squamosa promoter binding protein-like 2 (.1.2.3) Lus10011356 [exp] 189 / 2e-55 AT5G43270 211 / 4e-64 squamosa promoter binding protein-like 2 (.1.2.3) Lus10006411 [exp] 176 / 2e-50 AT5G43270 204 / 1e-61 squamosa promoter binding protein-like 2 (.1.2.3) Lus10023818 [exp] 137 / 4e-36 AT2G42200 191 / 3e-57 squamosa promoter binding protein-like 9 (.1) Lus10011348 [exp] 134 / 1e-35 AT5G50670 164 / 3e-48 SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13B, SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13, Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) Lus10021034 [exp] 134 / 4e-35 AT2G42200 199 / 2e-60 squamosa promoter binding protein-like 9 (.1) Lus10003126 [exp] 132 / 5e-35 AT5G50670 161 / 5e-47 SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13B, SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13, Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) Lus10016275 [exp] 131 / 2e-34 AT2G42200 179 / 1e-53 squamosa promoter binding protein-like 9 (.1) Lus10021141 [exp] 130 / 8e-33 AT1G69170 168 / 9e-47 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03110 [poplar] [flax] SBP SBP domain
Representative CDS sequence Show only first row Show all	>Potri.018G149900.3 pacid=42801385 polypeptide=Potri.018G149900.3.p locus=Potri.018G149900 ID=Potri.018G149900.3.v4.1 annot-version=v4.1 ATGGACTGGAACTCCACTGCATCTGAGGGGAACTGGGAGAACATAGCAGGGTTAAGTGCCAAGGCTAGTGACATTCCAAAACAAGTACCATTGGCATACC ATGAGACAGAGGGAGATGGAGCAATTGATAAAGCAATAACTTATTCGTCTGGTGGTGGTTTATCAAGCTCTGATTTGTGGCATTGCTCTTCATCCAAGAG CTCAGTTTCACCCTCTGTCGACTCTTCATTGAAGGGGGGGATCAAGACTTATAGCACTGCAGATGGTTTTCCTGGAGTTATCATTAGAAAGGACTTGACT AGGGTAGAAAGTACTGAGAATATTCCATCTCTGGGTGCTTCTGCTAGCTCTGGTGAACCAGTAATTGGCTTGAAGCTTGGTAAACGGATGTACTTTGAAG ACATTTGTACTACCAGCACTGCCAAATCATCGTCTTCATCTATTGTTTCCACTTCCTGTACTGCTACAACAAAGAGATCTAGGGCATCATATCCAAGTAC ACAGTCTCCACGTTGCCAAGTGGAAGGATGCAACCTTGATCTCAAGTCAGCTAAAGATTACCATCGCAGGCATAGAATCTGTGAAAAACATTCCAAAAGC CCAAAGGTTATTGTTGCTGGCATGGAACGCCGATTTTGCCAACAGTGCAGCAGGTTCCATGAATTATCAGAGTTTGATGACAAGAAGCGAAGCTGTCGTA GACGTCTCTCTGATCACAATGCAAGGCGACGGAGGCCACAACCTGAGGCAATCCGGTTCAATTCAGCAAGGCCATCATCATCACCATCATCATTTTATGA TGGTAGACAGCAGATGAATGTTGTATTGAATAGGGTGCCTTTCCTGGCAGGAAATTCAACTTGGCAAAGCGAGTGCGGCTTTAAAGTCACTCACGCCGGA GATTTTTTTATTAGGCCTGCAAAAGCAGGGGGCATCCATAGGCAGCTTAGCTATCCCTGCAATGAAGTGCCAGATGCAGCTTCAACAATACCAACAGACT CGGATAAAATTATCTCTTTTGAGAGAAGTACACCCCAGGTCTTTAGTCAAGGTTTCGAGGGGTCTGCATTAACTTCTAACATTGAGGTAGCACCAGATCT TCGGCGTGCTCTCTCTCTTCTGTCAACCACTTCTTGGGGCTCGAATGAGCATGGATCCACCTCTCTGGATCAACTGATGCTTGCAAACCAAACAAGCATG ACACAGCCAATGATAAATGCTGAACTCCAAAATTGTCCAGTTGCTTCATCAGAAAATGCACGGATGGAACAAGCATCCCTTGAGTCTCGGGTGCATTCTT TGGATTTACATGACAATGGAAACGTCCAGTTGCAAGAGTTTCAGCTGCTCAAAGCACCCTATGCTACCGGCTGCTTTTATTCCAATCAATTCAGCTAA
AA sequence Show only first row Show all	>Potri.018G149900.3 pacid=42801385 polypeptide=Potri.018G149900.3.p locus=Potri.018G149900 ID=Potri.018G149900.3.v4.1 annot-version=v4.1 MDWNSTASEGNWENIAGLSAKASDIPKQVPLAYHETEGDGAIDKAITYSSGGGLSSSDLWHCSSSKSSVSPSVDSSLKGGIKTYSTADGFPGVIIRKDLT RVESTENIPSLGASASSGEPVIGLKLGKRMYFEDICTTSTAKSSSSSIVSTSCTATTKRSRASYPSTQSPRCQVEGCNLDLKSAKDYHRRHRICEKHSKS PKVIVAGMERRFCQQCSRFHELSEFDDKKRSCRRRLSDHNARRRRPQPEAIRFNSARPSSSPSSFYDGRQQMNVVLNRVPFLAGNSTWQSECGFKVTHAG DFFIRPAKAGGIHRQLSYPCNEVPDAASTIPTDSDKIISFERSTPQVFSQGFEGSALTSNIEVAPDLRRALSLLSTTSWGSNEHGSTSLDQLMLANQTSM TQPMINAELQNCPVASSENARMEQASLESRVHSLDLHDNGNVQLQEFQLLKAPYATGCFYSNQFS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G43270	SBP	SPL2	squamosa promoter binding prot...		Potri.018G149900 [exp]	0	1
AT4G14340		CKL11, CKI1	CASEIN KINASE I-LIKE 11, casei...		Potri.013G047200 [exp]	4.69	0.6554	Pt-CKI1.1
AT4G36250		ALDH3F1	aldehyde dehydrogenase 3F1 (.1...		Potri.007G017100 [exp]	10.81	0.6124	Pt-ALDH3.2
AT1G13170		ORP1D	OSBP(oxysterol binding protein...		Potri.010G051400 [exp]	13.63	0.6663
AT3G55990		TBL29, ESK1	TRICHOME BIREFRINGENCE-LIKE 29...		Potri.008G070000 [exp]	21.67	0.6090
AT5G52870		MAKR5	MEMBRANE-ASSOCIATED KINASE REG...		Potri.012G035700 [exp]	23.47	0.5678
AT5G50570	SBP	SPL13, SPL13A	SQUAMOSA PROMOTER-BINDING PROT...		Potri.015G098900 [exp]	25.98	0.5967
AT4G14950		KMS1	Killing Me Slowly 1, SNARE ass...		Potri.013G021700 [exp]	29.49	0.5661
AT2G42200	SBP	SPL9, AtSPL9	squamosa promoter binding prot...		Potri.016G048500 [exp]	34.98	0.6062
AT5G65670	AUX_IAA	IAA9	indole-3-acetic acid inducible...		Potri.002G108000 [exp]	35.22	0.5862	Pt-IAA8.4
AT5G60020		LAC17, ATLAC17	laccase 17 (.1)		Potri.001G341600 [exp]	35.69	0.5719

Compare expression of checked genes

Potri.018G149900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.