Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58090 735 / 0 O-Glycosyl hydrolases family 17 protein (.1) AT4G31140 646 / 0 O-Glycosyl hydrolases family 17 protein (.1) AT5G20870 526 / 0 O-Glycosyl hydrolases family 17 protein (.1) AT3G04010 486 / 3e-169 O-Glycosyl hydrolases family 17 protein (.1) AT5G18220 478 / 4e-166 O-Glycosyl hydrolases family 17 protein (.1) AT2G19440 474 / 1e-164 O-Glycosyl hydrolases family 17 protein (.1) AT3G24330 474 / 2e-164 O-Glycosyl hydrolases family 17 protein (.1) AT1G64760 470 / 4e-163 O-Glycosyl hydrolases family 17 protein (.1.2) AT5G64790 463 / 2e-160 O-Glycosyl hydrolases family 17 protein (.1) AT4G17180 445 / 2e-153 O-Glycosyl hydrolases family 17 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G080600 [exp] 868 / 0 AT5G58090 739 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.006G280700 [exp] 640 / 0 AT4G31140 676 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.018G000900 [exp] 633 / 0 AT4G31140 667 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.006G216700 [exp] 576 / 0 AT5G20870 633 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.007G078900 [exp] 497 / 1e-173 AT5G64790 528 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.013G059700 [exp] 489 / 1e-170 AT1G64760 701 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.018G072300 [exp] 488 / 5e-170 AT3G24330 647 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.019G032900 [exp] 484 / 2e-168 AT1G64760 698 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.006G002100 [exp] 463 / 2e-160 AT4G17180 711 / 0.0 O-Glycosyl hydrolases family 17 protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028104 [exp] 743 / 0 AT5G58090 729 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10040579 [exp] 743 / 0 AT5G58090 729 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10024535 [exp] 583 / 0 AT4G31140 627 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10001183 [exp] 564 / 0 AT5G20870 628 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10043075 [exp] 561 / 0 AT5G20870 631 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10002633 [exp] 486 / 3e-169 AT1G64760 681 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10031098 [exp] 484 / 1e-168 AT1G64760 694 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10020261 [exp] 484 / 1e-168 AT1G64760 676 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10039095 [exp] 453 / 2e-156 AT4G17180 727 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10006811 [exp] 453 / 5e-156 AT5G64790 565 / 0.0 O-Glycosyl hydrolases family 17 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [poplar] [flax] Glyco_hydro_tim PF00332 [poplar] [flax] Glyco_hydro_17 Glycosyl hydrolases family 17 CL0058 [poplar] [flax] PF07983 [poplar] [flax] X8 X8 domain
Representative CDS sequence Show only first row Show all	>Potri.018G150400.1 pacid=42801647 polypeptide=Potri.018G150400.1.p locus=Potri.018G150400 ID=Potri.018G150400.1.v4.1 annot-version=v4.1 ATGGGTTTGTATCATTTGGCTATTGGATTAGTTTCCTTGCTTTCTATGGTGAGTGGTGCGATGACCATAGGTGCCAACTGGGGAACACAAGCATCCCACC CCTTGCCCCCAGAAACTGTGGTGAGGCTACTTAGGGAAAATGGGATCCAAAAAGTTAAACTTTTTGATGCAGATTATGATACTCTAAAAGTTCTAGGTAA GACTGGGATTGAGGTCATGGTGGGTATTCCAAATGATTTGCTTGCTTCTCTCGCTGGTAGCATGAAGGCTGCTGAGAAATGGGTTTCAAGAAATGTCTCC GCACATGTCACCAACAATAATGTCAACATCAGATATGTTGCAGTTGGAAATGAACCTTTCTTGCAGACGTACAATGGAAGCTTTCTCAGAACAACCTTCC CTGCTCTCCAGAATGTCCAATCTGCTCTGATAAAAGCTGGGCTTGGCAATTTAATAAAGGTCACTGTCCCTCTGAATGCTGATGTCTATGAGAGCTCAAG TGGTCTTCCTTCTGGTGGTGACTTCCGAGCTGATATCCATGATCTCATGCTTACCATTGTAAAATTCTTGAATGATGCCGGTGCCCCCTTTACTGTGAAT ATCTATCCTTTCATAAGCCTCTATATTGATTCCAACTTCCCGGTTGAGTATGCCTTCTTCGATGGCAATGCAAATCCTGTAAACGATGGTGGCACATCCT ATTATAACATGTTTGATGCTAACTATGATACACTTGTGAATGCTCTACAAAAGAATGGGTTTGGGAATCTACCTATCATTGTTGGAGAGATCGGATGGCC AACTGATGGAGACAGAAATGCTAACGTAGAATATGCCCGGCGTTTCAACCAAGGTTTCATGTCACACATTGCAAGTGGGAAAGGAACCCCAATGAGGCCT AATGCCGGTATTAATGCCTATTTGTTCAGTTTGATTGATGAAGATGCTAAAAGTATTGATCCTGGAAACTTCGAACGGCATTGGGGGATATTTACATTTG ATGGAATACCCAAATACAGTCTCAACCTTGGCACAACAAACACAGGAGCTTTAATTCCAGCTAGAAGCGTCCACTACCTGGAAAGAAAATGGTGTGTGAT GAAGCCGTCGGCCAAGCTTGATGACCCACAAGTGGCACCAAGTGTAAGCTATGCGTGTGGACTAGCAGACTGTACTAGCCTCGGTTATGGGACATCATGT GGAAATTTGGATCCTAGGGAGAACATATCATATGCATTCAACAGCTACTTCCAGATACAAAATCAACTGGGAGATGCATGCAAGTTTCCAAACCTGTCGA CAATAACCAGGACAGATCCATCAACTTCAACTTGCAGATTTGCGATAATGATAGAGCCATACTATGGTGGCGTGGGACAGACATTCCGGTATGGCAAGAA GGTGGCCTTGGGTGGTTTGATTGCTCTATTTTTCCTAACGATTGTGTAA
AA sequence Show only first row Show all	>Potri.018G150400.1 pacid=42801647 polypeptide=Potri.018G150400.1.p locus=Potri.018G150400 ID=Potri.018G150400.1.v4.1 annot-version=v4.1 MGLYHLAIGLVSLLSMVSGAMTIGANWGTQASHPLPPETVVRLLRENGIQKVKLFDADYDTLKVLGKTGIEVMVGIPNDLLASLAGSMKAAEKWVSRNVS AHVTNNNVNIRYVAVGNEPFLQTYNGSFLRTTFPALQNVQSALIKAGLGNLIKVTVPLNADVYESSSGLPSGGDFRADIHDLMLTIVKFLNDAGAPFTVN IYPFISLYIDSNFPVEYAFFDGNANPVNDGGTSYYNMFDANYDTLVNALQKNGFGNLPIIVGEIGWPTDGDRNANVEYARRFNQGFMSHIASGKGTPMRP NAGINAYLFSLIDEDAKSIDPGNFERHWGIFTFDGIPKYSLNLGTTNTGALIPARSVHYLERKWCVMKPSAKLDDPQVAPSVSYACGLADCTSLGYGTSC GNLDPRENISYAFNSYFQIQNQLGDACKFPNLSTITRTDPSTSTCRFAIMIEPYYGGVGQTFRYGKKVALGGLIALFFLTIV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G58090			O-Glycosyl hydrolases family 1...		Potri.018G150400 [exp]	0	1
AT3G13920		RH4, TIF4A1, EI...	eukaryotic translation initiat...		Potri.001G197900 [exp]	2.82	0.7805
AT3G15380			Plasma-membrane choline transp...		Potri.011G121100 [exp]	4.35	0.7896
AT2G05810			ARM repeat superfamily protein...		Potri.002G224400 [exp]	7.93	0.7722
AT5G09810		ACT2/7, ACT7	actin 7 (.1)		Potri.011G148000 [exp]	17.46	0.7499	ACT6
AT3G04730	AUX_IAA	IAA16	indoleacetic acid-induced prot...		Potri.013G041400 [exp]	17.94	0.6966
AT5G56590			O-Glycosyl hydrolases family 1...		Potri.018G068600 [exp]	18.00	0.7530
AT2G27590			S-adenosyl-L-methionine-depend...		Potri.004G184400 [exp]	20.24	0.6579
AT3G13920		RH4, TIF4A1, EI...	eukaryotic translation initiat...		Potri.003G043700 [exp]	21.90	0.7081
AT2G18880		VIL3, VEL2	VIN3-like 3, vernalization5/VI...		Potri.002G111600 [exp]	22.91	0.6940
AT1G55360			Protein of Unknown Function (D...		Potri.003G221200 [exp]	25.23	0.7114

Compare expression of checked genes

Potri.018G150400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.