Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58100 1362 / 0 unknown protein AT3G28720 75 / 1e-13 unknown protein AT4G16180 52 / 2e-06 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G080700 [exp] 1704 / 0 AT5G58100 1315 / 0.0 unknown protein Potri.017G078700 [exp] 73 / 6e-13 AT3G28720 823 / 0.0 unknown protein Potri.004G123900 [exp] 69 / 8e-12 AT3G28720 852 / 0.0 unknown protein Potri.010G146800 [exp] 44 / 0.0004 AT4G16180 1235 / 0.0 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027581 [exp] 1481 / 0 AT5G58100 1451 / 0.0 unknown protein Lus10008552 [exp] 865 / 0 AT5G58100 886 / 0.0 unknown protein Lus10008551 [exp] 167 / 1e-47 AT5G58100 154 / 8e-44 unknown protein Lus10033019 [exp] 73 / 2e-13 AT3G28720 450 / 2e-155 unknown protein Lus10015362 [exp] 72 / 7e-13 AT3G28720 628 / 0.0 unknown protein Lus10033020 [exp] 49 / 1e-05 AT3G28720 599 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.018G150600.6 pacid=42800493 polypeptide=Potri.018G150600.6.p locus=Potri.018G150600 ID=Potri.018G150600.6.v4.1 annot-version=v4.1 ATGGGCGTCGATCAATCTACAGCTTCTTTTAGATTTATTACTATCACCTCCGCCTTTCTGACACTGTTGATAGCAACGGGGTCGTATGGGTCTCCTTCTG GAACTCGCAAAACGGGAAAGTCGTCGTCTTCATCATCATCATCATCATCATCATCGGTGTTTTCTTTATTCAATCTCAAAGAGAAGAGTAGGTTTTGGAG TGAGTCTGTTATTCACAGCGGTGATTTTGATGATTTGGAATCTTTAAGCCCTGCCAAAATGGGAGCTCGCAATTTCACCAACGCCGGTAACATTGCAAAT TATCTTAAGCTCCAAGAAGTGGATTCGATGTATCTTCCGGTTCCTGTAAATTTCATTTTCATAGGCTTTGAAGGAAAAGGGAACCAAGCTTTCAAGCTTC ATTCAGAAGAACTTGAGCGTTGGTTCACAAAAATTGATCACATCTTTGGGCATACACGTGTACCGAAAATCGGAGAAGTTCTCACCCCATTTTACAAAAT TCATGTGGACAAAGAGCAACATCATCATCTTCCCTTAGTCAGTCAAATAAATTACAATTTTTCTGTTCATGCCATTCAGATGGGGGAAAAGGTTACTTCT ATCTTTGAGCATGCCATCAATTTTTTGGCTCGTAAGGATGACTTGACTGATAACAGGGATGACAAGGATGTCCTTTGGCAAGTTGATATGGATGTGATGG ATGCTCTTTTCACCAGTCTCGTTGACTACCTTCAACTTGACAATGCATATAACGTTTTCATTTTGAATCCCAAGCATGACTTAAAGAGGGCTAGATATGG CTACAGGAGAGGTTTGTCAGAGTCAGAAATAACATTTCTTAAAGAGAATAAGAGCTTGCAAACAAAAATTCTTCAGTCAGGAGGTGTTTCAGAAAGTGTA CTTGTACTTGATAAGATTAAGAGACCTCTGTATGAAAAGCATCCTATGACCAAGTATGCCTGGACGATGACTGAAGAAACTGATACAGTGGAATGGTACA ATCTTTGCCTGGATGCGTTGAACAATGCTGAGAAGTTATATAAAGGGAAGGACACTTCTGATATCATTCAGAATAAAGTTTTACAATTATTGAAAGGGAA GAATGAGGATATGGAGCTTTTCTTTGGAAAAGAGTTAAAATCCGGGGACTTCAGTGATTTTTCTGCGGAGTGCCTTACAGATACATGGATTGGAAAGGAC AGGTGGGCCTTTATTGATTTAACCGCTGGCCCCTTTTCATGGGGTCCTGCTGTTGGTGGAGAAGGTGTGCGCACAGAGCTTAGTTTGCCAAATGTGCAGA AAACTATTGGTGCAGTAGCAGAGATTTCAGAAGATGAAGCTGAAGAGCGTTTGCAAGAAGCAATTCAGGAAAAGTTTTCAGTATTTGGTGATAAGGATCA TCAGGCCATCGATATTCTTTTGGCTGAGATTGACATTTATGAGCTTTTTGCTTTCAAGCACTGCAAGGGAAGGAGAACTAAGCTAGCTCTATGTGAAGAG CTTGATGAGAGAATGCATGATTTGAAAAATGAGCTTCAGTCTCTCGATGGTGAAGAGAATGATGAAAGTCATAAGAAAAAGGCCATAGAGGCATTAAAAC GAATGGAGAGTTGGAATCTTTTCAGTGATACCCATGAGCCGGAGTTTCGAAACTACACAGTTGCAAGGGATACTTTTCTTGCACATTTGGGTGCAACCCT TTGGGGGTCTATGAGACACATAATCTCACCTTCACTATCTGATGGAGCATTCCACTATTATGAGAAGATATCCTTTCAGTTGTTTTTCGTCACACATGAG AAAGTTAGGAATGTTAAACATCTACCTGTTGATCTCAAGGCTCTAAAGAATGGGCTATCCTCCTTGCTGGTATCCTCACAAAAGGCTATGTTCAGTGAGA ATCTGGTAGTACTTTCAGAGGATCCTGCATTAGCGATGGCCTTTTCAGTGGCTAGGCGAGCAGCAGCTGTCCCATTATTGCTTGTTAATGGAACATATAG GAAAACCACTCGGTCCTATCTTGACTCTTCCATTCTCCAGCATCAGTTGCAGAGACAGCTCCATGACCGTGGCTCTCTCAAAGGAGTACATGCCCATAGT ATGTCCACGCTTGAAGTTCCTATCTTTTGGTTCATTTCTGGCGAGCCACTATTAGTTGACAAGCATTATCAGGCAAAGGCTCTTTCTGACATGGTTATTG TGGTCCAGTCAGAACCATCATCATGGGAAAGCCATCTGCAGTGTAATGGGCAATCAGTTTTGTGGGATCTGAGGAGGCCTGTAAAAGCTGCATTGGCCGC TGTCTCTGAACATCTGGCTGGTTTACTTCCCCTCCATCTTGTCTACAGCCATGCCCATGAAACTGCGATTGAGGATTGGGTTTGGTCGGTGGGATGCAAT CCTTTTTCAATCACTTCTCAAGGCTGGCATGTTTCACAGTTTCAGTCTGATACAATTGCTCGAAGCTACATCATCACAGCGCTTGAAGATTCAATACAAC TGGTCAATTCAGCTGTTCGCCGTCTACTGATGGAACGCACATCTGAGAAGACCTTCAAAATGTTTCAGTCTGAGGAGCGAGAACTTGTGGACAAGTATAA TTATGTTGTTAGTCTTTGGAGAAGGATTTCAACTATCCATGGAGAACTGCGTTACATGGATGCTATGAGATTTCTTTATACCCTAGAGGATGCATCTGAA AGGTTTGCTAGTCAAGTGAATGCAACTATAGCCATTCTTCACCCAATTCACTGCACGAGAGAGAGAAAAGTACATGTGGTGATTGACATGACAACAGTTC CTGCCTTCTTGGTTGTTCTTGGTGTTCTTTATATAGTTCTAAAGCCTAGACGACCAAAACCCAAGATTAATTAA
AA sequence Show only first row Show all	>Potri.018G150600.6 pacid=42800493 polypeptide=Potri.018G150600.6.p locus=Potri.018G150600 ID=Potri.018G150600.6.v4.1 annot-version=v4.1 MGVDQSTASFRFITITSAFLTLLIATGSYGSPSGTRKTGKSSSSSSSSSSSSVFSLFNLKEKSRFWSESVIHSGDFDDLESLSPAKMGARNFTNAGNIAN YLKLQEVDSMYLPVPVNFIFIGFEGKGNQAFKLHSEELERWFTKIDHIFGHTRVPKIGEVLTPFYKIHVDKEQHHHLPLVSQINYNFSVHAIQMGEKVTS IFEHAINFLARKDDLTDNRDDKDVLWQVDMDVMDALFTSLVDYLQLDNAYNVFILNPKHDLKRARYGYRRGLSESEITFLKENKSLQTKILQSGGVSESV LVLDKIKRPLYEKHPMTKYAWTMTEETDTVEWYNLCLDALNNAEKLYKGKDTSDIIQNKVLQLLKGKNEDMELFFGKELKSGDFSDFSAECLTDTWIGKD RWAFIDLTAGPFSWGPAVGGEGVRTELSLPNVQKTIGAVAEISEDEAEERLQEAIQEKFSVFGDKDHQAIDILLAEIDIYELFAFKHCKGRRTKLALCEE LDERMHDLKNELQSLDGEENDESHKKKAIEALKRMESWNLFSDTHEPEFRNYTVARDTFLAHLGATLWGSMRHIISPSLSDGAFHYYEKISFQLFFVTHE KVRNVKHLPVDLKALKNGLSSLLVSSQKAMFSENLVVLSEDPALAMAFSVARRAAAVPLLLVNGTYRKTTRSYLDSSILQHQLQRQLHDRGSLKGVHAHS MSTLEVPIFWFISGEPLLVDKHYQAKALSDMVIVVQSEPSSWESHLQCNGQSVLWDLRRPVKAALAAVSEHLAGLLPLHLVYSHAHETAIEDWVWSVGCN PFSITSQGWHVSQFQSDTIARSYIITALEDSIQLVNSAVRRLLMERTSEKTFKMFQSEERELVDKYNYVVSLWRRISTIHGELRYMDAMRFLYTLEDASE RFASQVNATIAILHPIHCTRERKVHVVIDMTTVPAFLVVLGVLYIVLKPRRPKPKIN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G58100			unknown protein		Potri.018G150600 [exp]	0	1
AT3G08960			ARM repeat superfamily protein...		Potri.016G119900 [exp]	1.00	0.8443
AT3G10380		SEC8, ATSEC8	subunit of exocyst complex 8 (...		Potri.008G035300 [exp]	2.82	0.8182
AT5G02410		ALG10	homolog of yeast ALG10, DIE2/A...		Potri.006G084800 [exp]	2.82	0.7574
AT3G13530		MAPKKK7, MAP3KE...	MAP3K EPSILON PROTEIN KINASE, ...		Potri.005G094200 [exp]	3.74	0.7633
AT5G03730		AtCTR1, SIS1, C...	SUGAR-INSENSITIVE 1, CONSTITUT...		Potri.016G095750 [exp]	3.87	0.7703
AT1G12470			zinc ion binding (.1)		Potri.013G147600 [exp]	5.74	0.7882
AT5G17440			LUC7 related protein (.1)		Potri.013G084800 [exp]	7.21	0.7444
AT5G19660		ATSBT6.1 ,ATS1P	SITE-1 protease (.1)		Potri.018G081400 [exp]	8.48	0.7766
AT3G44370			Membrane insertion protein, Ox...		Potri.009G121800 [exp]	14.28	0.7446
AT3G53760		ATGCP4	GAMMA-TUBULIN COMPLEX PROTEIN ...		Potri.014G128400 [exp]	14.42	0.7280

Compare expression of checked genes

Potri.018G150600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.