Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13050 483 / 2e-167 AtNiaP nicotinate transporter, Major facilitator superfamily protein (.1) AT3G20660 96 / 6e-21 4-Oct, ATOCT4 organic cation/carnitine transporter4 (.1) AT1G79360 77 / 9e-15 2-Oct, ATOCT2 ORGANIC CATION TRANSPORTER 2, organic cation/carnitine transporter 2 (.1) AT1G16370 74 / 1e-13 6-Oct, ATOCT6 ARABIDOPSIS THALIANA ORGANIC CATION/CARNITINE TRANSPORTER 6, organic cation/carnitine transporter 6 (.1) AT1G73220 70 / 2e-12 1-Oct, ATOCT1 organic cation/carnitine transporter1 (.1) AT1G79410 67 / 1e-11 5-Oct, ATOCT5 organic cation/carnitine transporter5 (.1) AT1G16390 65 / 7e-11 3-Oct, ATOCT3 organic cation/carnitine transporter 3 (.1) AT2G16120 64 / 1e-10 ATPMT1, AtPLT1 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 1, polyol/monosaccharide transporter 1 (.1) AT2G16130 63 / 2e-10 ATPMT2, AtPLT2 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 2, polyol/monosaccharide transporter 2 (.1) AT2G20780 62 / 6e-10 AtPLT4 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G000800 [exp] 511 / 1e-177 AT3G13050 597 / 0.0 nicotinate transporter, Major facilitator superfamily protein (.1) Potri.007G003100 [exp] 509 / 2e-177 AT3G13050 555 / 0.0 nicotinate transporter, Major facilitator superfamily protein (.1) Potri.007G003000 [exp] 503 / 4e-175 AT3G13050 597 / 0.0 nicotinate transporter, Major facilitator superfamily protein (.1) Potri.018G151700 [exp] 452 / 7e-153 AT3G13050 294 / 2e-91 nicotinate transporter, Major facilitator superfamily protein (.1) Potri.011G130533 [exp] 97 / 3e-21 AT3G20660 708 / 0.0 organic cation/carnitine transporter4 (.1) Potri.010G174400 [exp] 88 / 2e-18 AT1G16390 627 / 0.0 organic cation/carnitine transporter 3 (.1) Potri.004G152300 [exp] 65 / 6e-11 AT3G18830 625 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.004G151725 [exp] 64 / 1e-10 AT3G18830 640 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.010G174300 [exp] 62 / 4e-10 AT1G79360 447 / 5e-153 ORGANIC CATION TRANSPORTER 2, organic cation/carnitine transporter 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027577 [exp] 569 / 0 AT3G13050 504 / 1e-175 nicotinate transporter, Major facilitator superfamily protein (.1) Lus10008555 [exp] 560 / 0 AT3G13050 499 / 7e-174 nicotinate transporter, Major facilitator superfamily protein (.1) Lus10018992 [exp] 504 / 1e-175 AT3G13050 464 / 2e-160 nicotinate transporter, Major facilitator superfamily protein (.1) Lus10033337 [exp] 456 / 9e-157 AT3G13050 508 / 2e-177 nicotinate transporter, Major facilitator superfamily protein (.1) Lus10043061 [exp] 462 / 2e-153 AT3G13050 522 / 1e-176 nicotinate transporter, Major facilitator superfamily protein (.1) Lus10033336 [exp] 423 / 6e-144 AT3G13050 485 / 2e-168 nicotinate transporter, Major facilitator superfamily protein (.1) Lus10027576 [exp] 338 / 8e-113 AT3G13050 293 / 6e-96 nicotinate transporter, Major facilitator superfamily protein (.1) Lus10035704 [exp] 335 / 1e-110 AT3G13050 378 / 1e-127 nicotinate transporter, Major facilitator superfamily protein (.1) Lus10037295 [exp] 323 / 9e-106 AT3G13050 363 / 1e-121 nicotinate transporter, Major facilitator superfamily protein (.1) Lus10013330 [exp] 103 / 3e-23 AT3G20660 611 / 0.0 organic cation/carnitine transporter4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF07690 [poplar] [flax] MFS_1 Major Facilitator Superfamily
Representative CDS sequence Show only first row Show all	>Potri.018G150700.5 pacid=42801123 polypeptide=Potri.018G150700.5.p locus=Potri.018G150700 ID=Potri.018G150700.5.v4.1 annot-version=v4.1 ATGCCGGTGATTGAAGCTGAGAGTTCCATCGGGGTCAGGGGGATGGATGATGAAGCCCCTGCATACACTTTGGATGAGGCACTTGCCTGTTTGGGGTTCG GGAAATTCCAAGGTCTGGTGCTTGCCTATGCTGGTCTTGGTTGGTTTGCAGAAGCAATGGAGCTTATGCTTCTCTCTTTTGTTGGTCCAACTGTTAAGTC CCAGTGGGGACTCTCCTCAGGCCAAGAGAGTCTGTTATCAACAGTTGTATTTGCTGGCATGCTTGTTGGAGCTTATTCTTGGGGCCTTGTTTCAGATAAC TGTGGAAGGAGGAAGGGTTTCCTAGGAATTGCTGTGCTGACTAGTGGAGCTGGACTATTGAGTGCTTTCTCCCCAAATTATGAATCTTTGGTGATAATTC GTTGTTTGGTTGGCTTAGGCCTGGGTGGTTCAACTGTACTCTGCTCCTGGTTTCTAGAGTTTGTTCCTGCTCCACACAGAGGGAAATGGATGGTTGTCTT CTCAACTTTCTGGACATTGGGTGCAATTTTTGAGGCTTCACTTGCATGGGTGGAAATTCTTCTCTTTTGGCAGCTTGTCATGCAAAGATTGAGTTGGAGG TGGCTACTTGCATTCTCTTCTCTACCATCAATTGCTCTTCTTCTCTTTTATGGTATTGTACCAGAATCTCCAAGGTATCTATGCATGAAAGGAAGAATAA ATGATGCACATAAAATTCTGCAAAAGATAGCTCTTCTGAACCAATCTGAACTTCCTCCTGGGATGCTTGTTCCTGATAGTACAGTCGGACAGGAAGAAAA ATCTGCCCCATCAAAATATACTCCTCTACTATCTTCAACCAGAAAAGTGATTGTAGATTTTAAATCTGTCTTTTCATCATTTTTCATGCTTTTTTCATCG ACATTAATTCAAACAACACTGCTCCTATGGGTCTTACTATTTGGAAATGTATTTTCGTATTATGGTATCATACTGCTGACCTCAGAGCTAAGTAGTCAGC AAGGCAAATGTGGCTCGACTATCTTGAGCTCAGAAAATCTCCAGAATGACAGCCTCTACATAAATGTGTTTGTTACTAGTTTGGCAGAGCTTCCTGGGCT GCTTTTATCTGCAATTATCGTGGATAGACTTGGCCGCAAGCTTTCCATGGCCCTTATGCTTGTATTGGGTTGCATTTTTCTTTTTCCATTGCTTTTCAAT GTGTCTGCAAATCTGACAACAGCAATGTTATTTGGAGCTCGCATGTGTGTCATGGGATCTTTCACAATTGCTACATTATATGCCCCGGAGTTATATCCTA CAGCAGTGAGGGCAACTGGTGCTGGAGTGGCAAGTTCAGTGGGGAGGATTGGTGGCATGATATGCCCTCTGGTGGCGGTTGGACTGGTGACTGGTTGCTA TCTTACAGAAGCTATCATTCTATTTGAGGTTGTGATGGCTATTTCTGCATTCAGCTCTCTGCTCTTCCCGTTTGAAACCAAGGGACAGGAGTTGAGTGAC AGTGTAGATCATGTATCTGATTCAACACAAGTTGCTTCTTTTCGGTAG
AA sequence Show only first row Show all	>Potri.018G150700.5 pacid=42801123 polypeptide=Potri.018G150700.5.p locus=Potri.018G150700 ID=Potri.018G150700.5.v4.1 annot-version=v4.1 MPVIEAESSIGVRGMDDEAPAYTLDEALACLGFGKFQGLVLAYAGLGWFAEAMELMLLSFVGPTVKSQWGLSSGQESLLSTVVFAGMLVGAYSWGLVSDN CGRRKGFLGIAVLTSGAGLLSAFSPNYESLVIIRCLVGLGLGGSTVLCSWFLEFVPAPHRGKWMVVFSTFWTLGAIFEASLAWVEILLFWQLVMQRLSWR WLLAFSSLPSIALLLFYGIVPESPRYLCMKGRINDAHKILQKIALLNQSELPPGMLVPDSTVGQEEKSAPSKYTPLLSSTRKVIVDFKSVFSSFFMLFSS TLIQTTLLLWVLLFGNVFSYYGIILLTSELSSQQGKCGSTILSSENLQNDSLYINVFVTSLAELPGLLLSAIIVDRLGRKLSMALMLVLGCIFLFPLLFN VSANLTTAMLFGARMCVMGSFTIATLYAPELYPTAVRATGAGVASSVGRIGGMICPLVAVGLVTGCYLTEAIILFEVVMAISAFSSLLFPFETKGQELSD SVDHVSDSTQVASFR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G13050		AtNiaP	nicotinate transporter, Major ...		Potri.018G150700 [exp]	0	1
AT4G27190			NB-ARC domain-containing disea...		Potri.019G036875 [exp]	1.41	0.8986
AT5G01720			RNI-like superfamily protein (...		Potri.006G105400 [exp]	3.16	0.8763
AT5G26600			Pyridoxal phosphate (PLP)-depe...		Potri.013G002400 [exp]	3.46	0.8740
AT5G13020		AtEML3, ACK1	EMSY-like 3, Emsy N Terminus (...		Potri.009G022900 [exp]	4.00	0.8684
AT2G25180	GARP	ARR12	response regulator 12 (.1)		Potri.018G021300 [exp]	4.24	0.8594	ARR12.2
AT1G78060			Glycosyl hydrolase family prot...		Potri.005G168400 [exp]	7.41	0.8626
AT1G09060			Zinc finger, RING-type;Transcr...		Potri.013G019000 [exp]	10.48	0.8439
AT3G14470			NB-ARC domain-containing disea...		Potri.019G036850 [exp]	11.22	0.8580
AT3G63130		ATRANGAP1, RANG...	RAN GTPASE-ACTIVATING PROTEIN ...		Potri.002G052900 [exp]	11.66	0.8287	Pt-RANGAP1.2
AT5G04940		SUVH1	SU(VAR)3-9 homolog 1 (.1), SU(...		Potri.019G087900 [exp]	12.00	0.8476	SDG907,SUVH3.1

Compare expression of checked genes

Potri.018G150700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.