Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G62440 533 / 0 LRX2 leucine-rich repeat/extensin 2 (.1) AT1G12040 530 / 0 LRX1 leucine-rich repeat/extensin 1 (.1) AT3G24480 453 / 1e-155 Leucine-rich repeat (LRR) family protein (.1) AT4G13340 451 / 3e-151 LRX3 leucine-rich repeat/extensin 3, Leucine-rich repeat (LRR) family protein (.1) AT4G18670 444 / 3e-147 Leucine-rich repeat (LRR) family protein (.1) AT4G33970 417 / 1e-138 Leucine-rich repeat (LRR) family protein (.1) AT3G22800 408 / 4e-138 Leucine-rich repeat (LRR) family protein (.1) AT1G49490 418 / 2e-137 Leucine-rich repeat (LRR) family protein (.1) AT3G19020 414 / 9e-135 Leucine-rich repeat (LRR) family protein (.1) AT5G25550 390 / 1e-131 Leucine-rich repeat (LRR) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G081200 [exp] 734 / 0 AT1G62440 553 / 0.0 leucine-rich repeat/extensin 2 (.1) Potri.006G158814 [exp] 459 / 6e-157 AT3G24480 614 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.018G075900 [exp] 452 / 1e-152 AT3G24480 603 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.006G245600 [exp] 427 / 2e-144 AT3G24480 516 / 3e-180 Leucine-rich repeat (LRR) family protein (.1) Potri.014G036700 [exp] 409 / 8e-137 AT2G15880 502 / 1e-170 Leucine-rich repeat (LRR) family protein (.1) Potri.010G083000 [exp] 400 / 9e-136 AT3G22800 477 / 7e-167 Leucine-rich repeat (LRR) family protein (.1) Potri.004G146350 [exp] 410 / 1e-134 AT2G15880 600 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.010G083100 [exp] 391 / 6e-133 AT3G22800 447 / 2e-156 Leucine-rich repeat (LRR) family protein (.1) Potri.009G108100 [exp] 412 / 7e-132 AT3G19020 567 / 0.0 Leucine-rich repeat (LRR) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028097 [exp] 513 / 5e-178 AT1G62440 466 / 7e-157 leucine-rich repeat/extensin 2 (.1) Lus10017727 [exp] 442 / 4e-148 AT3G24480 611 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Lus10039362 [exp] 394 / 5e-134 AT3G22800 416 / 2e-143 Leucine-rich repeat (LRR) family protein (.1) Lus10037905 [exp] 387 / 3e-130 AT4G13340 432 / 9e-149 leucine-rich repeat/extensin 3, Leucine-rich repeat (LRR) family protein (.1) Lus10021001 [exp] 382 / 1e-125 AT3G19020 490 / 1e-165 Leucine-rich repeat (LRR) family protein (.1) Lus10012047 [exp] 375 / 2e-122 AT3G19020 508 / 6e-172 Leucine-rich repeat (LRR) family protein (.1) Lus10040566 [exp] 372 / 3e-122 AT1G12040 386 / 2e-124 leucine-rich repeat/extensin 1 (.1) Lus10041190 [exp] 365 / 5e-122 AT3G22800 421 / 3e-145 Leucine-rich repeat (LRR) family protein (.1) Lus10039363 [exp] 366 / 4e-120 AT3G22800 447 / 1e-152 Leucine-rich repeat (LRR) family protein (.1) Lus10033672 [exp] 359 / 7e-120 AT4G28380 488 / 6e-173 Leucine-rich repeat (LRR) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.018G151000.2 pacid=42800825 polypeptide=Potri.018G151000.2.p locus=Potri.018G151000 ID=Potri.018G151000.2.v4.1 annot-version=v4.1 ATGCCTCCTCCTCGCTCCTTCTTGATTCTTTTCTTGCTTGTTTCCACTCCCTCTTTCCTCTTCCAGATCTCCTCTGCGGCCCATGAAGATGGAGATCATG ATATAAACGTAGATTCAACCCTCAAGTTCGAGAACCCTCGGATCCGCCGAGCCTACATTGCCTTGCAGTCATGGAAGCAAGCCATCTTTTCAGACCCATT CAACTTCACAGCCAATTGGAATGGCTCAGACGTGTGTTCTTACATGGGAGTCTTCTGTGCTCCATCTCCCAAAAACAAGAAAATAAGGGTGGTGGCTGGC ATTGACCTCAACCACGCTGACATTGCTGGCTACCTCCCTACCGAGCTCGGCCTTATCATCGATCTGGCGCTCCTCCATATCAACTCCAACAGATTCTGTG GGGTCGTACCCAGTAGTTTCCGCAAAATGAAGCTGCTCCATGAGCTGGACCTGAGCAACAATCGGCTAATGGGCAAATTTCCCAAGGTTGTGGTCTCCTT GCCTTCCCTCAAGTACCTGGATCTGCGCTTTAACGAGTTTGAAGGTTCTGTGCCCTCCCAGCTCTTTGACAAGCCCCTTGATGCTATCTTCTTGAATGAC AATAGGTTCCGATTTGGCATCCCAGAGAATCTTGGAAACTCTTCTGCATCTGTTCTTGTCCTTGCAAACAACAACCTTGGTGGGTGTATTCCAGGCAGCA TTGGGAAGATGAGCAAAACCTTAAATGAAATCATTCTCATGAATGACAATCTCACTGGGTGTTTGCCTCCCCAGATCGGCATGCTCAAGGAAGTAACTGT GTTTGACGTTAGCTTCAATCATCTGCAAGGCGCTCTACCTTCCAGCATTGGAAACATGAAGAGTGTCGAGCAACTCGACATTGCACACAACAGTTTCACA GGTGTTGTTCCTGCTAGTGTTTACCAGCTGCCTAATTTGCAAAATTTTACCTACTCTTTCAACTATTTCACCGGCGAAGCTCCAAGCTGTGCTGCTATTG GAGCAGTCTCTAATGGTACCCAGAATTGCATTCCCGGCAAGATGAATCAGAGATCAGCCAAACAATGTTCTTCTGAAGCTGCTCGCCCTGTTGACTGCAG CAAGTTCAAATGCGGTGGCAGTGGCGGAGGTGGCGGAAATGGCTCTCCATTAACACCACCACCACAGACAAGGAGAGGTATTCCGGTTGGAAGGCCAGCA CCAAATCCTGCACCCATCAGAAAGCCATTTGTTGCATCACCACCACCTCCCACTTCCAAGTCATCACCTTCCACCAGATCACACCCGCCACCACCTCCCA CAAGGTCTTTCCATCCACCACCATCTCCACATTTTGCATCCCCACCACCGCCTACTAAAAAAGCATCACCCAGAACACACCTTCCACCCCCACCCCCACC TGTTGAACAACAGCCACCAACTTATCACCATATACCGCCGCCGCCACCTCCTCCTCCTCCACCCAACCATTACCGTTCTCATTATGCACCACGACCACCT ATAAAAAAGGTTTCAACAGGCACACGTCGCCATGTACCACCACCTCCACCATCAAGTGTAAACAGGCCTCAGGTGCCTAAATATAAACCCCCACCGCCCC CACCACCCTACTAA
AA sequence Show only first row Show all	>Potri.018G151000.2 pacid=42800825 polypeptide=Potri.018G151000.2.p locus=Potri.018G151000 ID=Potri.018G151000.2.v4.1 annot-version=v4.1 MPPPRSFLILFLLVSTPSFLFQISSAAHEDGDHDINVDSTLKFENPRIRRAYIALQSWKQAIFSDPFNFTANWNGSDVCSYMGVFCAPSPKNKKIRVVAG IDLNHADIAGYLPTELGLIIDLALLHINSNRFCGVVPSSFRKMKLLHELDLSNNRLMGKFPKVVVSLPSLKYLDLRFNEFEGSVPSQLFDKPLDAIFLND NRFRFGIPENLGNSSASVLVLANNNLGGCIPGSIGKMSKTLNEIILMNDNLTGCLPPQIGMLKEVTVFDVSFNHLQGALPSSIGNMKSVEQLDIAHNSFT GVVPASVYQLPNLQNFTYSFNYFTGEAPSCAAIGAVSNGTQNCIPGKMNQRSAKQCSSEAARPVDCSKFKCGGSGGGGGNGSPLTPPPQTRRGIPVGRPA PNPAPIRKPFVASPPPPTSKSSPSTRSHPPPPPTRSFHPPPSPHFASPPPPTKKASPRTHLPPPPPPVEQQPPTYHHIPPPPPPPPPPNHYRSHYAPRPP IKKVSTGTRRHVPPPPPSSVNRPQVPKYKPPPPPPPY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G62440		LRX2	leucine-rich repeat/extensin 2...		Potri.018G151000 [exp]	0	1
AT5G66680		DGL1	DEFECTIVE GLYCOSYLATION, dolic...		Potri.004G157900 [exp]	1.00	0.9429
AT1G62440		LRX2	leucine-rich repeat/extensin 2...		Potri.006G081200 [exp]	2.82	0.9317
AT1G14320		RPL10A, RPL10, ...	SUPPRESSOR OF ACAULIS 52, ribo...		Potri.013G159301 [exp]	4.58	0.9322
AT1G78060			Glycosyl hydrolase family prot...		Potri.005G168500 [exp]	5.00	0.8827
AT3G21200		PGR7	proton gradient regulation 7 (...		Potri.008G008801 [exp]	5.09	0.8979
AT1G80350		FTR, FRC2, FRA2...	KATANIN 1, FAT ROOT, FURCA2, F...		Potri.017G013601 [exp]	7.07	0.9278
AT3G55280		RPL23A2, RPL23A...	RIBOSOMAL PROTEIN L23A2, ribos...		Potri.006G213300 [exp]	8.94	0.9086
AT4G22190			unknown protein		Potri.006G270100 [exp]	11.83	0.8963
AT1G16780		AtVHP2;2, AVPL1	Inorganic H pyrophosphatase fa...		Potri.008G003502 [exp]	12.84	0.8950
					Potri.003G024966 [exp]	15.68	0.8421

Compare expression of checked genes

Potri.018G151000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.