Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58130 184 / 1e-49 ROS3 REPRESSOR OF SILENCING 3, RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040568 [exp] 215 / 4e-61 AT5G58130 213 / 1e-59 REPRESSOR OF SILENCING 3, RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10040584 [exp] 215 / 4e-61 AT5G58130 213 / 1e-59 REPRESSOR OF SILENCING 3, RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10028101 [exp] 109 / 5e-25 AT5G58130 94 / 6e-20 REPRESSOR OF SILENCING 3, RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description
Representative CDS sequence Show only first row Show all	>Potri.018G151300.1 pacid=42802010 polypeptide=Potri.018G151300.1.p locus=Potri.018G151300 ID=Potri.018G151300.1.v4.1 annot-version=v4.1 ATGGTGGAGGCTAGGATAGTAATTAGCAAACAAAACAAAGGAGGGGGGACTAAGAAGATGAAGATGAATGGAGCCGCACCCGCAGCCGCACCCGCAGCAG CAGCAGCAGAAGAAGAAGAAGAAGAAGCAGTGATAAGGATATTCGTGGGAGGATTGGGGGAGAGCGTGAGCAGCGAAGACCTGCGCAACATATTTTCATC AAATAAGAGTTTGGGCTTAGGGATTCAATCAGTGGAGATCATCAGAAGCAAAGGCCGATCCTTTGCGTATATCGACTTCTTCTCTTCTTCCAACAACTCC CTCTCCAAGCTCTTCAACACTTATAATGGGTGTGCTTGGAAGGGTGGGAAGCTTAGGCTTGAGAAGGCCAAAGAGCATTATCTTGCTCGCTTGACATGTG AATGGGCTCAAGATCAAGATGAAGATCAACATCCTCTCCTTCCCACTCCTAATCTTGATCATGCTCAAGATGATCCCACCAACAAGAAACTGTCCATTTC TTCAAAGCCCAGCAACAAAGAGCTTCTTTCAGAAAATAAGCAACTTCGCCTCTTCTTCCCCGGATTAGGAAAGATAAAGTCAATACCTTTTAGAGGAACT GGCAAACACAGATACAGTTTCAGACGTGTTGAAGTTCCTCCACTTCCCAAGCATTTCTGTGATTGTGAAGAACACTCGGAGCCTCCTGCAGCTGCAGCTA AATGCAGACACATTCCTATCATGGAAGAACAGGGTGCTGGGATGGACAAGGAAGAACTCACTTTGATGAATTCTGTGATGAATAAGCTCTTTCAGATGGA AAATGTTTCAGACAATGCATGCTGTGAGATTGAATTGGATAAGAAAGTAGATGATTCCATGAAAACCACTGATAAACCACCACTTGAAGAGAATGAAGGG GACATCGATGAAGATGATGATAACCTCATAATTAACATGGTGAGTGTACCACAGGAAACCATATTAACTCATCAGAGACGAAGATTCAATGTTAGGCAAA CTTCGACAGATGAACCGACTCAAAAGGTGCTCCAAAAGCAGAAAAGAAACACTACACCTTCTAATAAGAAGAGGAAAATAGTTCTCAATGAAGAAAGTAA TACAAGTGAAGGAATGCCTGCTATGCCGGGAGGTAATGGGAGTTTGCTGGAACAGCAATCCAAATCTGACAATGCATCAGAAACACTGCCGGGACATTCA TCTAGCAAGGAAGAGCAACCCAAATGTGATAAAGTCGCCGACTCTAGGGACAGTGAGAACAATAAATCCTGGAAGCAAGAAAATCAAAATGAACATTTCA GCAGGATCAAAGAAGTGGGAGGGCACAAGGAGGCTCTGTCTACCAAACTGGATTCTGCTTCAAATAAGCCAGGCAGAGGTTATGCATGGCTCAATAAATC CTCATGGACACAATTGGTTAGTGGGAATAACAGCAATGCTTTCAGTATTACTCATATCTTGCCGGGTGTTACTTTTGCAAAGGTAGAGCCATCAAAACCT GATGGGTTGGAAGTTCCCAGTTCTATGAAAAGCATGCATGGTGATATATTTAAGAAGAGCAATATTGTTCCTACCGTAGATGGCACGCTGGCTTTTGGGG TCAGAAAGGAGGGTAATGTACAAAATAGAGTGGCAATGAGCCCGCAGACTGTTGTAGGCAATGCTGAGGCTTCTGCTCCAGTAGTGGAGAAGAAAACCAA TTCAGAGACGAAGCCAGCATATACCAGAGATGTTTCCATTGGAGAAACTTGTTCATTCATGAGGACTGCTGATTCAGTGAAAGAATGGGCGCGGACCAAA GCAGCTCTAAGCGGATCCCGCAAGAGAAAAAACAATGAGAAGTAG
AA sequence Show only first row Show all	>Potri.018G151300.1 pacid=42802010 polypeptide=Potri.018G151300.1.p locus=Potri.018G151300 ID=Potri.018G151300.1.v4.1 annot-version=v4.1 MVEARIVISKQNKGGGTKKMKMNGAAPAAAPAAAAAEEEEEEAVIRIFVGGLGESVSSEDLRNIFSSNKSLGLGIQSVEIIRSKGRSFAYIDFFSSSNNS LSKLFNTYNGCAWKGGKLRLEKAKEHYLARLTCEWAQDQDEDQHPLLPTPNLDHAQDDPTNKKLSISSKPSNKELLSENKQLRLFFPGLGKIKSIPFRGT GKHRYSFRRVEVPPLPKHFCDCEEHSEPPAAAAKCRHIPIMEEQGAGMDKEELTLMNSVMNKLFQMENVSDNACCEIELDKKVDDSMKTTDKPPLEENEG DIDEDDDNLIINMVSVPQETILTHQRRRFNVRQTSTDEPTQKVLQKQKRNTTPSNKKRKIVLNEESNTSEGMPAMPGGNGSLLEQQSKSDNASETLPGHS SSKEEQPKCDKVADSRDSENNKSWKQENQNEHFSRIKEVGGHKEALSTKLDSASNKPGRGYAWLNKSSWTQLVSGNNSNAFSITHILPGVTFAKVEPSKP DGLEVPSSMKSMHGDIFKKSNIVPTVDGTLAFGVRKEGNVQNRVAMSPQTVVGNAEASAPVVEKKTNSETKPAYTRDVSIGETCSFMRTADSVKEWARTK AALSGSRKRKNNEK

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G58130		ROS3	REPRESSOR OF SILENCING 3, RNA-...		Potri.018G151300 [exp]	0	1
AT3G16520		UGT88A1	UDP-glucosyl transferase 88A1 ...		Potri.017G150100 [exp]	1.41	0.8826
AT3G01860			unknown protein		Potri.001G332500 [exp]	2.23	0.8592
AT3G20770	EIL	AtEIN3, EIN3	ETHYLENE-INSENSITIVE3, Ethylen...		Potri.004G197400 [exp]	3.00	0.8523	Pt-EIN3.1
AT3G45880			2-oxoglutarate (2OG) and Fe(II...		Potri.009G025400 [exp]	4.00	0.8742
AT4G23010		ATUTR2, UTR2	UDP-galactose transporter 2 (....		Potri.003G121000 [exp]	4.00	0.8661
AT3G27010	TCP	ATTCP20, PCF1, ...	ARABIDOPSIS THALIANA TEOSINTE ...		Potri.001G060000 [exp]	4.89	0.8570
AT1G79870			D-isomer specific 2-hydroxyaci...		Potri.013G046150 [exp]	5.19	0.8697
AT1G34770			unknown protein		Potri.005G164300 [exp]	6.00	0.8340
AT1G14740			Protein of unknown function (D...		Potri.008G138100 [exp]	10.24	0.8382
AT5G48820		ICK6, KRP3	KIP-RELATED PROTEIN 3, inhibit...		Potri.001G314000 [exp]	11.09	0.8169

Compare expression of checked genes

Potri.018G151300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.