Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13050 294 / 1e-91 AtNiaP nicotinate transporter, Major facilitator superfamily protein (.1) AT1G16370 71 / 1e-12 6-Oct, ATOCT6 ARABIDOPSIS THALIANA ORGANIC CATION/CARNITINE TRANSPORTER 6, organic cation/carnitine transporter 6 (.1) AT3G20660 64 / 2e-10 4-Oct, ATOCT4 organic cation/carnitine transporter4 (.1) AT1G79360 64 / 2e-10 2-Oct, ATOCT2 ORGANIC CATION TRANSPORTER 2, organic cation/carnitine transporter 2 (.1) AT1G16390 62 / 6e-10 3-Oct, ATOCT3 organic cation/carnitine transporter 3 (.1) AT1G73220 61 / 2e-09 1-Oct, ATOCT1 organic cation/carnitine transporter1 (.1) AT2G18480 59 / 7e-09 AtPLT3 Major facilitator superfamily protein (.1) AT1G79410 59 / 8e-09 5-Oct, ATOCT5 organic cation/carnitine transporter5 (.1) AT3G18830 59 / 8e-09 ATPMT5, AtPLT5 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) AT4G36670 56 / 5e-08 AtPMT6, AtPLT6 polyol/monosaccharide transporter 6, polyol transporter 6, Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G150700 [exp] 442 / 8e-149 AT3G13050 482 / 3e-167 nicotinate transporter, Major facilitator superfamily protein (.1) Potri.007G003100 [exp] 324 / 8e-103 AT3G13050 555 / 0.0 nicotinate transporter, Major facilitator superfamily protein (.1) Potri.007G003000 [exp] 320 / 2e-101 AT3G13050 597 / 0.0 nicotinate transporter, Major facilitator superfamily protein (.1) Potri.014G000800 [exp] 319 / 1e-100 AT3G13050 597 / 0.0 nicotinate transporter, Major facilitator superfamily protein (.1) Potri.010G174300 [exp] 75 / 6e-14 AT1G79360 447 / 5e-153 ORGANIC CATION TRANSPORTER 2, organic cation/carnitine transporter 2 (.1) Potri.010G174400 [exp] 74 / 2e-13 AT1G16390 627 / 0.0 organic cation/carnitine transporter 3 (.1) Potri.015G029400 [exp] 73 / 3e-13 AT1G73220 519 / 1e-180 organic cation/carnitine transporter1 (.1) Potri.011G130533 [exp] 70 / 4e-12 AT3G20660 708 / 0.0 organic cation/carnitine transporter4 (.1) Potri.007G027900 [exp] 64 / 2e-10 AT4G36670 638 / 0.0 polyol/monosaccharide transporter 6, polyol transporter 6, Major facilitator superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027577 [exp] 394 / 6e-130 AT3G13050 504 / 1e-175 nicotinate transporter, Major facilitator superfamily protein (.1) Lus10008555 [exp] 388 / 1e-127 AT3G13050 499 / 7e-174 nicotinate transporter, Major facilitator superfamily protein (.1) Lus10018992 [exp] 359 / 1e-116 AT3G13050 464 / 2e-160 nicotinate transporter, Major facilitator superfamily protein (.1) Lus10027576 [exp] 313 / 5e-101 AT3G13050 293 / 6e-96 nicotinate transporter, Major facilitator superfamily protein (.1) Lus10033337 [exp] 291 / 2e-90 AT3G13050 508 / 2e-177 nicotinate transporter, Major facilitator superfamily protein (.1) Lus10043061 [exp] 288 / 3e-85 AT3G13050 522 / 1e-176 nicotinate transporter, Major facilitator superfamily protein (.1) Lus10033336 [exp] 263 / 7e-80 AT3G13050 485 / 2e-168 nicotinate transporter, Major facilitator superfamily protein (.1) Lus10037295 [exp] 251 / 4e-76 AT3G13050 363 / 1e-121 nicotinate transporter, Major facilitator superfamily protein (.1) Lus10035704 [exp] 242 / 1e-72 AT3G13050 378 / 1e-127 nicotinate transporter, Major facilitator superfamily protein (.1) Lus10011995 [exp] 96 / 5e-22 ND 96 / 2e-22
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF00083 [poplar] [flax] Sugar_tr Sugar (and other) transporter
Representative CDS sequence Show only first row Show all	>Potri.018G151700.5 pacid=42801011 polypeptide=Potri.018G151700.5.p locus=Potri.018G151700 ID=Potri.018G151700.5.v4.1 annot-version=v4.1 ATGGATGATGAGGACCAGCTGGTGTACACTCTGGATGATGCCCTCGCTTCTGCGGGCTTTGGAAAATTCCAGTTTCTGGTGCTTGCTTATGCCGGTCTTG GTTGGTTTGCTGAAGCCATGGAAATTATGATCCTTTCCTTTGTGGGTCCTGCTGTCAAGTCCCAGTGGAATCTCTCCTCTACCCAGGAGAGTTTGCTCTC TACGGTTGTTTTTGCTGGCATGCTTGTTGGAGCTTATTCTTGGGGCCTTTTTTCTGATTACTGTGGAAGAAGAAAGGGTTTCCTAGGAATAACTATTATA ACCAGTGCAGCTGGATTTTTGAGTACTTTCTCCCCGAATTATGTATCATTGTTGATTCTCCGTTGTTTGGTTGGGGTTGGCCTGGGTGGTGGACCTGTAT TTTCCTCCTGGTTTCTAGAGTTTGTTCCGGCTTCACATAGAGGCACCTGGATGGTTGTCTTCTCAACTTTCTGGACATTCGGAACCATTTTTGAGGCTGC ACTTGCATGGATTGTCTTGCCTAGATTGAATTGGAGGTGGCTACTTGCATTCTCCTCTTTACCATCTATTGCCCAGCTTTTCTTTTATTGGATAGTACCA GAGTCTCCAAGGTACCTGTCCATGAAAGGAAGAATAACGGAGGCACATAATATTCTGGAGAAGATAGCTCAGCTGAACCAATCAAAACTTCCTCCTGGAA TGCTTGTTTCTGATAGTACAATTGGACTGGATGAAGAATCTGCCCCGTCAAAATATACACCTCTACTCTCCTCAACTAGAAATCTGGTTTCAGATTTTAA ATCAGGCTTCTCATCATTTGTTATGCTTTTCTCATCAAAGAAGGGTTTCCTAGGAGCAACTCTTCTGACTTGTGGAGCTGGATTGTTGAGTGCTTTCTCC CCAAATTATGCATCTCTGGTGATTCTTCGTTGTTTGGTTGGCTCCGGGCTGGGTGGTGGAAGTGTATTCAGCTCCTGGATTCTAGAGTTTGTTCCTGCTT CACATAGAGGAAAAAGGATGCTTCTACTCTCATGGTTCTGGGCATTTGGGACAATTTTTGAGGCTTTACTTGCATGGATGGTAATGCCAAGGTTGAGTTG GAGATGGCTACTCGCAGTATCCTGTTTACCAGCATTTGCCCTGCTTCTCTTTTATTCTCATGTACCAGAATCTCCAAGGTATCTATGCATGAAAGGCAGA ATAAATGATGCATATAATATTCTGGAGAAAATAGCTCTGCTCAACCAATCAAAACTCCCTCCCGGAGAGCTTGTTCCTGATAGTACAATTGGACTGGATG AAGAATCTGCAACATCAGAATATACCCCTCTCCTCTCCACCACTGAAAAAATGGATTTGGATTTTAGATCAGGATTCCAATCATTTCTTATGCTTTTCTC ATCAAAACTAATCCGAACAACACTTCTTCTCTGGGAGTTACTCTTTGGAAATGTATTCTCATATTATGGTATCATATTGCTGACTTCAGAGCTAAGTAGT GGGCAAAGCAGATGTGGCTCAAATCTCTTGAAATCAGAAAATCCTGACAGCCTCTACATAAATGTATTTATTTCTAATTTGGCAGAGCTTCCTGGGATTC TTTTGTCAGCAACTATTGTAGATAGAATTGGCCGCAAGCTTACGGTAGCTTTTACGTTTGTCTTGGCTGGTATCTTCCTTTTACCTCTGGTTTACCATCA GTCTGCAACATTAACGATGTCATTCTTGTTTGGAGCTCGAATGAGTACCAAAGCAGCCTACTCAGTTGCTACAATATATGTTCAGGAGTTATATCCGACA TCCGTCAGGGCAACAGGTGCTGGAGCTGCGAATGCTGCGGGGAAGGTTGGTGGCATGATATGTCCTCTTGTGGCGGTTGGCCTGGTGACTAGCTGCCAGA TTACAGAAGCCATCATCCTGTTTGAGGTCCTGATGGCTATTTCAGCAGTCTGTGTCATGTTCATCCCAGTTGATACCAAGGGACAGAAATTGTGCGACAG CATAGATGTATCTGATTCAAAACAGTTCAAGTCTCAGGAGTTGAAAATGTTCATCTCTTCTGCCGTTGAATACCTTTTGAGCTAA
AA sequence Show only first row Show all	>Potri.018G151700.5 pacid=42801011 polypeptide=Potri.018G151700.5.p locus=Potri.018G151700 ID=Potri.018G151700.5.v4.1 annot-version=v4.1 MDDEDQLVYTLDDALASAGFGKFQFLVLAYAGLGWFAEAMEIMILSFVGPAVKSQWNLSSTQESLLSTVVFAGMLVGAYSWGLFSDYCGRRKGFLGITII TSAAGFLSTFSPNYVSLLILRCLVGVGLGGGPVFSSWFLEFVPASHRGTWMVVFSTFWTFGTIFEAALAWIVLPRLNWRWLLAFSSLPSIAQLFFYWIVP ESPRYLSMKGRITEAHNILEKIAQLNQSKLPPGMLVSDSTIGLDEESAPSKYTPLLSSTRNLVSDFKSGFSSFVMLFSSKKGFLGATLLTCGAGLLSAFS PNYASLVILRCLVGSGLGGGSVFSSWILEFVPASHRGKRMLLLSWFWAFGTIFEALLAWMVMPRLSWRWLLAVSCLPAFALLLFYSHVPESPRYLCMKGR INDAYNILEKIALLNQSKLPPGELVPDSTIGLDEESATSEYTPLLSTTEKMDLDFRSGFQSFLMLFSSKLIRTTLLLWELLFGNVFSYYGIILLTSELSS GQSRCGSNLLKSENPDSLYINVFISNLAELPGILLSATIVDRIGRKLTVAFTFVLAGIFLLPLVYHQSATLTMSFLFGARMSTKAAYSVATIYVQELYPT SVRATGAGAANAAGKVGGMICPLVAVGLVTSCQITEAIILFEVLMAISAVCVMFIPVDTKGQKLCDSIDVSDSKQFKSQELKMFISSAVEYLLS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G13050		AtNiaP	nicotinate transporter, Major ...		Potri.018G151700 [exp]	0	1
AT5G05570			transducin family protein / WD...		Potri.010G187700 [exp]	12.96	0.6819
AT5G38460			ALG6, ALG8 glycosyltransferase...		Potri.017G114100 [exp]	23.62	0.7065
AT1G17110		UBP15	ubiquitin-specific protease 15...		Potri.011G095200 [exp]	25.92	0.7064	Pt-UBP15.2
					Potri.013G062200 [exp]	30.29	0.6653
AT1G19220	ARF	IAA22, ARF11, A...	indole-3-acetic acid inducible...		Potri.018G063000 [exp]	37.62	0.7025	NPH4.1
AT4G11670			Protein of unknown function (D...		Potri.001G108400 [exp]	39.49	0.6726
AT3G12890		ASML2	activator of spomin::LUC2 (.1)		Potri.005G097700 [exp]	41.68	0.6529
AT2G26560		PLP2, PLAIIA, P...	PATATIN-LIKE PROTEIN 2, phosph...		Potri.007G040300 [exp]	42.42	0.5993
AT1G33420			RING/FYVE/PHD zinc finger supe...		Potri.018G137000 [exp]	43.87	0.6492
AT1G17160			pfkB-like carbohydrate kinase ...		Potri.011G114100 [exp]	44.49	0.6177

Compare expression of checked genes

Potri.018G151700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.