Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08370 602 / 0 ATAGAL2 alpha-galactosidase 2 (.1.2) AT5G08380 546 / 0 ATAGAL1 alpha-galactosidase 1 (.1) AT3G56310 506 / 1e-178 Melibiase family protein (.1.2) AT3G26380 89 / 9e-19 Melibiase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G118200 [exp] 604 / 0 AT5G08370 598 / 0.0 alpha-galactosidase 2 (.1.2) Potri.010G255200 [exp] 546 / 0 AT5G08380 667 / 0.0 alpha-galactosidase 1 (.1) Potri.004G038100 [exp] 523 / 0 AT5G08370 522 / 0.0 alpha-galactosidase 2 (.1.2) Potri.019G056700 [exp] 492 / 3e-173 AT3G56310 681 / 0.0 Melibiase family protein (.1.2) Potri.008G185300 [exp] 92 / 1e-19 AT3G26380 830 / 0.0 Melibiase family protein (.1) Potri.010G048400 [exp] 87 / 4e-18 AT3G26380 772 / 0.0 Melibiase family protein (.1) Potri.010G048300 [exp] 84 / 5e-17 AT3G26380 815 / 0.0 Melibiase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024401 [exp] 632 / 0 AT5G08370 587 / 0.0 alpha-galactosidase 2 (.1.2) Lus10038325 [exp] 602 / 0 AT5G08370 558 / 0.0 alpha-galactosidase 2 (.1.2) Lus10018258 [exp] 593 / 0 AT5G08370 553 / 0.0 alpha-galactosidase 2 (.1.2) Lus10018260 [exp] 549 / 0 AT5G08370 539 / 0.0 alpha-galactosidase 2 (.1.2) Lus10036176 [exp] 518 / 0 AT5G08370 521 / 0.0 alpha-galactosidase 2 (.1.2) Lus10010160 [exp] 488 / 6e-172 AT5G08380 581 / 0.0 alpha-galactosidase 1 (.1) Lus10029046 [exp] 487 / 2e-171 AT3G56310 650 / 0.0 Melibiase family protein (.1.2) Lus10038305 [exp] 486 / 2e-171 AT5G08370 490 / 1e-173 alpha-galactosidase 2 (.1.2) Lus10034218 [exp] 481 / 3e-168 AT3G56310 646 / 0.0 Melibiase family protein (.1.2) Lus10017365 [exp] 415 / 4e-143 AT5G08380 501 / 9e-178 alpha-galactosidase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [poplar] [flax] Glyco_hydro_tim PF16499 [poplar] [flax] Melibiase_2 Alpha galactosidase A
Representative CDS sequence Show only first row Show all	>Potri.018G152200.8 pacid=42800748 polypeptide=Potri.018G152200.8.p locus=Potri.018G152200 ID=Potri.018G152200.8.v4.1 annot-version=v4.1 ATGGTGGTTTATCATCAATCTAGCAGCCAATCTATGCTGGGCAAGCTCGGATCAGGAGTGGTTGCCTTATCGATATGCTTCTTCTTCTTCTTCTTGCGAT TGGTGTCAAATGCTGATGCTGCTGGTCGTCCAATCAACATGGGAAAGCAATATTCCAATTCAAGTCATGATGATCGTCAGCTTTCTCGGATGAGGGGTCT TTCTGCAAATGGACTCGGTCTTGCACCACCCATGGGATGGAATAGTTGGAACCATTTTCACTGTAACATTGAAGAGAAATTGATTAGGGATACAGCGGAT GCAATGGTTTCATCTGGCCTTGCTGCTCTAGGATATGAACACGTAAATTTAGACGATTGCTGGGCTGAACTTAACAGGGACTCTGAGGGAAACTTGGTTC CAAAAGCTTCGACGTTTCCCTCGGGAATAAAAGCGTTGGCAGATTATATACATGGAAAAGGGTTGAAGCTTGGAATTTACTCCGATGCTGGGAGTCAGAC CTGCAGTGGAACAATGCCTGGATCATTAGGCCACGAGGAACAAGATGCAAAAACGTTTGCTTCCTGGGGAGTGGACTACTTGAAGTATGATAACTGTAAC AATGATGGTACAAGCCCAAAGGAGAGATATCCAGTAATGAGTAAGGCCTTGTTAAATTCTGGAAGGCCCATCTTCTTTTCACTGTGTGAATGGGGGCAGG AAGACCCAGCAACTTGGGCATCGAATGTTGGAAATAGTTGGAGAACAACAGGAGACATTTCTGATAACTGGGATAGCATGACATCCCGTGCAGATCAAAA CGATCAATGGGCGTCTTATGCTGCACCTGGAGGTTGGAACGATCCTGACATGCTTGAAGTTGGAAATGGAGGCATGACAACAGAGGAATATCGCTCACAT TTCAGCATATGGGCGTTAGCCAAGGCTCCTCTTCTCATTGGATGTGATGTTCGAACAATGAGTGATGAAACAATTGAGATATTAAGCAACAGGGAAGTTA TTGCAGTTAATCAAGATAAGCTTGGAGTGCAGGGGAAAAAGGTTAAGAATAATGGAGATTTAGAGGTGTGGGCTGGCCCTCTTAGCAATAATAAGATAGC GGTGGTGCTATGGAATAGAGGTTCCTCAAGAGCTACAGTTACTGCTTACTGGTCTGACATAGGCCTTGATCCAACGACTACTGTCAATGCTAGAGATTTA TGGGCGCACTCCAATCAGCCATCAGTTAAAGGACAGATATCAGCTGATTTGGATTCCCACGCTTGTAAAATGTATGTCCTGACTCCCCAGTAG
AA sequence Show only first row Show all	>Potri.018G152200.8 pacid=42800748 polypeptide=Potri.018G152200.8.p locus=Potri.018G152200 ID=Potri.018G152200.8.v4.1 annot-version=v4.1 MVVYHQSSSQSMLGKLGSGVVALSICFFFFFLRLVSNADAAGRPINMGKQYSNSSHDDRQLSRMRGLSANGLGLAPPMGWNSWNHFHCNIEEKLIRDTAD AMVSSGLAALGYEHVNLDDCWAELNRDSEGNLVPKASTFPSGIKALADYIHGKGLKLGIYSDAGSQTCSGTMPGSLGHEEQDAKTFASWGVDYLKYDNCN NDGTSPKERYPVMSKALLNSGRPIFFSLCEWGQEDPATWASNVGNSWRTTGDISDNWDSMTSRADQNDQWASYAAPGGWNDPDMLEVGNGGMTTEEYRSH FSIWALAKAPLLIGCDVRTMSDETIEILSNREVIAVNQDKLGVQGKKVKNNGDLEVWAGPLSNNKIAVVLWNRGSSRATVTAYWSDIGLDPTTTVNARDL WAHSNQPSVKGQISADLDSHACKMYVLTPQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G08370		ATAGAL2	alpha-galactosidase 2 (.1.2)		Potri.018G152200 [exp]	0	1
AT1G74190		AtRLP15	receptor like protein 15 (.1)		Potri.018G118062 [exp]	2.82	0.9227
AT1G74190		AtRLP15	receptor like protein 15 (.1)		Potri.018G120800 [exp]	3.00	0.9054
AT4G05200		CRK25	cysteine-rich RLK (RECEPTOR-li...		Potri.004G024566 [exp]	3.00	0.9300
AT1G76360			Protein kinase superfamily pro...		Potri.005G251900 [exp]	7.41	0.8948
AT5G38280		PR5K	PR5-like receptor kinase (.1)		Potri.017G009500 [exp]	7.48	0.8895
AT3G47570			Leucine-rich repeat protein ki...		Potri.018G020000 [exp]	8.71	0.7858
AT2G27660			Cysteine/Histidine-rich C1 dom...		Potri.012G038400 [exp]	10.09	0.8922
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Potri.004G024500 [exp]	12.40	0.8920
AT1G12880		ATNUDT12	nudix hydrolase homolog 12 (.1...		Potri.003G161100 [exp]	13.07	0.8429
AT1G34210		ATSERK2, SERK2	somatic embryogenesis receptor...		Potri.007G082300 [exp]	14.07	0.8824

Compare expression of checked genes

Potri.018G152200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.