Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33990 489 / 1e-162 EMB2758 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G30700 463 / 8e-153 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G16860 464 / 3e-152 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G12770 455 / 6e-151 MEF22 mitochondrial editing factor 22 (.1) AT4G18750 454 / 3e-148 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G22690 441 / 7e-144 unknown protein AT2G29760 438 / 9e-144 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G27610 440 / 4e-143 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G11290 437 / 8e-143 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G21065 428 / 1e-141 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G044700 [exp] 491 / 3e-163 AT3G22690 582 / 0.0 unknown protein Potri.001G466066 [exp] 482 / 1e-159 AT4G33990 1067 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G006800 [exp] 478 / 2e-158 AT3G16610 687 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.012G041200 [exp] 476 / 3e-157 AT5G16860 1083 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G018700 [exp] 474 / 4e-156 AT3G49170 1040 / 0.0 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G181800 [exp] 468 / 2e-154 AT4G30700 1025 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G047800 [exp] 471 / 7e-154 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G071800 [exp] 462 / 2e-153 AT1G08070 606 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G152000 [exp] 461 / 9e-153 AT3G12770 931 / 0.0 mitochondrial editing factor 22 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040648 [exp] 672 / 0 AT4G18750 376 / 1e-119 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10035788 [exp] 505 / 5e-169 AT3G16610 636 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10019735 [exp] 474 / 1e-156 AT4G33990 1015 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10035815 [exp] 469 / 7e-155 AT4G30700 1026 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10017446 [exp] 458 / 3e-150 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10015225 [exp] 456 / 4e-149 AT4G18750 990 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10024876 [exp] 455 / 6e-149 AT3G12770 886 / 0.0 mitochondrial editing factor 22 (.1) Lus10000706 [exp] 446 / 5e-146 AT3G12770 878 / 0.0 mitochondrial editing factor 22 (.1) Lus10013991 [exp] 448 / 5e-145 AT3G57430 632 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10004892 [exp] 445 / 1e-144 AT2G27610 998 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13812 [poplar] [flax] PPR_3 Pentatricopeptide repeat domain CL0109 [poplar] [flax] CDA PF14432 [poplar] [flax] DYW_deaminase DYW family of nucleic acid deaminases
Representative CDS sequence Show only first row Show all	>Potri.018G152300.2 pacid=42800856 polypeptide=Potri.018G152300.2.p locus=Potri.018G152300 ID=Potri.018G152300.2.v4.1 annot-version=v4.1 ATGAAAAGAACAGTTTACCTATGGAACCTGATGATCCGGGATTCCACCAATTCTGCCCTTTTCACCAGAACTCTAGACCTCTATTCTTGTATGCTGCGAA CTGGACTTCATGGCAATGACTTCACTTTCCCCTTGGTCCTCAAAGCCTGCTCCAACACTAACTCCTTACGTGACGCTACTAAGGTCCATTCCCATACCTT CCTTCTTGGATTTCAAGCCCATGTCTTTGTACAGACTGCTCTTCTTGACATGTACTCAAAATGCCATCACCTGCCCTCATCAAGGAAGGTGTTCGATGAA ATGCCTGTGAGAACTGTCGTCTCTTGGAACTCCGTCATCTCTGCTTATTGTCGTTCTTTTTTGTTCCATGAAGCCACTTTGCTACTTCGAGAAATGCGGC TTCTTGGTTTGGATCTAAGCTCCACCACATTCCTGAGCTTTCTGTCTACCACCCCTATTCATCTTCGACAAGGCTTATCTATACACTGTTGCGTATTTAA ACTTGGACTTTTAAATACCTATGATCACATACCTTTAGCCAATGCTGTGATGAGCATGTATATCAGGTATGGTCAAGTCCATGAAGCGCGTGCTATTCTT GATTCGATGCATGAAATATCAGTCGTTTCTTGGTCAACAATTATTGGTGGCTACGTAGATACAGGGAATGTCGATAAAGCCTTCAGCATGTTCAATAGAA TGAGAACAATTAGCACCATCAACTCGGACTTTGTAGTGTTTATAAATCTCATTAAAGGTTGTGCAAAACAAGGGAGTTTGATGGCAGCTTCATCGCTGCA TTCTCTCATATTCAAATGTGGATGTGAGAATAAAGATCCTCTGGACAACTTGCTACTCGGCATGTACGCAAAATGTGGAGACCTCATCTCAGCTAGAAAA GTGTTTGATATGGCACTTGTAAAAACTGTTTTCTTGTGGACCTCTATCATTGGTGGGTACACCCACATGGGTTATCCTGCTGAAGCTTTACTTCTTTTTA AGAAGCTGTTGAAGACAGCTATTAAACCGAATGGAGCAACTCTGGCTACTATCCTGTCAGCTTGTGCTGACTTGGGGTCGTTGGACATGGGCAAAGAGAT TGAAGAGTACATTTTGTCAAATGGGTTTCAGTCAGATAGGCAAGTACAAACCTCTTTGATACACATGTTCTCCAAGTGCGGAAGTATAGGCAAGGCTATA TCAGTGTTTGAGAGGATATCAGATAAGGATTTAGCTGCCTGGAGTTCCATGATAAACGGTAATGCCATTCATGGGATGGCAGAAGAGGCTCTCGGTCTCT TTCACAAGATGCTAGAAATAAAAGAAATAAAGCCGGATGCTGTTGTTTTTACAAGCATATTGTTGGCTTGCAGCCATGTTGGATTGGTTGAAGATGGACT CAAATTTTTTAAAAGCATGCAGAAGGATTTTGGAATAGTACCCAGTGTAGAACATTATATGTGCTTGGTGGATCTTCTCGGCAGAGCTGGTCAGTTTGAA TTGGCTTTGAAAACCATTAGAGTGATGCCTGTCAAACTACAAGCTCAAGTTTGGGCTCCATTTCTTAGTGCTTGCACGAAACATTGCAACCTTGAGCTGG GGGAGCTAGCAGCTAGAAAGCTGTTATATATGAATCCTGGAAGCCATGCTAATTATGTATTAATGGCTAATTTATACACGTCCATGGGAAAGTGGAAGGA GGCCGCTGTAACAAGGAGCTTGATGATTGACAGAGGGTTGGTTAAAGCACCAGGTTGGAGCCAGGTAGAGATCAATGGTTCTGTCCACGTTTTCATTGCT GGAGATCGATCACACACTCAGTCTATTGATATCTACAAAAAGCTAGAGGAAATAAATTTAAAACTTGCAGAAGCTGGATATGTTCCGGAAACAGATACTG TGATTCATGACTTGGAAAGGGAAGAGAAGGAGGAAGCATTGAAAGTTCATAGTGAGAGATTAGCTATTGCATTTGGTCTCATCAGTACTGAAGCAGGCTC AACACTAAGGATTATGAAGAATCATCGAACTTGTGTTGATTGCCATTCTGCTTTAAAATTCATCTCAAAGATTACAGGTAGGCATCTTATTGTGAGAGAT GGTTCCCGCTTCCACCATTTTGAATCTGGTAAATGCACATGCAAGGATTTCTGGTGA
AA sequence Show only first row Show all	>Potri.018G152300.2 pacid=42800856 polypeptide=Potri.018G152300.2.p locus=Potri.018G152300 ID=Potri.018G152300.2.v4.1 annot-version=v4.1 MKRTVYLWNLMIRDSTNSALFTRTLDLYSCMLRTGLHGNDFTFPLVLKACSNTNSLRDATKVHSHTFLLGFQAHVFVQTALLDMYSKCHHLPSSRKVFDE MPVRTVVSWNSVISAYCRSFLFHEATLLLREMRLLGLDLSSTTFLSFLSTTPIHLRQGLSIHCCVFKLGLLNTYDHIPLANAVMSMYIRYGQVHEARAIL DSMHEISVVSWSTIIGGYVDTGNVDKAFSMFNRMRTISTINSDFVVFINLIKGCAKQGSLMAASSLHSLIFKCGCENKDPLDNLLLGMYAKCGDLISARK VFDMALVKTVFLWTSIIGGYTHMGYPAEALLLFKKLLKTAIKPNGATLATILSACADLGSLDMGKEIEEYILSNGFQSDRQVQTSLIHMFSKCGSIGKAI SVFERISDKDLAAWSSMINGNAIHGMAEEALGLFHKMLEIKEIKPDAVVFTSILLACSHVGLVEDGLKFFKSMQKDFGIVPSVEHYMCLVDLLGRAGQFE LALKTIRVMPVKLQAQVWAPFLSACTKHCNLELGELAARKLLYMNPGSHANYVLMANLYTSMGKWKEAAVTRSLMIDRGLVKAPGWSQVEINGSVHVFIA GDRSHTQSIDIYKKLEEINLKLAEAGYVPETDTVIHDLEREEKEEALKVHSERLAIAFGLISTEAGSTLRIMKNHRTCVDCHSALKFISKITGRHLIVRD GSRFHHFESGKCTCKDFW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G33990		EMB2758	embryo defective 2758, Tetratr...		Potri.018G152300 [exp]	0	1
AT3G15130			Tetratricopeptide repeat (TPR)...		Potri.006G244500 [exp]	8.36	0.7624
AT1G69350			Tetratricopeptide repeat (TPR)...		Potri.008G093000 [exp]	8.83	0.8561
AT3G11460			Pentatricopeptide repeat (PPR)...		Potri.006G211400 [exp]	8.88	0.7572
AT3G25970			Pentatricopeptide repeat (PPR)...		Potri.007G146800 [exp]	10.29	0.8555
AT4G38010			Pentatricopeptide repeat (PPR-...		Potri.012G135600 [exp]	12.12	0.8138
AT3G56550			Pentatricopeptide repeat (PPR)...		Potri.016G029500 [exp]	14.49	0.8454
AT5G66520			Tetratricopeptide repeat (TPR)...		Potri.014G132100 [exp]	15.36	0.8480
AT5G08310			Tetratricopeptide repeat (TPR)...		Potri.005G090600 [exp]	15.77	0.8484
AT3G08820			Pentatricopeptide repeat (PPR)...		Potri.006G105700 [exp]	17.46	0.8465
AT3G48250		BIR6	Buthionine sulfoximine-insensi...		Potri.015G084800 [exp]	19.07	0.8287

Compare expression of checked genes

Potri.018G152300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.