Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17820 685 / 0 Putative integral membrane protein conserved region (DUF2404) (.1) AT1G73200 639 / 0 Putative integral membrane protein conserved region (DUF2404) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G155000 [exp] 1208 / 0 AT1G17820 692 / 0.0 Putative integral membrane protein conserved region (DUF2404) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040647 [exp] 794 / 0 AT1G17820 709 / 0.0 Putative integral membrane protein conserved region (DUF2404) (.1) Lus10038326 [exp] 788 / 0 AT1G17820 705 / 0.0 Putative integral membrane protein conserved region (DUF2404) (.1) Lus10036188 [exp] 768 / 0 AT1G17820 687 / 0.0 Putative integral membrane protein conserved region (DUF2404) (.1) Lus10018266 [exp] 734 / 0 AT1G17820 696 / 0.0 Putative integral membrane protein conserved region (DUF2404) (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.018G152400.1 pacid=42801721 polypeptide=Potri.018G152400.1.p locus=Potri.018G152400 ID=Potri.018G152400.1.v4.1 annot-version=v4.1 ATGTGTTCCGTGGCAGTGATATTCGGTGGTGGCTTTGTTTCTGGCCTGCTCACTCTTGTTGCTTTACAAGCTCTGGGTGTTTACTTCTTTATTAAAAGAT TGAATCGAAAGACTCATCTTCAACCACAACAACAAGCATCACATTCTTCTTCTCCTCATCAAGACCTCGATCCCCAACAGTCCCTTTATTATGCCTTTAA CAAGAAGGGAATTGTCTGGGTTCTTGAATCAGATAAGGTTCCCGGGAATTGGCCTGTGGAAAAAGTACCAAAAGATCAAAAGAGGAAAAGGGAGATCCTT GAGGTTACTCCCATTCGAAAACATGCAAACATCAAGGACAGGTCACTTATTTTGACAGATTCAGGTGGTTCACATAGAGCTATCCCTTTGACAGGTTGTG TGATAGAAGCCGTTTCTGCTACAAGCCTTCCCTCAAGAAAATGGGCCGAAAGATTTCCGATAAAAGTGGAAAGCAAAACTTCACCAATATATAATGCAAG TAAGACAGTGTTTATTTTTCTTGAGACGTCCTGGGAGAAGGAGTCATGGTGCAAAGCCCTGCGTCTTGCTTCAAGTGATGACCAAGAAAAACTCAACTGG TTCACCAATTTGAATGAAGATTTCCACCGTTATTTGACATCCTTAAATACAGGATACCCTTCATTTATGAAACCTTCAGTTGGGTTCTATGCTGAGCCAA TAGATAGGGCTAGTAGTAGGCTTGATGGTTCTGAATCGAAGGTTCTCCTGTTTTGGAAAAAGCTTGCCAGAAAGGCATCAAAGACTAGTGTCGAAAATAA GGTGACTTCCTTGTTAGGCCGTGAAGAGAGAAAGATTAATGATAAATATCATCCATCCCAGGACCCAGCTTTTGCTGGTAGTGTGGGAAAGAATGCTCCA ACATTAAAGGATCCTATCATCTCTGAAGAAGAAAATGTAGCATTACCTTCACCGTCAACCTTTTCTCGTGCATCAAGCCAAAGCCAGATCTCCACCATTT CTAATACAGACACTGATGAAAAGTTAAATATTGATGAGGGATCACTCTGCTGGAATTTGATTATTTCTCGGCTCTTTTTTGATGCCAAAAGCAATGCCAA GATGAAGAGTTTAGCGCAAGCATGGATTCAGGGAACATTGTCCAATATGAGGACCCCCAGTTACATTGGTGAAGTCATATGCACTGATCTAGAACTTGGA AATCTTCCACCATATATTGATGGTATTAGGGTTCTTCCTACAGACATGAACGAAGTATGGGCATGGGAATTTGACATCGAATATTGTGGTGGGGTGGTGC CAGGTATTGAAACAAGACTGGAAGTTCGTGACCTAGTTATGGAGAAAGGTGTGGTGAATACAGACTCAGGATCCAGCTCTATTAGGGATGTTTCTTCAGA CCTTCTGGAAGGTTTTGAACATCTTGGAGAGCAGTTGAATCTTTCTGAAGGGACTGTCGATTCACATGAATGGAAGGATGAGGGTAATACTAAGCCTGAT AAATTAAAGGACTCTAAAAGTGGTGCATCAACATCAACCGATTTATCTAGGTGGAAGTCCATTCTTAATTCTGTCGCGAAACAGGTTCTGCAGGTGCCAC TTTCATTGTCAATAAGGGTCGCATCTCTTCGTGGAACGGTGAGATTACATATTAAGCCACCTCCTTCTGATCAGTTATGGTTTGGCTTCACATCCATGCC TGATGTGGAGTTTGAGTTGGAGTCTTCTGTTGGGGAACACAAGATCACCAGTGGACAAGTAGCTTCGTTCCTGATTAATAAATTTAAGGCTGCGATCCGC GAGACGATGGTTCTCCCAAACTGTGAAAGTGTTTGCATCCCCGGGATGTTAGCAGAGAAGAATGACTGGGTCCCTCGAAATGCTGCTCCTTTTATATGGA TTAATCAAGAAGCCGCTAGTGATAATGACATTGAACTTGAGCTCTTGAACTCCCAACTTGATGCAAAAACCAATATTGAAGTTAGCAGAGGAACCTCACT TGATCATCCAGAAAGCAAGCATCAAAAAGCTGAAAATGTTCAACAGTCATTTTCTGATTATTCAGATGCATTGCCACGCGCATTAAGCTCTAACAAGCCA TCAATGAAAAATGACAAATCATCGCAAGATCTAACAAGTCCTTTGTTGACAATCAGTGAAGCACAAGAAACTGGCCGAGGAAGCAGTGGATATATCTCGG AGAGTCAATCACTACTGTCTAGGTCTCTTCTAACTCTGGAGAAACAGACTCATGCTGTTGAAGAAATACCTAAGAAAATGGGAAGAAGAGCGAAGATGCT TGATCTAGGGAAGAAGATGGGGGAGAAATTCGAAGAAAAGAGGCGGCATATTGAAGAAAAGGGAAGGAACATCGTTGACAAGATGCGAGGACCATGA
AA sequence Show only first row Show all	>Potri.018G152400.1 pacid=42801721 polypeptide=Potri.018G152400.1.p locus=Potri.018G152400 ID=Potri.018G152400.1.v4.1 annot-version=v4.1 MCSVAVIFGGGFVSGLLTLVALQALGVYFFIKRLNRKTHLQPQQQASHSSSPHQDLDPQQSLYYAFNKKGIVWVLESDKVPGNWPVEKVPKDQKRKREIL EVTPIRKHANIKDRSLILTDSGGSHRAIPLTGCVIEAVSATSLPSRKWAERFPIKVESKTSPIYNASKTVFIFLETSWEKESWCKALRLASSDDQEKLNW FTNLNEDFHRYLTSLNTGYPSFMKPSVGFYAEPIDRASSRLDGSESKVLLFWKKLARKASKTSVENKVTSLLGREERKINDKYHPSQDPAFAGSVGKNAP TLKDPIISEEENVALPSPSTFSRASSQSQISTISNTDTDEKLNIDEGSLCWNLIISRLFFDAKSNAKMKSLAQAWIQGTLSNMRTPSYIGEVICTDLELG NLPPYIDGIRVLPTDMNEVWAWEFDIEYCGGVVPGIETRLEVRDLVMEKGVVNTDSGSSSIRDVSSDLLEGFEHLGEQLNLSEGTVDSHEWKDEGNTKPD KLKDSKSGASTSTDLSRWKSILNSVAKQVLQVPLSLSIRVASLRGTVRLHIKPPPSDQLWFGFTSMPDVEFELESSVGEHKITSGQVASFLINKFKAAIR ETMVLPNCESVCIPGMLAEKNDWVPRNAAPFIWINQEAASDNDIELELLNSQLDAKTNIEVSRGTSLDHPESKHQKAENVQQSFSDYSDALPRALSSNKP SMKNDKSSQDLTSPLLTISEAQETGRGSSGYISESQSLLSRSLLTLEKQTHAVEEIPKKMGRRAKMLDLGKKMGEKFEEKRRHIEEKGRNIVDKMRGP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G17820			Putative integral membrane pro...		Potri.018G152400 [exp]	0	1
AT4G35520		MLH3, ATMLH3	MUTL protein homolog 3 (.1)		Potri.005G101900 [exp]	2.44	0.8959
AT3G29320		PHS1	alpha-glucan phosphorylase 1, ...		Potri.008G093901 [exp]	2.64	0.9152
AT5G40840		SYN2, ATRAD21.1	Sister chromatid cohesion 1 \(...		Potri.017G067400 [exp]	2.82	0.9007	SYN2.1
AT5G37020	ARF	ARF8, ATARF8	auxin response factor 8 (.1.2)		Potri.017G141000 [exp]	4.24	0.8843
AT1G60800		NIK3	NSP-interacting kinase 3 (.1)		Potri.008G188800 [exp]	5.29	0.8787
AT2G31320		ATPARP2	poly(ADP-ribose) polymerase 2 ...		Potri.002G041300 [exp]	8.94	0.8768
AT3G49725			GTP-binding protein, HflX (.1)		Potri.007G007700 [exp]	9.16	0.8652
AT4G02550			unknown protein		Potri.010G215600 [exp]	10.95	0.9001
AT3G23590		MED33A, RFR1	REF4-related 1 (.1)		Potri.016G142500 [exp]	14.35	0.8341
AT1G05270			TraB family protein (.1)		Potri.007G121800 [exp]	16.97	0.8440

Compare expression of checked genes

Potri.018G152400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.