Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17830 322 / 3e-109 Protein of unknown function (DUF789) (.1) AT1G73210 306 / 1e-103 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2) AT4G03420 300 / 2e-101 Protein of unknown function (DUF789) (.1) AT1G03610 291 / 6e-98 Protein of unknown function (DUF789) (.1) AT4G28150 273 / 6e-91 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2) AT2G01260 193 / 1e-58 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2), Protein of unknown function (DUF789) (.3) AT1G15030 189 / 4e-57 Protein of unknown function (DUF789) (.1) AT5G49220 182 / 6e-54 Protein of unknown function (DUF789) (.1) AT4G16100 169 / 3e-49 Protein of unknown function (DUF789) (.1) AT5G23380 152 / 7e-44 Protein of unknown function (DUF789) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G155200 [exp] 546 / 0 AT1G17830 328 / 9e-112 Protein of unknown function (DUF789) (.1) Potri.013G144000 [exp] 296 / 1e-99 AT4G03420 414 / 2e-146 Protein of unknown function (DUF789) (.1) Potri.019G103000 [exp] 293 / 3e-98 AT4G03420 427 / 2e-151 Protein of unknown function (DUF789) (.1) Potri.010G000700 [exp] 192 / 4e-58 AT5G49220 342 / 3e-115 Protein of unknown function (DUF789) (.1) Potri.008G213300 [exp] 188 / 3e-56 AT5G49220 338 / 2e-113 Protein of unknown function (DUF789) (.1) Potri.008G124000 [exp] 187 / 3e-56 AT2G01260 384 / 1e-132 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2), Protein of unknown function (DUF789) (.3) Potri.010G120700 [exp] 185 / 3e-55 AT2G01260 367 / 1e-125 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2), Protein of unknown function (DUF789) (.3) Potri.017G152601 [exp] 92 / 3e-20 AT1G03610 95 / 9e-21 Protein of unknown function (DUF789) (.1) Potri.004G068700 [exp] 91 / 5e-20 AT1G73210 100 / 2e-22 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038327 [exp] 353 / 2e-121 AT1G73210 319 / 1e-108 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2) Lus10036189 [exp] 314 / 2e-105 AT1G73210 298 / 2e-99 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2) Lus10018572 [exp] 280 / 6e-93 AT4G03420 405 / 1e-142 Protein of unknown function (DUF789) (.1) Lus10033707 [exp] 238 / 2e-76 AT4G03420 359 / 2e-124 Protein of unknown function (DUF789) (.1) Lus10031632 [exp] 230 / 8e-74 AT4G03420 345 / 2e-119 Protein of unknown function (DUF789) (.1) Lus10039803 [exp] 201 / 5e-63 AT1G03610 303 / 2e-103 Protein of unknown function (DUF789) (.1) Lus10037716 [exp] 187 / 8e-56 AT4G16100 311 / 4e-103 Protein of unknown function (DUF789) (.1) Lus10016841 [exp] 187 / 1e-55 AT4G16100 310 / 2e-102 Protein of unknown function (DUF789) (.1) Lus10037717 [exp] 187 / 7e-54 AT4G16100 321 / 2e-103 Protein of unknown function (DUF789) (.1) Lus10040646 [exp] 154 / 1e-45 AT1G03610 133 / 6e-38 Protein of unknown function (DUF789) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05623 [poplar] [flax] DUF789 Protein of unknown function (DUF789)
Representative CDS sequence Show only first row Show all	>Potri.018G152500.3 pacid=42801735 polypeptide=Potri.018G152500.3.p locus=Potri.018G152500 ID=Potri.018G152500.3.v4.1 annot-version=v4.1 ATGATGGACCTGAGTGGTAAAAAAAGCGCAACGCGGTCTGTGTTGGTGCCTTCGACAACTCATCAGCGGCAGCACTCCAATCTTGAACGCTTTCTTCAAT GTGTAACTCCAACTGCTCCTCCTAAATTCCTTCCCGAGAGCTGCATTCGTGATCTAAATAGCTTATGGCAACCACCTGGTACTAAGGATATGGTTGAATA TTTCACTTTGGGAGATTTATGGGATTGCTACGATGAATGGAGCGCATATGGTGCTGGCACCCAAGTAGTGTTGAGCAGCGGTGACACCATTATGCAATAT TATGTCCCTTACCTGTCAGCCATTCAGATTTACAGCAATAAGTCGGTGGTGGCTTCCAGGGACTCAAGAGAGTATAATGATGTTGTCGAATTTGAAAGTG ATTCTTGGAGCGATGACAGCATGAGTGATAAACTGTCGAGGTCGCTAAGCAACAATTCCAGCAAGACATGGGATACCATTTCTGAAGATTCAAGCTTTGA CCATGAGGGTTCTTTGTCAATGAGGGATAAGCTTGGCTCTCTGTCCTTTCAGTACTTCGAGATATCTTCTCCTTACTGGAGGGTTCCACTTTTAGAAAAG ATAACTGAATTAGCCAGGAATAAGCCGGGATTAATGACACTCAAGAATGTGGATCTTTCTCCGGCGAGTTGGATGGCTGTTGCTTGGTACCCCATATATC ACATTCCATCTCAGGGAAATGAGAAGGACCTGTCATCATGCTTCTTGACTTATCATACACTTTCATCATCTTTCCAAGATTGCGTCAATGAGGATGGAGA GGGAAATGTCTGTATATCCCTTCCTCCATTCGGTCTGGCCACATACAAATTGCAAGGGAATCTTTGGATAAATCCAGAGACATCTGATGATGAAAGAATG ATTTATCTTGAAAGTGCTGCTGATTCCTGGTTGAAGCAGCTAAATGTCCACCATCATGATTATAGCTTTTTTACCAGCTGCCAGTACACCATGTAA
AA sequence Show only first row Show all	>Potri.018G152500.3 pacid=42801735 polypeptide=Potri.018G152500.3.p locus=Potri.018G152500 ID=Potri.018G152500.3.v4.1 annot-version=v4.1 MMDLSGKKSATRSVLVPSTTHQRQHSNLERFLQCVTPTAPPKFLPESCIRDLNSLWQPPGTKDMVEYFTLGDLWDCYDEWSAYGAGTQVVLSSGDTIMQY YVPYLSAIQIYSNKSVVASRDSREYNDVVEFESDSWSDDSMSDKLSRSLSNNSSKTWDTISEDSSFDHEGSLSMRDKLGSLSFQYFEISSPYWRVPLLEK ITELARNKPGLMTLKNVDLSPASWMAVAWYPIYHIPSQGNEKDLSSCFLTYHTLSSSFQDCVNEDGEGNVCISLPPFGLATYKLQGNLWINPETSDDERM IYLESAADSWLKQLNVHHHDYSFFTSCQYTM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G17830			Protein of unknown function (D...		Potri.018G152500 [exp]	0	1
AT1G65780			P-loop containing nucleoside t...		Potri.017G140300 [exp]	17.05	0.7385
AT1G60500		DRP4C	Dynamin related protein 4C (.1...		Potri.003G024600 [exp]	30.19	0.7284
AT4G14030		SBP1	selenium-binding protein 1 (.1...		Potri.017G060000 [exp]	48.76	0.6848	SBP.2
AT3G04910		ATWNK1, ZIK4, W...	with no lysine (K) kinase 1 (....		Potri.010G087900 [exp]	55.09	0.6543
AT5G57655			xylose isomerase family protei...		Potri.018G096049 [exp]	55.92	0.6771
AT5G48960			HAD-superfamily hydrolase, sub...		Potri.010G002900 [exp]	59.86	0.6984
					Potri.016G129400 [exp]	59.96	0.6457
AT1G60500		DRP4C	Dynamin related protein 4C (.1...		Potri.003G024200 [exp]	65.03	0.6959
AT4G20930			6-phosphogluconate dehydrogena...		Potri.001G465600 [exp]	74.75	0.6919
AT1G19250		FMO1	flavin-dependent monooxygenase...		Potri.018G115800 [exp]	77.29	0.6866

Compare expression of checked genes

Potri.018G152500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.