Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17840 1153 / 0 AtABCG11, WBC11, DSO, ABCG11 ,COF1, ATWBC11 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) AT3G21090 705 / 0 ABCG15 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) AT1G51500 702 / 0 AtABCG12, WBC12, ABCG12, D3, CER5, ATWBC12 ECERIFERUM 5, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX 12, ATP-binding cassette G12, ABC-2 type transporter family protein (.1) AT1G51460 638 / 0 ABCG13 ATP-binding cassette G13, ABC-2 type transporter family protein (.1) AT2G28070 402 / 2e-130 ABCG3 ATP-binding cassette G3, ABC-2 type transporter family protein (.1) AT3G55090 257 / 4e-75 ABCG16 ATP-binding cassette G16, ABC-2 type transporter family protein (.1) AT3G55110 250 / 7e-73 ABCG18 ATP-binding cassette G18, ABC-2 type transporter family protein (.1) AT3G55100 245 / 2e-71 ABCG17 ATP-binding cassette G17, ABC-2 type transporter family protein (.1) AT3G55130 245 / 8e-71 ABCG19, ATWBC19 ATP-binding cassette G19, white-brown complex homolog 19 (.1) AT2G39350 245 / 8e-71 ABCG1 ATP-binding cassette G1, ABC-2 type transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G155300 [exp] 1320 / 0 AT1G17840 1174 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Potri.009G051200 [exp] 733 / 0 AT3G21090 1008 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Potri.001G255800 [exp] 731 / 0 AT3G21090 1038 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Potri.009G051300 [exp] 697 / 0 AT3G21090 943 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Potri.001G255900 [exp] 693 / 0 AT3G21090 929 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Potri.005G073050 [exp] 649 / 0 AT1G17840 659 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Potri.005G073100 [exp] 648 / 0 AT1G17840 661 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Potri.017G051300 [exp] 626 / 0 AT1G17840 611 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Potri.001G312300 [exp] 625 / 0 AT1G17840 624 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040644 [exp] 1179 / 0 AT1G17840 1120 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Lus10018268 [exp] 874 / 0 AT1G17840 849 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Lus10009961 [exp] 639 / 0 AT3G21090 971 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Lus10027354 [exp] 630 / 0 AT3G21090 868 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Lus10009959 [exp] 600 / 0 AT3G21090 860 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Lus10023154 [exp] 600 / 0 AT1G17840 613 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Lus10009960 [exp] 593 / 0 AT3G21090 855 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Lus10000339 [exp] 577 / 0 AT1G51460 837 / 0.0 ATP-binding cassette G13, ABC-2 type transporter family protein (.1) Lus10031063 [exp] 532 / 0 AT3G21090 659 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Lus10035445 [exp] 536 / 3e-179 AT3G21090 667 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00005 [poplar] [flax] ABC_tran ABC transporter CL0181 [poplar] [flax] ABC-2 PF01061 [poplar] [flax] ABC2_membrane ABC-2 type transporter
Representative CDS sequence Show only first row Show all	>Potri.018G152600.1 pacid=42800742 polypeptide=Potri.018G152600.1.p locus=Potri.018G152600 ID=Potri.018G152600.1.v4.1 annot-version=v4.1 ATGGCGAGGAACCCATCAACGAATAAAGTAATAATGGAGATAGAGGCAAGCATACCATCAGGGATTGTAGAGGGAATAGCGGTGGATGGAACAGTGGTAG GAGGTTTGAGTCCTCTGAGCGAGACCCTTTGGAGAGACAGAACGAGCACAGAATTCGTAGGAGATGTGTCGGCAAGGCTTACATGGAAGGATCTGACTGT GATGGTTACCCTCGGTAGTGGAGAAACACAAAATGTTTTGGAGGGACTTACTGGCTATGCCGAGCCTGGAACTCTCACTGCACTTATGGGTCCTTCTGGC TCTGGCAAATCTACTCTCCTTGATGCTCTCTCGAGTCGCCTTGCTGCTAATGCCTTCCTCTCTGGAACGGTCCTCCTCAATGGTCGCAAAACCAAGCTCT CTTTTGGGACTGCTGCGTATGTGACACAAGATGACAACTTGCTCGGTACTTTGACGGTGAGGGAAACAATCTCCTTTTCAGCTCGGCTACGTCTTCCTGA TAAGATGCCGTGGTCCGAGAAGCGTGCGTTGGTTGAGAGTACCATAATAGAGATGGGTCTCCAAGATTGTGCCGATACTGTTATTGGGAATTGGCATTTG CGTGGGATCAGTGGGGGAGAGAAGAGAAGGGTCAGCATTGCTCTTGAAATCCTGATGAGGCCCAGACTGCTCTTTCTTGATGAACCAACTAGTGGACTTG ACAGTGCTTCAGCTTTCTTTGTAACTCAGACGCTTCGCGGCTTATCTAGAGATGGAAGAACTGTCATTGCTTCAATACACCAGCCTAGCAGCGAAGTTTT TGAGCTTTTTGATAGATTGTATTTGCTTTCAGGAGGCAAAACTGTTTACTTCGGTCAGGCTGCAGAAGCATACGAGTTCTTTGCACAAGCTGGCTTTCCC TGCCCTGCTTTGAGAAACCCTTCTGATCATTTCCTTAGGTGCATCAATTCTGACTTCGACAAAGTGAAGGCTACTCTGAAAGGGTCCATGAAACTGCGGT TTGAGGCAAGTGATGATCCTATAGAGAAGATAACCACGGCTGAAGCTATCAGATCTCTGATTGGTTACTATCGTACTTCTCAGTACTGTTATGCAGCAAG AGAAAAGGTTGAGGAGATATCCAAAGTTAAAGGAGATGTGCTAGAATCAGGAGGAAGCCGGGCTAGTTTCTTGATGCAGGCCTTTACTCTGACAAAGCGT TCATTCATTAACATGTCAAGGGATTTCGGGTATTACTGGCTTCGACTGGTGATTTATATTGTGGTCACTGTCTGCATTGGAACTATCTATCTCAACGTGG GGACGGGTTACAATTCTATACTGGCAAGAGGGTCATGTGCCTCGTTTGTCTTTGGTTTTGTCACATTCATGTCAATTGGTGGGTTTCCTTCCTTTGTAGA AGAGATGAAGGTCTTCCAGAGAGAGAGGCTAAATGGGCACTATGGCGTGATCGCATTTGTGATTAGCAACACCATTTCTGCAATGCCGTTCCTGATAATG ATAACTTTCATCTCTGGAACTGTTTGTTATTTCATGGTTCGCCTTCATCCAGGATTTGAACATTATCTTTTCTTCGTGCTGTGCCTTTTTGCGAGTGTCA CCGTAGTTGAAAGCTTGATGATGGCCATAGCCAGCATTGTCCCCAATTTCCTAATGGGCATTATCATTGGGGCAGGAATTCAGGGAATATTCATGCTAGT ATCTGGATACTTTAGGCTCCCAAATGACATACCAAAGCCTGTGTGGAGATACCCAATGTCATACATTAGCTTCCACTTCTGGGCTCTACAGGGACAATAC CAAAATGATTTGAAAGGATTGCTGTTCGACAACCAATCACCTGATCTTCCCAAGATACCTGGTGAGTACATACTGGAAAACATATTCCAGATTGATGTGC ACCGGTCAAAATGGGTAGATCTCAGCGTCATATTCAGTATGATTGTCATCTACCGCGTCATCTTCTTTATCATGATCAAGATCAGTGAGGATGTTACCCC TTGGATCAGAGGTTACATAGCAAGGAGAAGAATGCAGCAGAAGAATGGAACTCAAAATACAACAGTTGCTCCTGATGGTCTCACCCACTCACCTTCTTTG AGGAATTATGTTGCCGATCATCGATCCAAATAA
AA sequence Show only first row Show all	>Potri.018G152600.1 pacid=42800742 polypeptide=Potri.018G152600.1.p locus=Potri.018G152600 ID=Potri.018G152600.1.v4.1 annot-version=v4.1 MARNPSTNKVIMEIEASIPSGIVEGIAVDGTVVGGLSPLSETLWRDRTSTEFVGDVSARLTWKDLTVMVTLGSGETQNVLEGLTGYAEPGTLTALMGPSG SGKSTLLDALSSRLAANAFLSGTVLLNGRKTKLSFGTAAYVTQDDNLLGTLTVRETISFSARLRLPDKMPWSEKRALVESTIIEMGLQDCADTVIGNWHL RGISGGEKRRVSIALEILMRPRLLFLDEPTSGLDSASAFFVTQTLRGLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGQAAEAYEFFAQAGFP CPALRNPSDHFLRCINSDFDKVKATLKGSMKLRFEASDDPIEKITTAEAIRSLIGYYRTSQYCYAAREKVEEISKVKGDVLESGGSRASFLMQAFTLTKR SFINMSRDFGYYWLRLVIYIVVTVCIGTIYLNVGTGYNSILARGSCASFVFGFVTFMSIGGFPSFVEEMKVFQRERLNGHYGVIAFVISNTISAMPFLIM ITFISGTVCYFMVRLHPGFEHYLFFVLCLFASVTVVESLMMAIASIVPNFLMGIIIGAGIQGIFMLVSGYFRLPNDIPKPVWRYPMSYISFHFWALQGQY QNDLKGLLFDNQSPDLPKIPGEYILENIFQIDVHRSKWVDLSVIFSMIVIYRVIFFIMIKISEDVTPWIRGYIARRRMQQKNGTQNTTVAPDGLTHSPSL RNYVADHRSK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G17840		AtABCG11, WBC11...	DESPERADO, CUTICULAR DEFECT AN...		Potri.018G152600 [exp]	0	1
AT1G20080		SYT2, NTMCTYPE1...	synaptotagmin 2, Calcium-depen...		Potri.002G019800 [exp]	1.00	0.9660
AT5G46880	HD	HDG5, HB-7	HOMEODOMAIN GLABROUS 5, homeob...		Potri.003G096000 [exp]	3.74	0.9492
AT1G65620	AS2	AS2	ASYMMETRIC LEAVES 2, Lateral o...		Potri.010G177100 [exp]	4.47	0.9416	AS2.1
AT2G28470		BGAL8	beta-galactosidase 8 (.1.2)		Potri.011G044300 [exp]	6.00	0.9296	GAL1.6
AT3G59420		ACR4	crinkly4 (.1)		Potri.007G128400 [exp]	6.24	0.9290	ACR4.3
AT4G01470		ATTIP1.3, GAMMA...	tonoplast intrinsic protein 1;...		Potri.004G216500 [exp]	6.70	0.9491
AT1G14440	ZF_HD	ATHB31, ZHD4	ZINC FINGER HOMEODOMAIN 4, hom...		Potri.003G000400 [exp]	7.74	0.9284
AT4G14550	AUX_IAA	SLR, IAA14	SOLITARY ROOT, indole-3-acetic...		Potri.008G161200 [exp]	9.38	0.9190	IAA14.1
AT5G16110			unknown protein		Potri.005G108633 [exp]	9.48	0.9066
AT1G01140		PKS6, CIPK9, Sn...	SNF1-RELATED PROTEIN KINASE 3....		Potri.002G177900 [exp]	11.83	0.9126

Compare expression of checked genes

Potri.018G152600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.