Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G36930 78 / 1e-15 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT1G27180 72 / 1e-13 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT1G27170 72 / 2e-13 transmembrane receptors;ATP binding (.1.2) AT5G45230 66 / 2e-11 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G11250 65 / 3e-11 Disease resistance protein (TIR-NBS-LRR class) (.1) AT5G41740 65 / 4e-11 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT5G41750 62 / 3e-10 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT3G25510 61 / 5e-10 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT3G44670 61 / 7e-10 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT1G57650 60 / 1e-09 ATP binding (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T005501 [exp] 656 / 0 AT5G36930 612 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G003942 [exp] 578 / 0 AT5G36930 591 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G003285 [exp] 544 / 0 AT5G36930 640 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G004599 [exp] 240 / 2e-71 AT5G36930 627 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G002628 [exp] 199 / 3e-64 ND / Potri.003G084366 [exp] 192 / 6e-58 AT5G36930 145 / 2e-37 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G007884 [exp] 200 / 3e-57 AT5G36930 654 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.001G066500 [exp] 166 / 9e-46 AT5G36930 462 / 2e-146 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.013G037599 [exp] 166 / 2e-45 AT5G36930 627 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039850 [exp] 90 / 2e-19 AT5G36930 573 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10018616 [exp] 87 / 2e-18 AT5G36930 578 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10003749 [exp] 73 / 7e-14 AT5G17680 517 / 5e-161 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10011104 [exp] 71 / 4e-13 AT5G17680 574 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10029722 [exp] 64 / 5e-11 AT5G17680 608 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10011741 [exp] 64 / 9e-11 AT5G36930 540 / 4e-172 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10042753 [exp] 59 / 1e-09 AT4G12010 121 / 3e-30 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10005171 [exp] 60 / 2e-09 AT1G27170 576 / 0.0 transmembrane receptors;ATP binding (.1.2) Lus10016029 [exp] 57 / 2e-08 AT4G12010 451 / 2e-138 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10012247 [exp] 53 / 1e-07 AT5G45230 92 / 2e-20 Disease resistance protein (TIR-NBS-LRR class) family (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.019G000657.1 pacid=42774695 polypeptide=Potri.019G000657.1.p locus=Potri.019G000657 ID=Potri.019G000657.1.v4.1 annot-version=v4.1 ATGCTACCTGCTTCTTTCACTAGTTTCAGCTCATTGAAAGAACTAAATCTAAGTTATTCTGGTTTGTCTGAAGCTACAAGTTCCATTGATCTTGGGAGTT TGTGCTTTCTTGAAAATTTGAATTTGTCTGGACATGAATTCTTCAATCTGCCTTCTAGCATTAGCCGCCTTTCTAAGCTTCAATTTTTGACGGTTGAGAG ATGCTCGAATCTTCTATCAATCTCAGAGCTTCCATCAAGTGTACTGTTCTTGTCTATCAATGACTGCACATCCATTGAAAGAGTAAGGGCACCACTTCAG CATGAAAGACTACCATTACTGAATGTAAAAGGGTGCCGAAATTTAATAGAGATTCAGGGTATGGAATGTGCGGGCAATAACTGGTCCATTTTGAACTTAA ATGGCTGCAACAATTTATCTGAAAACTATAAGATGAGTCTCATTCAGGGATTATGCAAAGGTAAACATTATGATATTTGCCTTGATGGTGGTGAGATACC AGAATGGTTCAGCCATCGTGGAGAAGGATCTGCATTATCATTTCATTTTTCAGTTCCAGATGGTAACAAACTCCAAGCGCTGCTTCTTTGGGTTGTACTC TCGGCCTCCACCAATGAAGCCACTCGAGAATCATCATTTCTCCAGTTTGATATGTGTGTTGCTACTTTCAAAAATAAGAGCAATGGTATTGAATTGTTTG AGACGATGGCGGCAGTTACGTTTGACAGAACTATCACGAAGCATTCTTGGATACAGCATATACCGTTGATTGGGTTAGAGGAATCGCTGCAAGGTGTAGA GGAATTGGAAGTGAATGTCAAAATAAGCTTATATGATGTTCCAAAATGTTGGGTAGAAAAATGTGGGGTACATTTGATAATGGAAAAGAATAAAGCAGAT TCAGATCAGGAGATTGATATTAATGCTCTAGGCTCTGATGATCAGCTGTTGGAAAGTAGTTTGACAAGAGTTGCAGAAATGGAAAATCACCGGTTGCAGT AA
AA sequence Show only first row Show all	>Potri.019G000657.1 pacid=42774695 polypeptide=Potri.019G000657.1.p locus=Potri.019G000657 ID=Potri.019G000657.1.v4.1 annot-version=v4.1 MLPASFTSFSSLKELNLSYSGLSEATSSIDLGSLCFLENLNLSGHEFFNLPSSISRLSKLQFLTVERCSNLLSISELPSSVLFLSINDCTSIERVRAPLQ HERLPLLNVKGCRNLIEIQGMECAGNNWSILNLNGCNNLSENYKMSLIQGLCKGKHYDICLDGGEIPEWFSHRGEGSALSFHFSVPDGNKLQALLLWVVL SASTNEATRESSFLQFDMCVATFKNKSNGIELFETMAAVTFDRTITKHSWIQHIPLIGLEESLQGVEELEVNVKISLYDVPKCWVEKCGVHLIMEKNKAD SDQEIDINALGSDDQLLESSLTRVAEMENHRLQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G36930			Disease resistance protein (TI...		Potri.019G000657 [exp]	0	1
					Potri.019G002628 [exp]	2.82	0.8721
AT5G28780			PIF1 helicase (.1)		Potri.011G042150 [exp]	5.29	0.8172
AT5G26594		ARR24	response regulator 24 (.1)		Potri.019G024900 [exp]	7.48	0.8172
AT3G19280		FUCTA, FUCT1, A...	fucosyltransferase 11 (.1)		Potri.019G091200 [exp]	8.36	0.8172	FUCT3.1
					Potri.010G007833 [exp]	15.09	0.7466
AT1G77410		BGAL16	beta-galactosidase 16 (.1)		Potri.004G036000 [exp]	16.12	0.7444
AT5G36930			Disease resistance protein (TI...		Potri.019G001314 [exp]	16.58	0.7557
AT4G23160		CRK8	cysteine-rich RLK (RECEPTOR-li...		Potri.011G028901 [exp]	17.32	0.7276
AT5G36930			Disease resistance protein (TI...		Potri.019G003942 [exp]	19.79	0.7414
AT2G35615			Eukaryotic aspartyl protease f...		Potri.003G105300 [exp]	21.44	0.7134

Compare expression of checked genes

Potri.019G000657 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.